Wall clock time and date at job start Mon Mar 30 2020 01:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00598 * 2 1 4 4 H 1.48491 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47124 * 300.00468 * 3 2 1 6 6 H 1.48501 * 109.46741 * 59.99724 * 3 2 1 7 7 C 1.38802 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00360 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47482 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27682 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 C 1.53006 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.50699 * 112.85317 * 48.80620 * 15 14 13 17 17 O 1.20822 * 120.00267 * 129.66021 * 16 15 14 18 18 O 1.34228 * 119.99764 * 309.66869 * 16 15 14 19 19 C 1.53785 * 113.61667 * 277.49698 * 15 14 13 20 20 C 1.53779 * 87.08221 * 220.02357 * 19 15 14 21 21 C 1.53779 * 87.08356 * 25.43015 * 20 19 15 22 22 H 0.96999 * 119.99316 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47402 * 59.99931 * 10 9 7 24 24 H 1.09006 * 109.47116 * 299.99821 * 10 9 7 25 25 H 1.08997 * 109.47380 * 299.99656 * 14 13 11 26 26 H 1.08997 * 109.47403 * 60.00337 * 14 13 11 27 27 H 0.96697 * 117.00158 * 179.97438 * 18 16 15 28 28 H 1.09004 * 113.60990 * 334.57067 * 19 15 14 29 29 H 1.09001 * 113.61275 * 105.47092 * 19 15 14 30 30 H 1.08997 * 113.61076 * 270.88384 * 20 19 15 31 31 H 1.09000 * 113.61399 * 139.98263 * 20 19 15 32 32 H 1.08999 * 113.61931 * 220.01698 * 21 20 19 33 33 H 1.09000 * 113.61452 * 89.11753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7952 -5.5015 -0.0011 13 8 2.8402 -6.3390 0.0043 14 6 2.2605 -7.6702 0.0097 15 6 3.3794 -8.7137 0.0148 16 6 4.4306 -8.4396 1.0593 17 8 4.7720 -9.3161 1.8176 18 8 4.9875 -7.2214 1.1473 19 6 3.9563 -9.0055 -1.3806 20 6 4.0050 -10.4852 -0.9648 21 6 2.8689 -10.1644 0.0207 22 1 -0.4849 0.8401 -0.0004 23 1 3.1242 -3.7315 0.8894 24 1 3.1242 -3.7315 -0.8906 25 1 1.6434 -7.7943 0.8996 26 1 1.6453 -7.8022 -0.8804 27 1 5.6569 -7.0933 1.8332 28 1 3.2580 -8.8029 -2.1927 29 1 4.9398 -8.5660 -1.5470 30 1 4.9373 -10.7714 -0.4781 31 1 3.7129 -11.1718 -1.7594 32 1 2.9746 -10.6606 0.9854 33 1 1.8734 -10.2786 -0.4083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:16 Heat of formation + Delta-G solvation = -180.789219 kcal Electronic energy + Delta-G solvation = -18748.740555 eV Core-core repulsion = 15479.797756 eV Total energy + Delta-G solvation = -3268.942799 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17979 -41.22283 -39.17456 -37.47390 -36.92322 -34.59866 -31.81154 -30.06436 -27.69637 -26.79705 -25.77504 -23.41903 -22.22157 -20.37538 -19.88828 -18.92883 -18.66044 -17.85085 -17.65701 -16.99670 -16.88651 -16.54550 -15.96736 -15.55160 -15.35242 -15.08000 -14.56726 -14.23072 -13.80240 -13.46930 -13.34935 -13.15287 -12.98065 -12.90841 -12.64629 -12.54814 -12.16180 -11.91465 -11.75927 -11.71741 -11.44369 -11.38215 -11.30015 -11.16296 -10.35382 -8.71777 -8.36554 -6.15742 0.98448 1.10251 1.16636 1.42288 1.42946 1.57135 1.89420 2.01317 2.24909 2.98764 3.20154 3.30802 3.35368 3.52843 3.77684 3.97349 4.02508 4.20878 4.25802 4.31901 4.48695 4.58532 4.71022 4.76647 4.97366 4.99422 5.04457 5.25501 5.35648 5.42825 5.56669 6.19659 6.72213 6.97383 7.05618 8.72924 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.038892 B = 0.003624 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.770208 B = 7725.219257 C = 8080.260622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.106 4.106 11 C 0.488 3.512 12 O -0.523 6.523 13 O -0.333 6.333 14 C 0.077 3.923 15 C -0.093 4.093 16 C 0.508 3.492 17 O -0.541 6.541 18 O -0.496 6.496 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.108 4.108 22 H 0.272 0.728 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.424 0.576 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.656 -18.552 -2.107 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.254 4.254 11 C 0.331 3.669 12 O -0.412 6.412 13 O -0.249 6.249 14 C 0.003 3.997 15 C -0.095 4.095 16 C 0.351 3.649 17 O -0.432 6.432 18 O -0.308 6.308 19 C -0.150 4.150 20 C -0.172 4.172 21 C -0.145 4.145 22 H 0.081 0.919 23 H 0.137 0.863 24 H 0.140 0.860 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.285 0.715 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.842 -19.041 -2.201 21.109 hybrid contribution 1.766 1.352 0.771 2.354 sum 10.608 -17.689 -1.430 20.675 Atomic orbital electron populations 1.70172 1.07923 1.28688 1.47854 1.26104 0.95965 1.03240 0.93578 0.84891 0.78642 0.76265 0.78079 1.18031 1.19889 1.19978 1.23229 0.95508 0.91597 1.59113 0.89620 1.85512 1.09428 0.99135 1.97159 1.23053 1.04045 0.90156 1.08168 1.22973 0.84744 0.87519 0.71663 1.90667 1.18331 1.86156 1.46032 1.86613 1.39448 1.15080 1.83774 1.23191 0.94757 0.77539 1.04207 1.21993 0.93334 0.97133 0.97014 1.22702 0.80274 0.79470 0.82462 1.90688 1.62149 1.47183 1.43203 1.84652 1.54918 1.33061 1.58123 1.23082 1.02629 0.96685 0.92606 1.22867 0.98532 0.96471 0.99366 1.23020 1.01031 0.88593 1.01858 0.91881 0.86284 0.86047 0.91147 0.88223 0.71547 0.86568 0.90475 0.90663 0.87978 0.90340 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.51 13.22 21.65 0.29 -54.22 16 2 C 0.02 0.90 5.49 84.86 0.47 1.36 16 3 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -30.41 9.50 67.95 0.65 -29.76 16 8 H 0.09 4.44 7.80 -2.91 -0.02 4.41 16 9 S -0.14 -7.47 20.57 -56.49 -1.16 -8.63 16 10 C -0.11 -4.16 6.27 71.23 0.45 -3.71 16 11 C 0.49 17.93 7.98 71.23 0.57 18.50 16 12 O -0.52 -22.49 15.61 21.94 0.34 -22.14 16 13 O -0.33 -9.67 8.45 -44.80 -0.38 -10.05 16 14 C 0.08 1.78 4.92 71.98 0.35 2.13 16 15 C -0.09 -1.75 1.16 -52.40 -0.06 -1.81 16 16 C 0.51 11.36 7.10 71.24 0.51 11.86 16 17 O -0.54 -14.32 16.59 21.98 0.36 -13.96 16 18 O -0.50 -10.05 11.77 -44.86 -0.53 -10.58 16 19 C -0.11 -1.59 7.22 31.12 0.22 -1.37 16 20 C -0.14 -1.65 7.75 31.12 0.24 -1.41 16 21 C -0.11 -1.53 7.02 31.12 0.22 -1.31 16 22 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 23 H 0.12 4.30 8.14 -2.40 -0.02 4.28 16 24 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 25 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 26 H 0.10 2.04 7.93 -2.39 -0.02 2.02 16 27 H 0.42 4.98 9.10 -74.06 -0.67 4.31 16 28 H 0.12 1.33 7.96 -2.38 -0.02 1.31 16 29 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.31 7.42 -2.39 -0.02 1.30 16 33 H 0.12 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -74.20 306.92 5.02 -69.17 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.46 Total: 11.28 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 3.61 Total: -5.52 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.29 Total: -54.22 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.20 Total: -56.74 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.16 Total: -8.63 kcal Total: -74.20 5.02 -69.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.617 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds