Wall clock time and date at job start Mon Mar 30 2020 01:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47234 * 2 1 4 4 C 1.35874 * 126.07613 * 125.26928 * 3 2 1 5 5 C 1.35591 * 107.57719 * 180.12204 * 4 3 2 6 6 O 1.36232 * 126.04808 * 179.90410 * 5 4 3 7 7 S 1.52206 * 113.99361 * 269.70442 * 6 5 4 8 8 O 1.42100 * 104.27196 * 191.07151 * 7 6 5 9 9 O 1.42097 * 104.27950 * 318.92878 * 7 6 5 10 10 C 1.81402 * 104.44832 * 75.00468 * 7 6 5 11 11 C 1.53001 * 109.46924 * 179.97438 * 10 7 6 12 12 C 1.50702 * 109.46882 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99762 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99610 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00158 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46588 * 89.99596 * 16 14 12 18 18 H 1.48492 * 109.47028 * 209.99447 * 16 14 12 19 19 H 1.48496 * 109.46706 * 329.99847 * 16 14 12 20 20 C 1.40112 * 107.89676 * 359.62833 * 5 4 3 21 21 N 1.30872 * 108.35558 * 0.23261 * 20 5 4 22 22 H 1.09001 * 109.46973 * 59.99544 * 1 2 3 23 23 H 1.08994 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46340 * 299.99860 * 1 2 3 25 25 H 1.09007 * 109.46903 * 240.00275 * 2 1 3 26 26 H 1.09001 * 109.46973 * 120.00456 * 2 1 3 27 27 H 1.07998 * 126.21398 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.46829 * 299.99462 * 10 7 6 29 29 H 1.09002 * 109.47084 * 59.99423 * 10 7 6 30 30 H 1.09000 * 109.46969 * 299.99426 * 11 10 7 31 31 H 1.08998 * 109.47182 * 59.99877 * 11 10 7 32 32 H 0.96996 * 119.99320 * 180.02562 * 15 14 12 33 33 H 1.08001 * 125.82108 * 180.19582 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8830 1.9242 0.8966 5 6 3.0753 3.2200 0.5470 6 8 3.8733 4.1149 1.1937 7 16 3.1624 4.9021 2.2853 8 8 4.0809 5.9298 2.6309 9 8 1.8938 5.2115 1.7247 10 6 2.9840 3.7220 3.6513 11 6 2.2752 4.4026 4.8241 12 6 2.1265 3.4220 5.9587 13 1 2.5006 2.4143 5.8540 14 6 1.5139 3.8117 7.1308 15 7 1.3837 2.9557 8.1208 16 14 0.8676 5.5549 7.3122 17 1 -0.5418 5.6110 6.8478 18 1 0.9355 5.9621 8.7386 19 1 1.6954 6.4772 6.4941 20 6 2.3130 3.4739 -0.6009 21 7 1.6815 2.3752 -0.9277 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 3.3338 1.4163 1.7363 28 1 2.3963 2.8666 3.3181 29 1 3.9699 3.3834 3.9700 30 1 2.8634 5.2578 5.1572 31 1 1.2894 4.7415 4.5056 32 1 0.9524 3.2298 8.9452 33 1 2.2558 4.4159 -1.1261 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190272645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:54 Heat of formation + Delta-G solvation = -56.387717 kcal Electronic energy + Delta-G solvation = -19405.313253 eV Core-core repulsion = 16174.057659 eV Total energy + Delta-G solvation = -3231.255594 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.83563 -40.38510 -38.25815 -37.16920 -35.91182 -35.28368 -33.50930 -31.56437 -29.95445 -27.96665 -25.04194 -23.86870 -23.05723 -22.04795 -20.92877 -19.60877 -19.02959 -18.64384 -17.78438 -17.45421 -16.48962 -16.41580 -16.14335 -15.66108 -15.25874 -15.22379 -14.83727 -14.78932 -13.84101 -13.79884 -13.44209 -13.34267 -13.30359 -13.17651 -13.08903 -12.97002 -12.93458 -12.42923 -12.24510 -11.95914 -11.81125 -11.68869 -11.21833 -10.82919 -10.67313 -9.78287 -8.35424 -6.40251 -0.86444 0.51119 0.96846 1.29594 1.32485 1.35560 1.44872 1.61325 2.30600 2.61318 2.99062 3.04318 3.36375 3.61819 3.83269 3.89870 3.98595 4.10091 4.27663 4.33914 4.41210 4.52770 4.57364 4.81697 4.91775 5.06582 5.07648 5.26434 5.37797 5.48040 5.75366 6.17896 6.30795 6.65383 7.24129 8.79655 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.006050 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.347801 B = 4627.102239 C = 5598.435861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.352 5.352 4 C 0.084 3.916 5 C -0.117 4.117 6 O -0.629 6.629 7 S 2.597 3.403 8 O -0.974 6.974 9 O -0.979 6.979 10 C -0.606 4.606 11 C -0.015 4.015 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.016 3.984 15 N -0.938 5.938 16 Si 0.919 3.081 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.250 1.250 20 C 0.068 3.932 21 N -0.290 5.290 22 H 0.056 0.944 23 H 0.105 0.895 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.134 0.866 27 H 0.231 0.769 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.269 0.731 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -6.955 -17.559 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.000 4.000 3 N -0.135 5.135 4 C -0.069 4.069 5 C -0.172 4.172 6 O -0.586 6.586 7 S 2.696 3.304 8 O -0.972 6.972 9 O -0.978 6.978 10 C -0.735 4.735 11 C -0.054 4.054 12 C -0.562 4.562 13 H 0.074 0.926 14 C -0.183 4.183 15 N -0.578 5.578 16 Si 0.742 3.258 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.174 1.174 20 C -0.120 4.120 21 N -0.112 5.112 22 H 0.076 0.924 23 H 0.124 0.876 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.152 0.848 27 H 0.247 0.753 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.675 -7.015 -18.651 19.938 hybrid contribution 0.292 0.853 1.661 1.889 sum 0.967 -6.162 -16.991 18.100 Atomic orbital electron populations 1.22092 0.93539 1.04490 1.02438 1.22375 0.96338 0.74167 1.07070 1.49186 1.33020 1.11617 1.19629 1.23344 0.93654 0.92874 0.97051 1.18042 1.06989 0.89718 1.02469 1.85694 1.54465 1.58832 1.59561 1.05447 0.72951 0.76120 0.75895 1.93538 1.64242 1.55202 1.84216 1.93537 1.45878 1.83858 1.74484 1.30455 1.11730 1.16657 1.14701 1.19354 0.96158 0.96740 0.93159 1.21158 1.38414 0.98601 0.98043 0.92594 1.25801 0.95740 1.01225 0.95499 1.69994 1.44909 1.37018 1.05882 0.86107 0.80196 0.81036 0.78433 1.18681 1.20050 1.17376 1.24433 0.93450 0.99065 0.95068 1.77431 1.22825 0.96625 1.14293 0.92437 0.87646 0.93297 0.87006 0.84794 0.75261 0.83695 0.83225 0.94939 0.94967 0.92182 0.77630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.10 71.98 0.73 -1.39 16 2 C 0.12 1.28 7.24 86.38 0.63 1.90 16 3 N -0.35 -6.90 3.71 -347.06 -1.29 -8.19 16 4 C 0.08 1.69 10.32 83.45 0.86 2.55 16 5 C -0.12 -3.13 5.07 22.11 0.11 -3.02 16 6 O -0.63 -18.59 10.22 -65.30 -0.67 -19.25 16 7 S 2.60 89.96 5.17 -56.49 -0.29 89.66 16 8 O -0.97 -39.94 18.09 -118.57 -2.15 -42.09 16 9 O -0.98 -37.41 16.49 -118.57 -1.96 -39.36 16 10 C -0.61 -20.85 5.74 71.98 0.41 -20.44 16 11 C -0.02 -0.70 4.05 29.85 0.12 -0.58 16 12 C -0.52 -28.47 9.66 25.60 0.25 -28.22 16 13 H 0.06 3.19 7.99 -2.91 -0.02 3.17 16 14 C 0.02 0.91 5.47 84.65 0.46 1.37 16 15 N -0.94 -56.28 13.96 21.45 0.30 -55.99 16 16 Si 0.92 43.16 27.47 68.60 1.88 45.05 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 20 C 0.07 1.78 11.41 85.29 0.97 2.76 16 21 N -0.29 -7.23 12.41 -56.84 -0.71 -7.93 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.13 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.23 2.75 7.98 -2.91 -0.02 2.73 16 28 H 0.14 4.26 7.02 -2.39 -0.02 4.24 16 29 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 30 H 0.03 1.48 7.20 -2.39 -0.02 1.47 16 31 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.21 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -77.12 300.24 0.73 -76.39 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.06 Total: 6.77 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 4.54 Total: -45.06 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.69 Total: -72.11 kcal Atomic # 8 Polarization: -95.93 SS G_CDS: -4.77 Total: -100.70 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Atomic # 16 Polarization: 89.96 SS G_CDS: -0.29 Total: 89.66 kcal Total: -77.12 0.73 -76.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190272645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.998 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds