Wall clock time and date at job start Mon Mar 30 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99860 * 2 1 4 4 C 1.50701 * 109.47166 * 275.00250 * 3 2 1 5 5 H 1.07997 * 119.99907 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99931 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00157 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47104 * 59.99753 * 8 6 4 10 10 H 1.48507 * 109.47285 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47231 * 299.99489 * 8 6 4 12 12 S 1.65606 * 119.99647 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40084 * 156.45847 * 12 2 1 14 14 O 1.42100 * 106.40334 * 23.53564 * 12 2 1 15 15 N 1.65602 * 107.21513 * 269.99472 * 12 2 1 16 16 C 1.46503 * 119.99954 * 65.00433 * 15 12 2 17 17 C 1.50701 * 109.46916 * 164.99590 * 16 15 12 18 18 C 1.41381 * 126.57424 * 90.00122 * 17 16 15 19 19 C 1.34520 * 106.83580 * 179.72986 * 18 17 16 20 20 O 1.34302 * 108.42210 * 0.26485 * 19 18 17 21 21 C 1.34302 * 109.47622 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.46910 * 269.99867 * 1 2 3 23 23 H 1.08995 * 109.47564 * 29.99677 * 1 2 3 24 24 H 1.08996 * 109.47512 * 150.00286 * 1 2 3 25 25 H 1.08994 * 109.47455 * 35.00698 * 3 2 1 26 26 H 1.09005 * 109.46704 * 155.00635 * 3 2 1 27 27 H 0.97000 * 119.99970 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99841 * 245.00282 * 15 12 2 29 29 H 1.09007 * 109.47170 * 44.99697 * 16 15 12 30 30 H 1.08999 * 109.46799 * 284.99567 * 16 15 12 31 31 H 1.08002 * 126.58570 * 359.97438 * 18 17 16 32 32 H 1.08004 * 125.78733 * 180.22473 * 19 18 17 33 33 H 1.07999 * 125.79201 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6469 -0.6707 8 14 3.1794 3.5660 -3.4209 9 1 1.8332 3.7721 -4.0129 10 1 3.9218 4.8522 -3.4209 11 1 3.9251 2.5636 -4.2237 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1567 -0.5450 14 8 1.4112 -2.4064 -0.5454 15 7 2.5381 -1.8593 1.5810 16 6 1.3946 -2.1788 2.4393 17 6 1.8802 -2.8758 3.6841 18 6 2.2610 -2.2618 4.8993 19 6 2.6195 -3.2494 5.7393 20 8 2.4824 -4.4219 5.0990 21 6 2.0374 -4.2013 3.8512 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6502 2.0042 0.5895 26 1 3.1858 1.1176 0.4342 27 1 3.9667 4.4806 -0.8472 28 1 3.4388 -1.8968 1.9391 29 1 0.7079 -2.8324 1.9013 30 1 0.8795 -1.2588 2.7155 31 1 2.2602 -1.2032 5.1136 32 1 2.9605 -3.1211 6.7561 33 1 1.8362 -4.9596 3.1090 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049001705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:19 Heat of formation + Delta-G solvation = -84.763334 kcal Electronic energy + Delta-G solvation = -19269.041108 eV Core-core repulsion = 16036.555055 eV Total energy + Delta-G solvation = -3232.486053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.45784 -38.29145 -37.22019 -36.84214 -36.81596 -34.49503 -33.40916 -30.52669 -29.65503 -26.91025 -26.62593 -24.19965 -22.47130 -21.49209 -20.38079 -19.03216 -18.69997 -18.38872 -17.94237 -17.29470 -16.84484 -16.53831 -15.93869 -15.40414 -15.26589 -14.97206 -14.86864 -14.07039 -13.91729 -13.78278 -13.65738 -13.31831 -13.16631 -13.03833 -12.98827 -12.91281 -12.68886 -12.45876 -12.34839 -11.94947 -11.76283 -10.75519 -10.60379 -10.50811 -9.78118 -9.48482 -8.19880 -6.31827 -0.32684 0.86449 1.39898 1.43464 1.50507 1.57745 2.16405 2.30059 2.41667 2.69484 3.11195 3.47370 3.79465 3.94731 4.09031 4.17200 4.41195 4.60802 4.73363 4.76456 4.83358 4.92365 5.09864 5.13654 5.21180 5.29168 5.47587 5.55175 5.70432 5.86466 6.08722 6.14581 6.19074 6.76425 7.37068 8.87500 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.032640 B = 0.004609 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.624745 B = 6073.872269 C = 6377.113302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.272 3.728 4 C -0.551 4.551 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.278 1.278 12 S 2.801 3.199 13 O -1.012 7.012 14 O -1.006 7.006 15 N -1.117 6.117 16 C 0.186 3.814 17 C -0.208 4.208 18 C -0.220 4.220 19 C -0.039 4.039 20 O -0.186 6.186 21 C -0.022 4.022 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.419 0.581 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.236 0.764 33 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -12.624 12.862 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.149 3.851 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.203 1.203 12 S 2.809 3.191 13 O -0.996 6.996 14 O -0.990 6.990 15 N -0.880 5.880 16 C 0.061 3.939 17 C -0.212 4.212 18 C -0.239 4.239 19 C -0.106 4.106 20 O -0.081 6.081 21 C -0.091 4.091 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.254 0.746 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.174 0.826 32 H 0.252 0.748 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.303 -13.208 12.181 18.734 hybrid contribution 0.595 1.100 -0.519 1.354 sum -4.707 -12.109 11.662 17.458 Atomic orbital electron populations 1.21622 0.78031 1.03673 1.02606 1.57471 1.15764 1.21893 1.89330 1.18593 0.90405 0.80317 0.95828 1.21834 1.36302 1.06676 0.94256 0.92950 1.25740 0.94764 0.96758 1.01451 1.70001 1.37834 1.15744 1.32850 0.85643 0.78831 0.77544 0.79914 1.18773 1.20125 1.20336 1.01133 0.72034 0.72495 0.73473 1.93575 1.43062 1.85452 1.77552 1.93498 1.67611 1.60087 1.77788 1.55925 1.15807 1.85518 1.30709 1.19629 0.86784 0.99719 0.87732 1.20458 1.09509 0.94315 0.96869 1.22032 1.06557 1.01596 0.93744 1.24684 1.04543 0.81144 1.00216 1.84103 1.65746 1.34270 1.23999 1.24450 1.01252 0.97769 0.85596 0.90739 0.91191 0.90474 0.95270 0.96652 0.92371 0.74632 0.89044 0.90098 0.82640 0.74770 0.75829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.77 10.68 127.77 1.36 4.13 16 2 N -1.00 -40.82 3.23 -543.24 -1.75 -42.57 16 3 C 0.27 13.82 5.08 85.63 0.43 14.25 16 4 C -0.55 -31.41 9.38 25.60 0.24 -31.17 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.70 5.46 84.65 0.46 1.17 16 7 N -0.92 -54.44 13.29 21.45 0.28 -54.15 16 8 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 9 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 S 2.80 108.97 6.10 -56.49 -0.34 108.63 16 13 O -1.01 -49.40 17.11 -128.00 -2.19 -51.59 16 14 O -1.01 -39.94 16.21 -128.00 -2.07 -42.01 16 15 N -1.12 -32.29 6.05 -190.77 -1.15 -33.44 16 16 C 0.19 4.31 6.76 85.63 0.58 4.89 16 17 C -0.21 -4.36 5.56 -19.94 -0.11 -4.47 16 18 C -0.22 -4.17 10.87 22.19 0.24 -3.93 16 19 C -0.04 -0.61 12.09 66.97 0.81 0.20 16 20 O -0.19 -3.44 10.65 -2.47 -0.03 -3.47 16 21 C -0.02 -0.40 12.01 66.97 0.80 0.41 16 22 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 24 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16 25 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 26 H 0.02 0.85 7.61 -2.38 -0.02 0.83 16 27 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.42 11.40 8.64 -96.74 -0.84 10.56 16 29 H 0.09 1.95 7.75 -2.38 -0.02 1.93 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.23 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.05 305.16 -0.12 -74.16 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.29 Total: 12.16 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.82 Total: -14.52 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -2.62 Total: -130.17 kcal Atomic # 8 Polarization: -92.78 SS G_CDS: -4.29 Total: -97.07 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 108.97 SS G_CDS: -0.34 Total: 108.63 kcal Total: -74.05 -0.12 -74.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049001705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds