Wall clock time and date at job start Mon Mar 30 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47044 * 2 1 4 4 C 1.36944 * 119.99615 * 272.65074 * 3 2 1 5 5 H 1.08000 * 119.99607 * 140.89220 * 4 3 2 6 6 C 1.38803 * 120.00015 * 320.88739 * 4 3 2 7 7 N 1.31620 * 120.00491 * 340.91731 * 6 4 3 8 8 Si 1.86805 * 120.00051 * 160.92019 * 6 4 3 9 9 H 1.48504 * 109.46833 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47256 * 119.99937 * 8 6 4 11 11 H 1.48493 * 109.46905 * 240.00236 * 8 6 4 12 12 C 1.46497 * 120.00241 * 92.65049 * 3 2 1 13 13 C 1.50702 * 109.47314 * 270.00115 * 12 3 2 14 14 C 1.32559 * 120.00192 * 128.85392 * 13 12 3 15 15 C 1.47809 * 119.99995 * 9.38445 * 14 13 12 16 16 C 1.39557 * 120.13894 * 40.93417 * 15 14 13 17 17 C 1.37961 * 119.85517 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.92638 * 179.97438 * 17 16 15 19 19 C 1.38365 * 120.14052 * 0.02562 * 17 16 15 20 20 C 1.50703 * 119.85536 * 179.97438 * 19 17 16 21 21 C 1.38325 * 120.28612 * 0.02562 * 19 17 16 22 22 C 1.37993 * 120.14312 * 359.68410 * 21 19 17 23 23 C 1.50698 * 120.07364 * 180.31954 * 22 21 19 24 24 H 1.09002 * 109.47434 * 300.00035 * 1 2 3 25 25 H 1.09000 * 109.47056 * 60.00246 * 1 2 3 26 26 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47434 * 239.99965 * 2 1 3 28 28 H 1.09000 * 109.47056 * 119.99754 * 2 1 3 29 29 H 0.96994 * 120.00707 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47294 * 150.00283 * 12 3 2 31 31 H 1.08999 * 109.46823 * 29.99951 * 12 3 2 32 32 H 1.08002 * 119.99845 * 309.13882 * 13 12 3 33 33 H 1.08002 * 120.00029 * 189.38308 * 14 13 12 34 34 H 1.07993 * 120.07404 * 0.02562 * 16 15 14 35 35 H 1.09002 * 109.47051 * 90.00133 * 18 17 16 36 36 H 1.08996 * 109.46831 * 209.99773 * 18 17 16 37 37 H 1.08997 * 109.47412 * 330.00107 * 18 17 16 38 38 H 1.09000 * 109.46546 * 89.99511 * 20 19 17 39 39 H 1.08997 * 109.46818 * 209.99771 * 20 19 17 40 40 H 1.08996 * 109.46696 * 330.00162 * 20 19 17 41 41 H 1.08001 * 119.92634 * 180.02562 * 21 19 17 42 42 H 1.09002 * 109.47035 * 270.27319 * 23 22 21 43 43 H 1.08997 * 109.47002 * 30.27525 * 23 22 21 44 44 H 1.09001 * 109.47297 * 150.27420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1948 2.0450 -1.1848 5 1 1.9340 3.0902 -1.2621 6 6 2.7088 1.3745 -2.2860 7 7 3.3679 0.2472 -2.1216 8 14 2.4654 2.0722 -4.0017 9 1 1.6962 3.3397 -3.9160 10 1 3.7889 2.3367 -4.6210 11 1 1.7168 1.0947 -4.8319 12 6 2.3178 2.0523 1.2673 13 6 1.0823 2.7555 1.7676 14 6 0.6653 2.5591 3.0105 15 6 1.5162 1.8211 3.9676 16 6 2.8937 2.0433 3.9964 17 6 3.6825 1.3509 4.8918 18 6 5.1702 1.5892 4.9239 19 6 3.1107 0.4375 5.7596 20 6 3.9784 -0.3158 6.7347 21 6 1.7462 0.2119 5.7354 22 6 0.9453 0.9023 4.8487 23 6 -0.5420 0.6606 4.8285 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7275 -0.2212 -2.8911 30 1 3.1134 2.7812 1.1133 31 1 2.6385 1.3141 2.0024 32 1 0.5341 3.4160 1.1121 33 1 -0.2962 2.9383 3.3238 34 1 3.3412 2.7557 3.3193 35 1 5.3945 2.3919 5.6263 36 1 5.6773 0.6776 5.2399 37 1 5.5147 1.8704 3.9288 38 1 4.0530 0.2475 7.6649 39 1 3.5367 -1.2918 6.9353 40 1 4.9732 -0.4476 6.3090 41 1 1.3059 -0.5021 6.4156 42 1 -0.7698 -0.1448 4.1303 43 1 -0.8783 0.3818 5.8271 44 1 -1.0537 1.5701 4.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560678692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:21 Heat of formation + Delta-G solvation = 30.423675 kcal Electronic energy + Delta-G solvation = -21317.338398 eV Core-core repulsion = 18427.328472 eV Total energy + Delta-G solvation = -2890.009926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77633 -38.12045 -36.10945 -34.59042 -33.32385 -32.23363 -30.93452 -30.02917 -28.08452 -27.08963 -25.73189 -24.97734 -23.09365 -22.11357 -21.43981 -19.31448 -18.47349 -17.24703 -16.79150 -16.33961 -15.86968 -15.73475 -15.57122 -15.18313 -14.85577 -14.35956 -14.04761 -13.99100 -13.71525 -13.67081 -13.54950 -13.45453 -13.31952 -12.97765 -12.83436 -12.73495 -12.59309 -12.52181 -12.34038 -12.13669 -12.02382 -11.79591 -11.72139 -11.48661 -11.39798 -10.55166 -10.27892 -9.40444 -8.82454 -8.54593 -7.79845 -5.49116 0.22851 0.54089 1.43777 1.46290 1.54540 1.58483 2.50899 2.89275 3.24379 3.76763 3.91814 3.94868 4.02487 4.10899 4.24097 4.39822 4.43390 4.50348 4.60344 4.70816 4.75239 4.75646 4.84574 4.86306 4.89376 4.89913 4.90776 4.93354 5.01059 5.08627 5.12094 5.18112 5.23944 5.38571 5.45544 5.47458 5.51237 5.64845 5.69187 5.78043 5.83782 5.85375 6.02081 6.24715 6.48559 7.17957 7.85560 8.40676 9.14250 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.004898 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.487198 B = 5715.460035 C = 6228.168395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.143 3.857 3 N -0.595 5.595 4 C -0.267 4.267 5 H 0.054 0.946 6 C -0.035 4.035 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.289 1.289 11 H -0.288 1.288 12 C 0.169 3.831 13 C -0.140 4.140 14 C -0.135 4.135 15 C -0.065 4.065 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.109 4.109 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.017 0.983 29 H 0.252 0.748 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 0.085 17.835 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 N -0.316 5.316 4 C -0.397 4.397 5 H 0.071 0.929 6 C -0.233 4.233 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.216 1.216 11 H -0.214 1.214 12 C 0.044 3.956 13 C -0.160 4.160 14 C -0.154 4.154 15 C -0.065 4.065 16 C -0.135 4.135 17 C -0.109 4.109 18 C -0.170 4.170 19 C -0.096 4.096 20 C -0.168 4.168 21 C -0.146 4.146 22 C -0.092 4.092 23 C -0.166 4.166 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.159 0.841 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.800 -0.026 17.716 17.936 hybrid contribution -0.045 0.394 -1.440 1.493 sum -2.845 0.368 16.276 16.527 Atomic orbital electron populations 1.22091 0.98324 0.99854 1.00167 1.20785 0.92026 0.86083 0.99368 1.43963 1.75128 1.11499 1.01001 1.19262 1.35866 0.95458 0.89155 0.92872 1.25929 0.96593 0.98331 1.02406 1.70110 1.36914 1.19524 1.29945 0.85346 0.77288 0.78205 0.80426 1.19195 1.21571 1.21432 1.20256 0.93016 0.94623 0.87718 1.24011 0.99700 0.96862 0.95468 1.21574 0.99106 1.01621 0.93103 1.19012 0.93148 0.97736 0.96621 1.21333 0.93204 1.00445 0.98485 1.19942 0.97018 0.97529 0.96413 1.20864 0.90486 1.03190 1.02468 1.20117 0.94614 0.97166 0.97742 1.20880 0.98956 0.99560 0.97433 1.21080 0.93071 1.00676 0.99748 1.20253 0.97309 0.96056 0.95568 1.20782 0.90277 1.02423 1.03071 0.93589 0.94807 0.92731 0.92143 0.96430 0.93888 0.94643 0.92976 0.88060 0.85152 0.86998 0.89978 0.89900 0.92650 0.89967 0.90748 0.90738 0.84087 0.91608 0.89866 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 10.23 71.98 0.74 -5.40 16 2 C 0.14 7.17 6.08 86.38 0.52 7.69 16 3 N -0.59 -30.87 2.40 -706.35 -1.70 -32.57 16 4 C -0.27 -14.99 9.45 84.03 0.79 -14.19 16 5 H 0.05 2.98 7.90 -2.91 -0.02 2.95 16 6 C -0.04 -2.00 5.02 84.86 0.43 -1.58 16 7 N -0.92 -54.96 11.40 21.65 0.25 -54.71 16 8 Si 0.96 45.16 29.60 68.60 2.03 47.19 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 C 0.17 7.55 4.52 85.63 0.39 7.94 16 13 C -0.14 -5.30 9.36 24.54 0.23 -5.07 16 14 C -0.14 -4.36 8.84 23.65 0.21 -4.15 16 15 C -0.07 -2.08 5.00 -20.12 -0.10 -2.18 16 16 C -0.12 -3.79 7.08 22.52 0.16 -3.63 16 17 C -0.11 -3.08 5.87 -19.90 -0.12 -3.19 16 18 C -0.11 -2.61 9.60 71.24 0.68 -1.93 16 19 C -0.10 -2.41 5.89 -19.81 -0.12 -2.52 16 20 C -0.11 -1.96 9.60 71.24 0.68 -1.28 16 21 C -0.13 -3.19 9.34 22.23 0.21 -2.98 16 22 C -0.09 -2.55 5.91 -19.61 -0.12 -2.66 16 23 C -0.11 -2.43 9.62 71.24 0.69 -1.74 16 24 H 0.05 1.82 7.73 -2.39 -0.02 1.80 16 25 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 3.44 5.52 -2.39 -0.01 3.42 16 28 H 0.02 0.85 7.86 -2.39 -0.02 0.83 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 30 H 0.04 1.66 7.88 -2.39 -0.02 1.64 16 31 H 0.05 2.33 4.91 -2.39 -0.01 2.32 16 32 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.13 3.56 6.97 -2.91 -0.02 3.54 16 34 H 0.11 3.81 6.67 -2.91 -0.02 3.79 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.61 5.93 -2.39 -0.01 1.60 16 37 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 40 H 0.07 1.23 5.93 -2.39 -0.01 1.21 16 41 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 44 H 0.07 1.50 6.47 -2.39 -0.02 1.48 16 Total: -1.00 -64.28 349.28 6.82 -57.46 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.96 Total: 19.51 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 5.28 Total: -36.88 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -1.45 Total: -87.28 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.28 6.82 -57.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560678692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.884 kcal (2) G-P(sol) polarization free energy of solvation -64.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds