Wall clock time and date at job start Mon Mar 30 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99702 * 2 1 4 4 O 1.21518 * 120.00125 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.47575 * 134.49436 * 179.97438 * 5 3 2 7 7 C 1.53944 * 86.11731 * 155.35763 * 6 5 3 8 8 N 1.46506 * 113.74274 * 137.95197 * 7 6 5 9 9 C 1.34773 * 119.99969 * 156.64909 * 8 7 6 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 7 12 12 S 1.80989 * 109.47203 * 180.02562 * 11 9 8 13 13 C 1.76206 * 100.00010 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.38794 * 119.99924 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00193 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99992 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46975 * 89.99621 * 17 15 13 19 19 H 1.48497 * 109.47172 * 209.99845 * 17 15 13 20 20 H 1.48497 * 109.46742 * 329.99999 * 17 15 13 21 21 C 1.47812 * 134.45416 * 359.86767 * 5 3 2 22 22 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47273 * 299.99962 * 1 2 3 24 24 H 1.08996 * 109.46981 * 60.00483 * 1 2 3 25 25 H 1.09004 * 113.77027 * 41.06404 * 6 5 3 26 26 H 1.08996 * 113.77596 * 269.66188 * 6 5 3 27 27 H 1.09003 * 113.74626 * 269.15563 * 7 6 5 28 28 H 0.97005 * 119.99811 * 336.92962 * 8 7 6 29 29 H 1.09004 * 109.46762 * 300.00389 * 11 9 8 30 30 H 1.08998 * 109.46924 * 59.99727 * 11 9 8 31 31 H 0.97004 * 119.99966 * 180.02562 * 16 15 13 32 32 H 1.09000 * 113.77162 * 90.38101 * 21 5 3 33 33 H 1.09003 * 113.83503 * 318.91526 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.3868 2.3757 0.0002 7 6 5.3632 1.3732 0.6417 8 7 6.7223 1.4440 0.0993 9 6 7.7644 1.0055 0.8330 10 8 7.5769 0.5518 1.9420 11 6 9.1625 1.0789 0.2753 12 16 10.3316 0.4185 1.4890 13 6 11.8406 0.6211 0.6020 14 1 11.8307 1.0484 -0.3899 15 6 13.0416 0.2307 1.1776 16 7 13.0536 -0.2905 2.3862 17 14 14.6414 0.4448 0.2370 18 1 15.2173 1.7802 0.5375 19 1 15.6013 -0.6118 0.6459 20 1 14.3770 0.3364 -1.2203 21 6 4.4982 0.2709 0.0036 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 4.1142 3.2035 0.6549 26 1 4.6828 2.7003 -0.9973 27 1 5.3400 1.3739 1.7315 28 1 6.8727 1.8104 -0.7862 29 1 9.2195 0.4912 -0.6409 30 1 9.4125 2.1172 0.0571 31 1 13.8931 -0.5631 2.7886 32 1 4.8269 -0.0238 -0.9930 33 1 4.3143 -0.5790 0.6609 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269555174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:56 Heat of formation + Delta-G solvation = -73.870523 kcal Electronic energy + Delta-G solvation = -18034.078987 eV Core-core repulsion = 14802.065282 eV Total energy + Delta-G solvation = -3232.013705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00584 -39.73262 -38.34698 -36.39810 -33.82408 -32.46274 -30.34181 -28.77749 -27.16193 -26.59757 -25.51699 -22.48123 -20.64368 -20.40313 -18.35097 -17.87835 -17.34928 -17.21074 -16.49715 -16.07447 -15.27636 -14.83866 -14.78250 -14.42844 -14.08418 -13.73351 -13.37896 -13.21248 -13.09658 -12.55498 -12.51976 -12.35152 -12.01621 -11.52799 -11.09253 -11.06931 -11.05935 -10.89414 -10.78149 -9.86020 -9.55349 -9.25269 -9.12406 -9.07402 -8.28928 -6.54614 -6.25146 -3.96291 1.61256 2.50694 2.89540 2.95261 3.20291 3.25293 3.28849 3.45417 3.63993 4.11981 4.16960 4.47974 4.76115 4.83657 4.90976 4.93916 5.05536 5.08617 5.10343 5.17431 5.21972 5.36182 5.52167 5.79630 5.81985 5.99943 6.07351 6.40020 7.23477 7.51516 7.56519 7.94281 8.31680 8.44563 9.20395 10.82227 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.064808 B = 0.002765 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.943375 B =10125.556035 C =10253.515887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.674 3.326 4 O -0.573 6.573 5 N -0.631 5.631 6 C 0.125 3.875 7 C 0.118 3.882 8 N -0.728 5.728 9 C 0.536 3.464 10 O -0.511 6.511 11 C -0.154 4.154 12 S -0.060 6.060 13 C -0.536 4.536 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.092 3.908 22 H 0.103 0.897 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.403 0.597 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.269 0.731 32 H 0.093 0.907 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.485 2.343 -7.891 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.430 3.570 4 O -0.462 6.462 5 N -0.374 5.374 6 C 0.003 3.997 7 C 0.011 3.989 8 N -0.383 5.383 9 C 0.322 3.678 10 O -0.384 6.384 11 C -0.305 4.305 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.032 4.032 22 H 0.122 0.878 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.149 0.851 28 H 0.238 0.762 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.186 1.762 -5.874 21.097 hybrid contribution 1.070 0.833 -2.426 2.779 sum -19.116 2.595 -8.300 21.001 Atomic orbital electron populations 1.23219 0.74286 1.03566 1.02726 1.86270 1.24124 1.30815 1.86960 1.17438 0.81390 0.82195 0.75991 1.91009 1.63580 1.35187 1.56450 1.48264 1.00684 1.12252 1.76210 1.23572 0.82747 0.91564 1.01816 1.22888 0.80734 0.94295 1.00996 1.45902 1.05255 1.66499 1.20642 1.20408 0.86033 0.76210 0.85113 1.90722 1.85234 1.43091 1.19387 1.23541 0.95241 1.05716 1.05981 1.85424 0.97387 1.80602 1.19897 1.22856 0.92410 1.48518 1.04643 0.90871 1.24995 0.98981 0.94478 0.95132 1.70013 1.27437 1.38958 1.13840 0.86164 0.81540 0.78089 0.79679 1.20257 1.20753 1.19689 1.23929 0.82554 0.94615 1.02054 0.87846 0.91773 0.91889 0.88623 0.88801 0.85090 0.76243 0.88990 0.88980 0.92140 0.88869 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -4.07 10.55 -40.31 -0.43 -4.50 16 3 C 0.67 8.58 8.92 54.06 0.48 9.06 16 4 O -0.57 -8.78 16.86 -19.29 -0.33 -9.11 16 5 N -0.63 -6.71 3.61 -184.16 -0.67 -7.37 16 6 C 0.12 1.05 8.59 -2.97 -0.03 1.02 16 7 C 0.12 1.16 4.40 -70.14 -0.31 0.85 16 8 N -0.73 -7.82 5.37 -55.33 -0.30 -8.12 16 9 C 0.54 8.81 7.85 -10.98 -0.09 8.72 16 10 O -0.51 -10.56 15.48 5.56 0.09 -10.47 16 11 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 12 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 13 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 14 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 15 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 16 N -0.87 -25.64 13.22 55.49 0.73 -24.90 16 17 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.09 0.85 8.69 -2.83 -0.02 0.82 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 27 H 0.13 1.52 7.50 -51.93 -0.39 1.14 16 28 H 0.40 3.04 8.71 -40.82 -0.36 2.68 16 29 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 30 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -36.12 312.27 -5.99 -42.11 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.09 Total: -1.30 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 1.52 Total: 6.82 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.23 Total: -40.39 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.66 Total: -24.08 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.12 -5.99 -42.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269555174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.762 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds