Wall clock time and date at job start Mon Mar 30 2020 01:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47234 * 2 1 4 4 C 1.35874 * 126.07613 * 125.26928 * 3 2 1 5 5 C 1.35591 * 107.57719 * 180.12204 * 4 3 2 6 6 O 1.36232 * 126.04808 * 179.90410 * 5 4 3 7 7 S 1.52206 * 113.99361 * 269.70442 * 6 5 4 8 8 O 1.42100 * 104.27196 * 191.07151 * 7 6 5 9 9 O 1.42097 * 104.27950 * 318.92878 * 7 6 5 10 10 C 1.81402 * 104.44832 * 75.00468 * 7 6 5 11 11 C 1.53001 * 109.46924 * 179.97438 * 10 7 6 12 12 C 1.50702 * 109.46882 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99762 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99610 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00158 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46588 * 89.99596 * 16 14 12 18 18 H 1.48492 * 109.47028 * 209.99447 * 16 14 12 19 19 H 1.48496 * 109.46706 * 329.99847 * 16 14 12 20 20 C 1.40112 * 107.89676 * 359.62833 * 5 4 3 21 21 N 1.30872 * 108.35558 * 0.23261 * 20 5 4 22 22 H 1.09001 * 109.46973 * 59.99544 * 1 2 3 23 23 H 1.08994 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46340 * 299.99860 * 1 2 3 25 25 H 1.09007 * 109.46903 * 240.00275 * 2 1 3 26 26 H 1.09001 * 109.46973 * 120.00456 * 2 1 3 27 27 H 1.07998 * 126.21398 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.46829 * 299.99462 * 10 7 6 29 29 H 1.09002 * 109.47084 * 59.99423 * 10 7 6 30 30 H 1.09000 * 109.46969 * 299.99426 * 11 10 7 31 31 H 1.08998 * 109.47182 * 59.99877 * 11 10 7 32 32 H 0.96996 * 119.99320 * 180.02562 * 15 14 12 33 33 H 1.08001 * 125.82108 * 180.19582 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8830 1.9242 0.8966 5 6 3.0753 3.2200 0.5470 6 8 3.8733 4.1149 1.1937 7 16 3.1624 4.9021 2.2853 8 8 4.0809 5.9298 2.6309 9 8 1.8938 5.2115 1.7247 10 6 2.9840 3.7220 3.6513 11 6 2.2752 4.4026 4.8241 12 6 2.1265 3.4220 5.9587 13 1 2.5006 2.4143 5.8540 14 6 1.5139 3.8117 7.1308 15 7 1.3837 2.9557 8.1208 16 14 0.8676 5.5549 7.3122 17 1 -0.5418 5.6110 6.8478 18 1 0.9355 5.9621 8.7386 19 1 1.6954 6.4772 6.4941 20 6 2.3130 3.4739 -0.6009 21 7 1.6815 2.3752 -0.9277 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 3.3338 1.4163 1.7363 28 1 2.3963 2.8666 3.3181 29 1 3.9699 3.3834 3.9700 30 1 2.8634 5.2578 5.1572 31 1 1.2894 4.7415 4.5056 32 1 0.9524 3.2298 8.9452 33 1 2.2558 4.4159 -1.1261 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190272645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:54 Heat of formation + Delta-G solvation = -29.637667 kcal Electronic energy + Delta-G solvation = -19404.153284 eV Core-core repulsion = 16174.057659 eV Total energy + Delta-G solvation = -3230.095624 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.84909 -39.24149 -36.76841 -35.67528 -34.56513 -34.01045 -31.56989 -30.66953 -29.06309 -26.10541 -24.26934 -22.67610 -21.46869 -21.05487 -19.76252 -18.16176 -17.65317 -17.09951 -16.58164 -16.15861 -15.62630 -14.87147 -14.67622 -14.34854 -14.21859 -14.02237 -13.64644 -12.87691 -12.81799 -12.45058 -12.34696 -12.24297 -11.93617 -11.77831 -11.72419 -11.67149 -11.29718 -11.24599 -10.92308 -10.47695 -10.16353 -9.77006 -9.69196 -9.40272 -8.77476 -8.69075 -6.19920 -4.21208 0.50797 1.45430 1.93235 2.33377 2.69099 3.24924 3.32517 3.37107 3.98625 4.17560 4.33591 4.38705 4.48423 4.62016 4.69359 4.86808 5.09155 5.11722 5.22164 5.29118 5.42308 5.44201 5.52191 5.69513 5.87741 6.22060 6.36625 6.56268 6.77567 6.91073 7.25408 7.51476 8.32770 8.80149 9.40022 10.92380 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.006050 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.347801 B = 4627.102239 C = 5598.435861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.358 5.358 4 C 0.068 3.932 5 C -0.074 4.074 6 O -0.642 6.642 7 S 2.574 3.426 8 O -0.940 6.940 9 O -0.960 6.960 10 C -0.607 4.607 11 C -0.005 4.005 12 C -0.520 4.520 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.261 1.261 20 C 0.081 3.919 21 N -0.273 5.273 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.195 0.805 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -6.184 -16.673 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 N -0.141 5.141 4 C -0.083 4.083 5 C -0.129 4.129 6 O -0.598 6.598 7 S 2.672 3.328 8 O -0.938 6.938 9 O -0.958 6.958 10 C -0.737 4.737 11 C -0.043 4.043 12 C -0.559 4.559 13 H 0.095 0.905 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.185 1.185 20 C -0.107 4.107 21 N -0.094 5.094 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.212 0.788 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.644 -6.242 -17.752 18.828 hybrid contribution 0.312 0.814 1.489 1.725 sum 0.956 -5.428 -16.263 17.171 Atomic orbital electron populations 1.22103 0.93143 1.03294 1.04223 1.21885 0.96637 0.75933 1.04463 1.48699 1.34031 1.10765 1.20650 1.22752 0.94908 0.93717 0.96889 1.17615 1.05056 0.88846 1.01364 1.85715 1.55206 1.58472 1.60431 1.06142 0.73868 0.76632 0.76142 1.93588 1.63425 1.53359 1.83446 1.93574 1.44715 1.83437 1.74095 1.30528 1.10791 1.16046 1.16363 1.19379 0.95264 0.97247 0.92448 1.20836 1.39557 0.98639 0.96835 0.90475 1.24981 0.95120 0.97432 0.95550 1.69879 1.43350 1.35006 1.05130 0.86927 0.80241 0.85354 0.77984 1.19683 1.20718 1.18515 1.24130 0.93493 0.98301 0.94815 1.77454 1.22501 0.96155 1.13299 0.90912 0.90285 0.91336 0.89150 0.87813 0.78767 0.85938 0.85155 0.94757 0.95274 0.92366 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.10 37.16 0.38 -0.87 16 2 C 0.13 0.92 7.24 -4.04 -0.03 0.89 16 3 N -0.36 -3.97 3.71 -61.05 -0.23 -4.20 16 4 C 0.07 0.79 10.32 -16.71 -0.17 0.62 16 5 C -0.07 -1.06 5.07 -39.82 -0.20 -1.26 16 6 O -0.64 -9.99 10.22 -52.81 -0.54 -10.53 16 7 S 2.57 46.26 5.17 -107.50 -0.56 45.71 16 8 O -0.94 -19.65 18.09 -67.04 -1.21 -20.86 16 9 O -0.96 -18.81 16.49 -67.04 -1.11 -19.92 16 10 C -0.61 -11.04 5.74 37.16 0.21 -10.83 16 11 C 0.00 -0.11 4.05 -27.88 -0.11 -0.22 16 12 C -0.52 -14.25 9.66 -34.44 -0.33 -14.59 16 13 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 16 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 20 C 0.08 1.11 11.41 -17.26 -0.20 0.91 16 21 N -0.27 -3.59 12.41 30.68 0.38 -3.21 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.20 1.58 7.98 -52.49 -0.42 1.16 16 28 H 0.12 1.96 7.02 -51.92 -0.36 1.60 16 29 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 30 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 31 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.20 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -35.87 300.24 -7.28 -43.15 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.09 Total: -1.98 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -0.56 Total: -23.41 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.93 Total: -33.33 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -2.86 Total: -51.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 46.26 SS G_CDS: -0.56 Total: 45.71 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.87 -7.28 -43.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190272645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.509 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds