Wall clock time and date at job start Mon Mar 30 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99702 * 2 1 4 4 O 1.21518 * 120.00125 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.47575 * 134.49436 * 179.97438 * 5 3 2 7 7 C 1.53944 * 86.11731 * 155.35763 * 6 5 3 8 8 N 1.46506 * 113.74274 * 137.95197 * 7 6 5 9 9 C 1.34773 * 119.99969 * 156.64909 * 8 7 6 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 7 12 12 S 1.80989 * 109.47203 * 180.02562 * 11 9 8 13 13 C 1.76206 * 100.00010 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.38794 * 119.99924 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00193 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99992 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46975 * 89.99621 * 17 15 13 19 19 H 1.48497 * 109.47172 * 209.99845 * 17 15 13 20 20 H 1.48497 * 109.46742 * 329.99999 * 17 15 13 21 21 C 1.47812 * 134.45416 * 359.86767 * 5 3 2 22 22 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47273 * 299.99962 * 1 2 3 24 24 H 1.08996 * 109.46981 * 60.00483 * 1 2 3 25 25 H 1.09004 * 113.77027 * 41.06404 * 6 5 3 26 26 H 1.08996 * 113.77596 * 269.66188 * 6 5 3 27 27 H 1.09003 * 113.74626 * 269.15563 * 7 6 5 28 28 H 0.97005 * 119.99811 * 336.92962 * 8 7 6 29 29 H 1.09004 * 109.46762 * 300.00389 * 11 9 8 30 30 H 1.08998 * 109.46924 * 59.99727 * 11 9 8 31 31 H 0.97004 * 119.99966 * 180.02562 * 16 15 13 32 32 H 1.09000 * 113.77162 * 90.38101 * 21 5 3 33 33 H 1.09003 * 113.83503 * 318.91526 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.3868 2.3757 0.0002 7 6 5.3632 1.3732 0.6417 8 7 6.7223 1.4440 0.0993 9 6 7.7644 1.0055 0.8330 10 8 7.5769 0.5518 1.9420 11 6 9.1625 1.0789 0.2753 12 16 10.3316 0.4185 1.4890 13 6 11.8406 0.6211 0.6020 14 1 11.8307 1.0484 -0.3899 15 6 13.0416 0.2307 1.1776 16 7 13.0536 -0.2905 2.3862 17 14 14.6414 0.4448 0.2370 18 1 15.2173 1.7802 0.5375 19 1 15.6013 -0.6118 0.6459 20 1 14.3770 0.3364 -1.2203 21 6 4.4982 0.2709 0.0036 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 4.1142 3.2035 0.6549 26 1 4.6828 2.7003 -0.9973 27 1 5.3400 1.3739 1.7315 28 1 6.8727 1.8104 -0.7862 29 1 9.2195 0.4912 -0.6409 30 1 9.4125 2.1172 0.0571 31 1 13.8931 -0.5631 2.7886 32 1 4.8269 -0.0238 -0.9930 33 1 4.3143 -0.5790 0.6609 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269555174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:56 Heat of formation + Delta-G solvation = -101.978410 kcal Electronic energy + Delta-G solvation = -18035.297837 eV Core-core repulsion = 14802.065282 eV Total energy + Delta-G solvation = -3233.232554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89211 -40.78021 -39.44182 -37.33219 -34.96445 -34.54675 -31.49732 -29.87386 -27.95309 -27.58482 -27.30753 -23.45111 -21.81697 -21.26434 -19.78752 -19.16367 -18.24869 -18.14638 -17.75244 -17.09426 -16.84467 -16.45283 -16.08258 -15.60212 -15.04701 -14.91052 -14.58207 -14.38119 -14.06385 -13.83643 -13.55994 -13.18879 -13.12743 -12.98545 -12.86599 -12.58725 -12.40216 -11.88744 -11.86121 -11.68824 -11.11245 -10.95158 -10.22154 -10.21181 -10.00081 -8.61956 -8.31666 -6.08643 0.81900 1.31351 1.44798 1.49997 1.56912 1.60265 1.63609 2.27816 2.32964 2.70834 3.02861 3.32181 3.35990 3.66826 3.96343 4.09885 4.22870 4.31297 4.32995 4.39202 4.46090 4.48391 4.59891 4.62082 4.67886 4.90263 5.19410 5.41684 5.45840 6.23238 6.36472 6.52181 7.03821 7.10365 7.25384 8.77300 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.064808 B = 0.002765 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.943375 B =10125.556035 C =10253.515887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.668 3.332 4 O -0.606 6.606 5 N -0.634 5.634 6 C 0.132 3.868 7 C 0.117 3.883 8 N -0.697 5.697 9 C 0.541 3.459 10 O -0.561 6.561 11 C -0.130 4.130 12 S -0.155 6.155 13 C -0.543 4.543 14 H 0.085 0.915 15 C 0.012 3.988 16 N -0.912 5.912 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.257 1.257 21 C 0.098 3.902 22 H 0.136 0.864 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.424 0.576 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.270 0.730 32 H 0.117 0.883 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.711 2.942 -10.434 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.289 6.289 3 C 0.424 3.576 4 O -0.498 6.498 5 N -0.377 5.377 6 C 0.011 3.989 7 C 0.010 3.990 8 N -0.352 5.352 9 C 0.327 3.673 10 O -0.438 6.438 11 C -0.281 4.281 12 S 0.073 5.927 13 C -0.691 4.691 14 H 0.103 0.897 15 C -0.192 4.192 16 N -0.549 5.549 17 Si 0.819 3.181 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.181 1.181 21 C -0.025 4.025 22 H 0.154 0.846 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.129 0.871 28 H 0.263 0.737 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.438 2.375 -8.472 22.252 hybrid contribution 0.983 0.655 -1.667 2.043 sum -19.455 3.030 -10.139 22.147 Atomic orbital electron populations 1.23526 0.72560 1.05691 1.02671 1.86276 1.25906 1.30015 1.86655 1.17643 0.81871 0.82219 0.75829 1.90978 1.64424 1.36266 1.58169 1.48378 1.00436 1.13503 1.75373 1.23714 0.81080 0.90731 1.03386 1.22826 0.80088 0.95931 1.00152 1.45491 1.04358 1.64553 1.20791 1.20070 0.86363 0.76192 0.84660 1.90720 1.85755 1.45714 1.21587 1.23381 0.94162 1.06618 1.03955 1.85611 1.00349 1.82084 1.24691 1.23211 0.92820 1.48130 1.04955 0.89729 1.26106 1.03120 0.93974 0.96049 1.70182 1.28421 1.40405 1.15855 0.84978 0.76343 0.78126 0.78692 1.19455 1.20576 1.18084 1.23994 0.81469 0.93958 1.03082 0.84646 0.92071 0.91764 0.88476 0.85616 0.87131 0.73746 0.86706 0.86810 0.92096 0.86554 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.56 113.37 1.20 1.87 16 2 O -0.38 -7.87 10.55 -55.44 -0.59 -8.46 16 3 C 0.67 16.30 8.92 129.79 1.16 17.46 16 4 O -0.61 -18.23 16.86 19.78 0.33 -17.89 16 5 N -0.63 -12.30 3.61 -966.96 -3.49 -15.80 16 6 C 0.13 1.86 8.59 86.49 0.74 2.60 16 7 C 0.12 2.07 4.40 46.75 0.21 2.28 16 8 N -0.70 -13.02 5.37 -447.36 -2.40 -15.43 16 9 C 0.54 17.04 7.85 87.66 0.69 17.72 16 10 O -0.56 -23.36 15.48 -3.03 -0.05 -23.41 16 11 C -0.13 -4.55 6.16 71.24 0.44 -4.11 16 12 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 13 C -0.54 -29.84 9.50 67.95 0.65 -29.19 16 14 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 15 C 0.01 0.68 5.49 84.86 0.47 1.14 16 16 N -0.91 -54.99 13.22 21.65 0.29 -54.71 16 17 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 C 0.10 1.59 8.69 86.45 0.75 2.34 16 22 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.13 1.03 8.11 -2.39 -0.02 1.01 16 27 H 0.11 2.53 7.50 -2.39 -0.02 2.51 16 28 H 0.42 4.58 8.71 -92.70 -0.81 3.77 16 29 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -81.02 312.27 1.58 -79.45 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.33 Total: 8.94 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.29 Total: 12.11 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -5.61 Total: -85.93 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.30 Total: -49.76 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -81.02 1.58 -79.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269555174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.533 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds