Wall clock time and date at job start Mon Mar 30 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47153 * 2 1 4 4 C 1.36942 * 120.00218 * 293.77077 * 3 2 1 5 5 H 1.07998 * 119.99584 * 149.37942 * 4 3 2 6 6 C 1.38815 * 119.99872 * 329.37946 * 4 3 2 7 7 N 1.31614 * 119.99719 * 336.91552 * 6 4 3 8 8 Si 1.86795 * 119.99734 * 156.90957 * 6 4 3 9 9 H 1.48501 * 109.47267 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46721 * 120.00251 * 8 6 4 11 11 H 1.48489 * 109.47307 * 240.00076 * 8 6 4 12 12 S 1.65602 * 119.99786 * 113.49376 * 3 2 1 13 13 O 1.42105 * 104.27761 * 206.07271 * 12 3 2 14 14 O 1.42100 * 104.27980 * 333.92976 * 12 3 2 15 15 C 1.81403 * 104.44916 * 90.00217 * 12 3 2 16 16 C 1.50703 * 109.47096 * 179.97438 * 15 12 3 17 17 C 1.35448 * 126.77326 * 89.99783 * 16 15 12 18 18 C 1.41377 * 103.98255 * 179.97438 * 17 16 15 19 19 C 1.50701 * 126.80362 * 180.02562 * 18 17 16 20 20 N 1.30172 * 106.39821 * 0.02562 * 18 17 16 21 21 O 1.20924 * 111.60273 * 359.72824 * 20 18 17 22 22 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47202 * 300.00234 * 1 2 3 24 24 H 1.09009 * 109.46956 * 59.99919 * 1 2 3 25 25 H 1.09001 * 109.47089 * 240.00298 * 2 1 3 26 26 H 1.08996 * 109.46895 * 120.00448 * 2 1 3 27 27 H 0.97001 * 119.99735 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.46823 * 299.99822 * 15 12 3 29 29 H 1.09001 * 109.47221 * 59.99822 * 15 12 3 30 30 H 1.08002 * 128.01318 * 359.97438 * 17 16 15 31 31 H 1.08997 * 109.47424 * 89.99663 * 19 18 17 32 32 H 1.09004 * 109.47473 * 210.00013 * 19 18 17 33 33 H 1.09009 * 109.46966 * 329.99632 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7959 2.1861 -1.0853 5 1 1.6825 3.2519 -0.9529 6 6 1.7163 1.6321 -2.3556 7 7 2.2813 0.4694 -2.6030 8 14 0.8071 2.5367 -3.7137 9 1 0.2660 3.8133 -3.1820 10 1 1.7433 2.8232 -4.8303 11 1 -0.3101 1.6930 -4.2086 12 16 2.8334 1.9712 1.3153 13 8 2.6072 3.3733 1.2677 14 8 2.3579 1.1889 2.4021 15 6 4.5750 1.5955 0.9745 16 6 5.4280 2.0906 2.1140 17 6 5.7778 1.3993 3.2250 18 6 6.5711 2.3107 3.9589 19 6 7.2306 2.0642 5.2913 20 7 6.6191 3.4052 3.2558 21 8 5.9944 3.3003 2.2257 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2253 0.0821 -3.4906 28 1 4.7001 0.5180 0.8680 29 1 4.8795 2.0896 0.0518 30 1 5.5121 0.3863 3.4891 31 1 8.2302 1.6595 5.1326 32 1 7.3017 3.0029 5.8408 33 1 6.6370 1.3518 5.8643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331103124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:31 Heat of formation + Delta-G solvation = -10.174014 kcal Electronic energy + Delta-G solvation = -19740.898727 eV Core-core repulsion = 16511.647109 eV Total energy + Delta-G solvation = -3229.251617 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.57347 -36.32685 -35.69148 -34.53101 -34.47679 -33.01686 -32.07406 -29.39871 -28.51825 -27.43584 -25.11060 -22.76630 -21.70660 -20.01823 -18.53153 -17.51194 -17.02902 -16.83046 -16.51408 -15.24623 -14.94148 -14.64976 -14.23641 -13.81301 -13.33655 -13.30505 -13.02288 -12.84770 -12.46299 -12.39008 -12.17772 -11.95838 -11.42162 -11.11526 -11.05855 -10.83195 -10.70870 -10.69868 -10.56397 -10.43959 -10.26684 -9.89507 -9.77042 -9.55140 -8.78483 -8.06022 -6.79179 -4.26842 1.27442 1.94395 2.50589 2.97802 3.06131 3.13695 3.36055 3.78220 4.17257 4.40365 4.48588 4.68070 5.11170 5.22544 5.41571 5.42426 5.49173 5.65313 5.80425 5.87685 5.99978 6.08687 6.22001 6.27000 6.31002 6.40537 6.61106 6.83660 6.99231 7.20098 7.36179 8.10032 8.41814 8.54422 8.92772 10.07593 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.005711 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.775552 B = 4901.647653 C = 5272.611092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.106 3.894 3 N -0.785 5.785 4 C -0.215 4.215 5 H 0.120 0.880 6 C 0.034 3.966 7 N -0.808 5.808 8 Si 0.927 3.073 9 H -0.258 1.258 10 H -0.275 1.275 11 H -0.273 1.273 12 S 2.433 3.567 13 O -0.977 6.977 14 O -0.997 6.997 15 C -0.584 4.584 16 C 0.007 3.993 17 C -0.247 4.247 18 C 0.013 3.987 19 C -0.071 4.071 20 N -0.374 5.374 21 O 0.096 5.904 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.280 0.720 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.173 0.827 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -3.306 2.797 5.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 N -0.607 5.607 4 C -0.368 4.368 5 H 0.137 0.863 6 C -0.182 4.182 7 N -0.446 5.446 8 Si 0.751 3.249 9 H -0.181 1.181 10 H -0.200 1.200 11 H -0.198 1.198 12 S 2.533 3.467 13 O -0.966 6.966 14 O -0.986 6.986 15 C -0.697 4.697 16 C -0.058 4.058 17 C -0.269 4.269 18 C -0.145 4.145 19 C -0.129 4.129 20 N -0.082 5.082 21 O 0.032 5.968 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.190 0.810 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.555 -1.867 3.940 5.626 hybrid contribution 0.139 -0.846 -0.988 1.309 sum 3.694 -2.713 2.952 5.451 Atomic orbital electron populations 1.21884 0.96660 1.00014 1.01920 1.21515 0.94258 0.83051 1.03186 1.54299 1.51336 1.20209 1.34886 1.20224 1.37715 0.94078 0.84827 0.86300 1.25938 0.96572 0.96631 0.99034 1.69909 1.34885 1.16770 1.23068 0.85826 0.79351 0.80263 0.79473 1.18114 1.20013 1.19820 1.16613 0.76189 0.75652 0.78263 1.93345 1.83430 1.32719 1.87144 1.93317 1.78123 1.70939 1.56262 1.30252 1.29869 1.08910 1.00635 1.23800 0.98063 0.85604 0.98296 1.22403 1.05466 1.03044 0.96007 1.23552 1.00815 0.90380 0.99800 1.20127 0.99939 1.03000 0.89836 1.73786 1.14835 1.23159 0.96387 1.84829 1.48599 1.31787 1.31601 0.93347 0.93486 0.92171 0.87874 0.91981 0.90916 0.84669 0.84607 0.81000 0.90397 0.90699 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.96 37.16 0.37 -2.36 16 2 C 0.11 2.17 5.78 -4.04 -0.02 2.15 16 3 N -0.79 -17.70 2.91 -59.91 -0.17 -17.87 16 4 C -0.21 -4.95 8.63 -15.06 -0.13 -5.08 16 5 H 0.12 2.81 7.25 -52.49 -0.38 2.43 16 6 C 0.03 0.74 4.62 -17.43 -0.08 0.66 16 7 N -0.81 -17.49 11.09 55.49 0.62 -16.87 16 8 Si 0.93 17.00 29.61 -169.99 -5.03 11.97 16 9 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 10 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 11 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 12 S 2.43 56.16 5.35 -107.50 -0.57 55.58 16 13 O -0.98 -25.66 16.82 -57.54 -0.97 -26.63 16 14 O -1.00 -24.47 16.65 -57.54 -0.96 -25.42 16 15 C -0.58 -11.49 6.74 36.01 0.24 -11.24 16 16 C 0.01 0.14 6.75 -35.30 -0.24 -0.10 16 17 C -0.25 -4.41 11.06 -39.38 -0.44 -4.84 16 18 C 0.01 0.23 7.33 -82.10 -0.60 -0.37 16 19 C -0.07 -0.85 10.47 36.01 0.38 -0.47 16 20 N -0.37 -7.38 12.07 33.42 0.40 -6.98 16 21 O 0.10 2.01 11.20 17.19 0.19 2.20 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 1.15 7.41 -51.92 -0.38 0.76 16 25 H 0.10 2.15 5.55 -51.93 -0.29 1.86 16 26 H 0.06 1.21 7.01 -51.93 -0.36 0.84 16 27 H 0.28 5.61 8.31 -40.82 -0.34 5.27 16 28 H 0.14 2.35 8.14 -51.93 -0.42 1.93 16 29 H 0.14 2.59 8.14 -51.92 -0.42 2.17 16 30 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -28.88 298.94 -6.45 -35.33 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.94 Total: 5.85 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -0.52 Total: -21.66 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.84 Total: -41.73 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -1.73 Total: -49.85 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.57 Total: 55.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.88 -6.45 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331103124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.157 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds