Wall clock time and date at job start Mon Mar 30 2020 01:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46728 * 90.00208 * 8 6 4 10 10 H 1.48498 * 109.46997 * 209.99903 * 8 6 4 11 11 H 1.48494 * 109.47182 * 330.00149 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42099 * 104.27638 * 206.07118 * 14 12 2 16 16 O 1.42103 * 104.27623 * 333.92878 * 14 12 2 17 17 C 1.81395 * 104.45004 * 90.00099 * 14 12 2 18 18 C 1.50693 * 109.47252 * 180.02562 * 17 14 12 19 19 C 1.41376 * 126.80553 * 89.99785 * 18 17 14 20 20 C 1.35454 * 103.98762 * 180.02562 * 19 18 17 21 21 O 1.34032 * 106.44746 * 359.97438 * 20 19 18 22 22 N 1.20925 * 111.56469 * 359.71661 * 21 20 19 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 26 26 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 28 28 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 29 29 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 30 30 H 1.09007 * 109.46966 * 300.00032 * 17 14 12 31 31 H 1.09004 * 109.46911 * 59.99837 * 17 14 12 32 32 H 1.07997 * 128.00888 * 0.03782 * 19 18 17 33 33 H 1.08001 * 126.77575 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.6306 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.7432 -0.5614 -3.5156 16 8 2.6122 1.4795 -2.1235 17 6 4.6649 -0.1731 -1.7060 18 6 5.6356 0.5188 -2.6278 19 6 6.1211 1.8412 -2.5086 20 6 6.9528 1.9815 -3.5685 21 8 6.9280 0.8145 -4.2274 22 7 6.1978 0.0153 -3.6885 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1609 3.4843 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9863 29 1 1.5295 -2.5969 -0.4707 30 1 4.7758 0.2248 -0.6972 31 1 4.8700 -1.2436 -1.6989 32 1 5.8839 2.5707 -1.7484 33 1 7.5234 2.8601 -3.8309 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330901953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:53 Heat of formation + Delta-G solvation = -2.892910 kcal Electronic energy + Delta-G solvation = -19775.153913 eV Core-core repulsion = 16546.218028 eV Total energy + Delta-G solvation = -3228.935885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.07802 -36.67025 -36.24266 -35.43133 -34.95141 -32.67611 -31.87525 -29.23106 -28.99398 -25.57109 -25.24190 -23.28034 -21.58426 -20.74272 -18.42415 -17.92564 -17.70199 -16.94744 -16.52095 -15.92118 -15.55253 -15.12361 -14.65527 -13.73505 -13.50251 -13.41374 -13.18195 -12.73305 -12.65586 -12.03287 -11.85729 -11.63264 -11.44548 -11.42164 -11.39933 -11.24506 -11.00810 -10.94021 -10.45659 -10.25873 -10.14713 -9.94310 -9.70841 -9.28311 -8.54985 -8.00318 -6.16654 -4.26595 0.60441 1.42308 2.15260 3.10485 3.19347 3.24565 3.27895 3.31186 3.86875 4.23066 4.29904 4.41126 4.71708 5.01647 5.13507 5.16972 5.22421 5.50038 5.56900 5.67534 5.93608 6.14861 6.29372 6.61704 6.82943 6.86994 7.08159 7.39050 7.55338 7.71718 7.98285 8.12317 8.18386 8.77066 9.40676 10.88093 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.006095 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.842340 B = 4592.875398 C = 5119.701083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.264 3.736 3 H 0.062 0.938 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.979 5.979 13 C 0.103 3.897 14 S 2.611 3.389 15 O -0.963 6.963 16 O -0.947 6.947 17 C -0.561 4.561 18 C 0.018 3.982 19 C -0.220 4.220 20 C -0.062 4.062 21 O 0.108 5.892 22 N -0.350 5.350 23 H 0.093 0.907 24 H 0.014 0.986 25 H 0.033 0.967 26 H 0.265 0.735 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.182 0.818 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 0.731 -7.319 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.161 3.839 3 H 0.080 0.920 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.819 5.819 13 C -0.043 4.043 14 S 2.700 3.300 15 O -0.953 6.953 16 O -0.937 6.937 17 C -0.686 4.686 18 C -0.141 4.141 19 C -0.242 4.242 20 C -0.143 4.143 21 O 0.038 5.962 22 N -0.052 5.052 23 H 0.111 0.889 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.199 0.801 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.519 0.115 -8.501 12.036 hybrid contribution 0.772 -0.052 2.119 2.256 sum 9.291 0.063 -6.383 11.272 Atomic orbital electron populations 1.22030 0.97596 0.99768 1.00877 1.18825 0.92285 0.92886 0.79906 0.92025 1.21424 1.32393 1.13350 0.90254 0.91781 1.24932 0.94826 0.94942 0.99019 1.69881 1.35823 1.22519 1.23962 0.86533 0.78622 0.79994 0.82470 1.20634 1.21064 1.19854 1.57497 1.62472 1.21756 1.40204 1.21261 0.99407 0.81642 1.01993 1.05072 0.75882 0.74728 0.74277 1.93546 1.83638 1.75657 1.42458 1.93575 1.80379 1.33571 1.86213 1.29393 1.21583 1.09490 1.08096 1.22593 1.01969 0.93780 0.95796 1.22931 1.01145 0.97495 1.02625 1.26073 1.02331 0.91974 0.93892 1.84839 1.48676 1.18493 1.44208 1.73921 1.06211 1.15153 1.09946 0.88859 0.96664 0.94813 0.92509 0.93426 0.93011 0.89991 0.82332 0.83872 0.80085 0.76122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.97 37.16 0.33 -3.03 16 2 C 0.26 6.27 2.57 -69.08 -0.18 6.09 16 3 H 0.06 1.59 6.87 -51.93 -0.36 1.24 16 4 C -0.53 -13.23 7.99 -34.44 -0.28 -13.51 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.69 5.30 -17.81 -0.09 1.59 16 7 N -0.88 -23.62 11.32 55.43 0.63 -22.99 16 8 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.98 -19.99 2.99 -115.85 -0.35 -20.33 16 13 C 0.10 1.82 9.19 59.85 0.55 2.37 16 14 S 2.61 50.96 5.35 -107.50 -0.57 50.38 16 15 O -0.96 -20.34 17.09 -57.54 -0.98 -21.33 16 16 O -0.95 -20.97 16.57 -57.54 -0.95 -21.92 16 17 C -0.56 -9.01 6.77 36.00 0.24 -8.76 16 18 C 0.02 0.28 6.59 -82.10 -0.54 -0.26 16 19 C -0.22 -2.80 11.12 -39.38 -0.44 -3.24 16 20 C -0.06 -0.61 12.30 29.74 0.37 -0.25 16 21 O 0.11 1.41 11.20 17.20 0.19 1.61 16 22 N -0.35 -5.66 12.07 33.42 0.40 -5.26 16 23 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 26 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 29 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 30 H 0.16 2.36 8.14 -51.92 -0.42 1.94 16 31 H 0.14 2.06 8.14 -51.92 -0.42 1.63 16 32 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 297.99 15.07 4.49 4.49 Total: -1.00 -32.17 297.99 -6.09 -38.27 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.90 Total: 1.33 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.03 Total: -19.00 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.68 Total: -48.58 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.74 Total: -41.64 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.57 Total: 50.38 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.17 -6.09 -38.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.376 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds