Wall clock time and date at job start Mon Mar 30 2020 01:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46728 * 90.00208 * 8 6 4 10 10 H 1.48498 * 109.46997 * 209.99903 * 8 6 4 11 11 H 1.48494 * 109.47182 * 330.00149 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42099 * 104.27638 * 206.07118 * 14 12 2 16 16 O 1.42103 * 104.27623 * 333.92878 * 14 12 2 17 17 C 1.81395 * 104.45004 * 90.00099 * 14 12 2 18 18 C 1.50693 * 109.47252 * 180.02562 * 17 14 12 19 19 C 1.41376 * 126.80553 * 89.99785 * 18 17 14 20 20 C 1.35454 * 103.98762 * 180.02562 * 19 18 17 21 21 O 1.34032 * 106.44746 * 359.97438 * 20 19 18 22 22 N 1.20925 * 111.56469 * 359.71661 * 21 20 19 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 26 26 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 28 28 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 29 29 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 30 30 H 1.09007 * 109.46966 * 300.00032 * 17 14 12 31 31 H 1.09004 * 109.46911 * 59.99837 * 17 14 12 32 32 H 1.07997 * 128.00888 * 0.03782 * 19 18 17 33 33 H 1.08001 * 126.77575 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.6306 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.7432 -0.5614 -3.5156 16 8 2.6122 1.4795 -2.1235 17 6 4.6649 -0.1731 -1.7060 18 6 5.6356 0.5188 -2.6278 19 6 6.1211 1.8412 -2.5086 20 6 6.9528 1.9815 -3.5685 21 8 6.9280 0.8145 -4.2274 22 7 6.1978 0.0153 -3.6885 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1609 3.4843 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9863 29 1 1.5295 -2.5969 -0.4707 30 1 4.7758 0.2248 -0.6972 31 1 4.8700 -1.2436 -1.6989 32 1 5.8839 2.5707 -1.7484 33 1 7.5234 2.8601 -3.8309 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330901953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:52 Heat of formation + Delta-G solvation = -26.260230 kcal Electronic energy + Delta-G solvation = -19776.167196 eV Core-core repulsion = 16546.218028 eV Total energy + Delta-G solvation = -3229.949168 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.13551 -38.31046 -37.94099 -37.06052 -36.05600 -34.52455 -32.86299 -30.96632 -30.30750 -27.26094 -27.03758 -24.31425 -22.83005 -22.33439 -19.91567 -19.03025 -18.91202 -18.52224 -18.27932 -17.38870 -17.20483 -16.54320 -16.06490 -15.27588 -14.90107 -14.72121 -14.49185 -14.38490 -13.76532 -13.71960 -13.46352 -13.27223 -13.18995 -12.97300 -12.81645 -12.73814 -12.70352 -12.50105 -12.17690 -12.12708 -11.89205 -11.29181 -10.96948 -10.70462 -10.49231 -9.65661 -8.09227 -6.25075 -0.89824 0.50123 1.09230 1.46636 1.49257 1.57574 1.69184 2.30382 2.45561 2.65608 2.90847 3.08130 3.19341 3.46948 3.92835 4.03528 4.08124 4.24523 4.51280 4.68861 4.71046 4.79181 4.97991 4.99809 5.00246 5.14855 5.24691 5.60254 5.67888 5.82901 6.07834 6.27617 6.85121 7.13698 7.45394 8.95410 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.006095 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.842340 B = 4592.875398 C = 5119.701083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.268 3.732 3 H 0.034 0.966 4 C -0.537 4.537 5 H 0.074 0.926 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.987 5.987 13 C 0.095 3.905 14 S 2.615 3.385 15 O -0.984 6.984 16 O -0.983 6.983 17 C -0.539 4.539 18 C -0.017 4.017 19 C -0.245 4.245 20 C -0.028 4.028 21 O 0.112 5.888 22 N -0.380 5.380 23 H 0.071 0.929 24 H 0.017 0.983 25 H 0.043 0.957 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.196 0.804 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 0.356 -7.442 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.052 0.948 4 C -0.577 4.577 5 H 0.092 0.908 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.827 5.827 13 C -0.050 4.050 14 S 2.709 3.291 15 O -0.974 6.974 16 O -0.973 6.973 17 C -0.668 4.668 18 C -0.175 4.175 19 C -0.268 4.268 20 C -0.108 4.108 21 O 0.041 5.959 22 N -0.082 5.082 23 H 0.090 0.910 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.213 0.787 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 10.466 -0.287 -8.645 13.578 hybrid contribution 0.258 0.128 2.050 2.071 sum 10.724 -0.159 -6.594 12.591 Atomic orbital electron populations 1.21939 0.97914 1.00045 0.99931 1.18528 0.92133 0.91897 0.81087 0.94773 1.21692 1.32014 1.13396 0.90549 0.90783 1.25684 0.95083 0.95560 1.01813 1.70015 1.37109 1.23941 1.24446 0.85559 0.77881 0.79257 0.78929 1.20263 1.21437 1.18928 1.57345 1.63723 1.22659 1.38951 1.21463 1.00704 0.80350 1.02498 1.04704 0.76996 0.73659 0.73699 1.93511 1.84766 1.75699 1.43454 1.93524 1.81833 1.35431 1.86503 1.29040 1.18193 1.11009 1.08549 1.22791 1.02937 0.95426 0.96342 1.23287 1.02306 0.96719 1.04466 1.27085 1.00385 0.91766 0.91593 1.84791 1.47741 1.19371 1.44032 1.73918 1.07287 1.16666 1.10371 0.90985 0.96412 0.93826 0.92632 0.93048 0.90483 0.89920 0.81292 0.82135 0.78683 0.70454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.63 8.97 71.98 0.65 -5.98 16 2 C 0.27 12.84 2.57 44.25 0.11 12.95 16 3 H 0.03 1.83 6.87 -2.39 -0.02 1.81 16 4 C -0.54 -26.32 7.99 25.60 0.20 -26.12 16 5 H 0.07 3.41 7.33 -2.91 -0.02 3.39 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -49.54 11.32 21.45 0.24 -49.30 16 8 Si 0.96 40.01 29.54 68.60 2.03 42.04 16 9 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 12 N -0.99 -40.09 2.99 -520.43 -1.56 -41.65 16 13 C 0.10 3.26 9.19 127.77 1.17 4.44 16 14 S 2.62 101.98 5.35 -56.49 -0.30 101.68 16 15 O -0.98 -41.44 17.09 -127.65 -2.18 -43.62 16 16 O -0.98 -44.41 16.57 -127.65 -2.12 -46.52 16 17 C -0.54 -16.74 6.77 71.23 0.48 -16.26 16 18 C -0.02 -0.52 6.59 43.57 0.29 -0.23 16 19 C -0.25 -5.71 11.12 22.40 0.25 -5.46 16 20 C -0.03 -0.45 12.30 67.18 0.83 0.37 16 21 O 0.11 2.65 11.20 71.70 0.80 3.45 16 22 N -0.38 -11.74 12.07 -49.55 -0.60 -12.34 16 23 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 24 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.04 1.93 7.67 -2.39 -0.02 1.91 16 26 H 0.26 13.64 8.31 -92.71 -0.77 12.86 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 2.22 7.79 -2.39 -0.02 2.20 16 29 H 0.08 2.81 7.02 -2.38 -0.02 2.79 16 30 H 0.17 4.86 8.14 -2.39 -0.02 4.84 16 31 H 0.16 4.36 8.14 -2.39 -0.02 4.34 16 32 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.28 0.87 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -70.03 297.99 1.87 -68.16 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.12 Total: 12.99 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.43 Total: -34.89 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -1.91 Total: -103.29 kcal Atomic # 8 Polarization: -83.19 SS G_CDS: -3.49 Total: -86.69 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 101.98 SS G_CDS: -0.30 Total: 101.68 kcal Total: -70.03 1.87 -68.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.904 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds