Wall clock time and date at job start Mon Mar 30 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 H 1.08999 * 109.47433 * 180.94604 * 3 2 1 5 5 C 1.50700 * 109.47010 * 300.95111 * 3 2 1 6 6 H 1.07997 * 119.99668 * 114.80873 * 5 3 2 7 7 C 1.37875 * 119.99914 * 294.79968 * 5 3 2 8 8 N 1.31518 * 120.00046 * 354.17778 * 7 5 3 9 9 Si 1.86797 * 119.99881 * 174.17296 * 7 5 3 10 10 H 1.48501 * 109.47154 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47029 * 300.00119 * 9 7 5 12 12 H 1.48500 * 109.47263 * 60.00246 * 9 7 5 13 13 N 1.46501 * 109.46973 * 60.95123 * 3 2 1 14 14 S 1.65600 * 120.00152 * 95.42692 * 13 3 2 15 15 O 1.42102 * 104.27860 * 180.88153 * 14 13 3 16 16 O 1.42090 * 104.27894 * 308.74194 * 14 13 3 17 17 C 1.81404 * 104.44739 * 64.81448 * 14 13 3 18 18 C 1.50700 * 109.47084 * 179.97438 * 17 14 13 19 19 C 1.41385 * 126.80084 * 89.99820 * 18 17 14 20 20 C 1.35455 * 103.98249 * 180.02562 * 19 18 17 21 21 O 1.34045 * 106.44671 * 0.02562 * 20 19 18 22 22 N 1.20916 * 111.56668 * 359.70935 * 21 20 19 23 23 H 1.09002 * 109.46651 * 185.12054 * 1 2 3 24 24 H 1.09000 * 109.46837 * 305.11813 * 1 2 3 25 25 H 1.08995 * 109.47310 * 65.11780 * 1 2 3 26 26 H 1.09004 * 109.47593 * 240.00159 * 2 1 3 27 27 H 1.09007 * 109.47598 * 120.00147 * 2 1 3 28 28 H 0.97002 * 119.99757 * 355.77608 * 8 7 5 29 29 H 0.97000 * 119.99874 * 275.42782 * 13 3 2 30 30 H 1.08997 * 109.47103 * 299.99860 * 17 14 13 31 31 H 1.09004 * 109.47325 * 59.99928 * 17 14 13 32 32 H 1.07993 * 128.00704 * 0.03896 * 19 18 17 33 33 H 1.08000 * 126.77192 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0170 5 6 1.5185 2.1597 -1.2185 6 1 0.8320 2.9857 -1.1062 7 6 1.9180 1.7613 -2.4765 8 7 2.8400 0.8330 -2.6105 9 14 1.1497 2.5399 -3.9907 10 1 1.7465 1.9418 -5.2118 11 1 -0.3148 2.2940 -3.9847 12 1 1.4061 4.0026 -3.9793 13 7 1.5705 2.1264 1.2075 14 16 2.5451 2.2102 2.5437 15 8 1.7657 2.9118 3.5026 16 8 2.9477 0.8662 2.7686 17 6 3.9571 3.2171 2.0115 18 6 4.9264 3.3675 3.1556 19 6 6.0123 2.5158 3.4632 20 6 6.5639 3.0745 4.5670 21 8 5.8310 4.1607 4.8492 22 7 4.9324 4.3095 4.0540 23 1 -0.3633 -1.0236 0.0917 24 1 -0.3633 0.5912 0.8406 25 1 -0.3633 0.4324 -0.9322 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.2827 0.4724 -1.8263 29 1 0.6887 2.5302 1.2243 30 1 4.4559 2.7295 1.1740 31 1 3.6055 4.2013 1.7020 32 1 6.3287 1.6261 2.9392 33 1 7.4239 2.7151 5.1125 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330879515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:04 Heat of formation + Delta-G solvation = -43.362578 kcal Electronic energy + Delta-G solvation = -19659.417688 eV Core-core repulsion = 16428.726907 eV Total energy + Delta-G solvation = -3230.690781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.18194 -38.51458 -37.99326 -37.14921 -36.11668 -34.19577 -32.90451 -32.22391 -30.39032 -27.79711 -25.65158 -24.36712 -22.67371 -21.98924 -20.38928 -19.49802 -19.02634 -18.94924 -18.42087 -17.42036 -17.04250 -16.11955 -15.86927 -15.50676 -15.21066 -14.87711 -14.83491 -14.54595 -14.37642 -13.81279 -13.35888 -13.28410 -13.23954 -12.94218 -12.83118 -12.61970 -12.54912 -12.24631 -12.08543 -11.92123 -11.72099 -11.22600 -10.81970 -10.70933 -10.44207 -10.06804 -8.53491 -6.28486 -0.95772 0.46510 1.04621 1.60949 1.65703 1.69821 1.84742 2.25990 2.53441 2.62379 2.81205 3.05573 3.23278 3.43378 3.88627 3.96097 4.17839 4.22879 4.42585 4.46906 4.59294 4.65949 4.69114 4.96458 5.07176 5.24675 5.35953 5.52588 5.58236 5.88422 6.21099 6.37657 6.64184 7.10352 7.46634 8.83338 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.005616 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.613642 B = 4984.227624 C = 5419.677520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.139 4.139 3 C 0.266 3.734 4 H 0.025 0.975 5 C -0.602 4.602 6 H 0.060 0.940 7 C -0.015 4.015 8 N -0.931 5.931 9 Si 1.105 2.895 10 H -0.290 1.290 11 H -0.274 1.274 12 H -0.274 1.274 13 N -1.093 6.093 14 S 2.627 3.373 15 O -0.990 6.990 16 O -0.976 6.976 17 C -0.541 4.541 18 C -0.019 4.019 19 C -0.244 4.244 20 C -0.027 4.027 21 O 0.113 5.887 22 N -0.381 5.381 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.417 0.583 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.198 0.802 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 3.098 9.970 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.160 3.840 4 H 0.042 0.958 5 C -0.642 4.642 6 H 0.079 0.921 7 C -0.215 4.215 8 N -0.568 5.568 9 Si 0.929 3.071 10 H -0.216 1.216 11 H -0.200 1.200 12 H -0.199 1.199 13 N -0.853 5.853 14 S 2.719 3.281 15 O -0.980 6.980 16 O -0.966 6.966 17 C -0.670 4.670 18 C -0.177 4.177 19 C -0.266 4.266 20 C -0.108 4.108 21 O 0.042 5.958 22 N -0.083 5.083 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.252 0.748 30 H 0.183 0.817 31 H 0.176 0.824 32 H 0.215 0.785 33 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 5.874 3.641 9.352 11.628 hybrid contribution 0.386 -0.240 0.596 0.750 sum 6.260 3.402 9.948 12.236 Atomic orbital electron populations 1.21462 0.95283 0.99985 1.01405 1.21985 0.97700 0.98527 0.99667 1.18503 0.93361 0.89458 0.82692 0.95779 1.22271 1.30945 1.18843 0.92092 0.92133 1.26842 0.95534 0.95462 1.03706 1.70911 1.24419 1.27577 1.33907 0.83049 0.75800 0.75561 0.72699 1.21594 1.19969 1.19927 1.55303 1.29135 1.70693 1.30196 1.04347 0.75649 0.74902 0.73190 1.93526 1.67881 1.76319 1.60289 1.93540 1.84237 1.34088 1.84704 1.28981 1.15394 1.18435 1.04210 1.22749 1.00820 0.96009 0.98078 1.23284 0.97015 1.04848 1.01450 1.27118 0.99462 0.86783 0.97398 1.84799 1.30239 1.39751 1.41056 1.73930 1.08611 1.22462 1.03279 0.93407 0.93195 0.93134 0.92963 0.93813 0.92546 0.74771 0.81701 0.82442 0.78462 0.70359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.47 71.98 0.68 -4.29 16 2 C -0.14 -6.19 5.59 30.59 0.17 -6.02 16 3 C 0.27 11.83 1.99 44.25 0.09 11.92 16 4 H 0.02 1.11 6.52 -2.39 -0.02 1.09 16 5 C -0.60 -29.19 7.48 25.60 0.19 -29.00 16 6 H 0.06 2.88 7.82 -2.91 -0.02 2.85 16 7 C -0.01 -0.75 5.26 84.65 0.45 -0.31 16 8 N -0.93 -50.81 12.90 21.45 0.28 -50.53 16 9 Si 1.11 45.85 29.91 68.60 2.05 47.90 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 13 N -1.09 -42.01 4.68 -172.52 -0.81 -42.82 16 14 S 2.63 96.09 5.36 -56.49 -0.30 95.78 16 15 O -0.99 -40.52 18.08 -127.65 -2.31 -42.83 16 16 O -0.98 -39.85 17.14 -127.65 -2.19 -42.04 16 17 C -0.54 -16.77 6.55 71.24 0.47 -16.30 16 18 C -0.02 -0.56 6.59 43.58 0.29 -0.27 16 19 C -0.24 -5.43 11.12 22.40 0.25 -5.18 16 20 C -0.03 -0.42 12.30 67.18 0.83 0.40 16 21 O 0.11 2.65 11.20 71.59 0.80 3.45 16 22 N -0.38 -11.77 12.07 -49.55 -0.60 -12.37 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.85 7.23 -2.39 -0.02 1.84 16 25 H 0.05 2.13 7.38 -2.39 -0.02 2.11 16 26 H 0.05 2.53 6.27 -2.38 -0.01 2.52 16 27 H 0.04 1.91 7.46 -2.38 -0.02 1.89 16 28 H 0.26 14.34 6.03 -92.71 -0.56 13.78 16 29 H 0.42 15.02 8.43 -96.75 -0.82 14.21 16 30 H 0.17 4.72 7.44 -2.39 -0.02 4.70 16 31 H 0.16 4.55 8.14 -2.39 -0.02 4.53 16 32 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.28 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -69.69 295.99 0.87 -68.82 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.54 Total: 23.69 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 3.41 Total: -49.06 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -1.13 Total: -105.72 kcal Atomic # 8 Polarization: -77.72 SS G_CDS: -3.69 Total: -81.41 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.05 Total: 47.90 kcal Atomic # 16 Polarization: 96.09 SS G_CDS: -0.30 Total: 95.78 kcal Total: -69.69 0.87 -68.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.456 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds