Wall clock time and date at job start Mon Mar 30 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47153 * 2 1 4 4 C 1.36942 * 120.00218 * 293.77077 * 3 2 1 5 5 H 1.07998 * 119.99584 * 149.37942 * 4 3 2 6 6 C 1.38815 * 119.99872 * 329.37946 * 4 3 2 7 7 N 1.31614 * 119.99719 * 336.91552 * 6 4 3 8 8 Si 1.86795 * 119.99734 * 156.90957 * 6 4 3 9 9 H 1.48501 * 109.47267 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46721 * 120.00251 * 8 6 4 11 11 H 1.48489 * 109.47307 * 240.00076 * 8 6 4 12 12 S 1.65602 * 119.99786 * 113.49376 * 3 2 1 13 13 O 1.42105 * 104.27761 * 206.07271 * 12 3 2 14 14 O 1.42100 * 104.27980 * 333.92976 * 12 3 2 15 15 C 1.81403 * 104.44916 * 90.00217 * 12 3 2 16 16 C 1.50703 * 109.47096 * 179.97438 * 15 12 3 17 17 C 1.35448 * 126.77326 * 89.99783 * 16 15 12 18 18 C 1.41377 * 103.98255 * 179.97438 * 17 16 15 19 19 C 1.50701 * 126.80362 * 180.02562 * 18 17 16 20 20 N 1.30172 * 106.39821 * 0.02562 * 18 17 16 21 21 O 1.20924 * 111.60273 * 359.72824 * 20 18 17 22 22 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47202 * 300.00234 * 1 2 3 24 24 H 1.09009 * 109.46956 * 59.99919 * 1 2 3 25 25 H 1.09001 * 109.47089 * 240.00298 * 2 1 3 26 26 H 1.08996 * 109.46895 * 120.00448 * 2 1 3 27 27 H 0.97001 * 119.99735 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.46823 * 299.99822 * 15 12 3 29 29 H 1.09001 * 109.47221 * 59.99822 * 15 12 3 30 30 H 1.08002 * 128.01318 * 359.97438 * 17 16 15 31 31 H 1.08997 * 109.47424 * 89.99663 * 19 18 17 32 32 H 1.09004 * 109.47473 * 210.00013 * 19 18 17 33 33 H 1.09009 * 109.46966 * 329.99632 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7959 2.1861 -1.0853 5 1 1.6825 3.2519 -0.9529 6 6 1.7163 1.6321 -2.3556 7 7 2.2813 0.4694 -2.6030 8 14 0.8071 2.5367 -3.7137 9 1 0.2660 3.8133 -3.1820 10 1 1.7433 2.8232 -4.8303 11 1 -0.3101 1.6930 -4.2086 12 16 2.8334 1.9712 1.3153 13 8 2.6072 3.3733 1.2677 14 8 2.3579 1.1889 2.4021 15 6 4.5750 1.5955 0.9745 16 6 5.4280 2.0906 2.1140 17 6 5.7778 1.3993 3.2250 18 6 6.5711 2.3107 3.9589 19 6 7.2306 2.0642 5.2913 20 7 6.6191 3.4052 3.2558 21 8 5.9944 3.3003 2.2257 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2253 0.0821 -3.4906 28 1 4.7001 0.5180 0.8680 29 1 4.8795 2.0896 0.0518 30 1 5.5121 0.3863 3.4891 31 1 8.2302 1.6595 5.1326 32 1 7.3017 3.0029 5.8408 33 1 6.6370 1.3518 5.8643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331103124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:31 Heat of formation + Delta-G solvation = -29.405221 kcal Electronic energy + Delta-G solvation = -19741.732654 eV Core-core repulsion = 16511.647109 eV Total energy + Delta-G solvation = -3230.085545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.00228 -38.01953 -37.56577 -36.36652 -35.86490 -34.48734 -33.78173 -31.01591 -29.63805 -28.93523 -26.82088 -24.17665 -23.32684 -21.42188 -20.24376 -19.08821 -18.66985 -18.42072 -18.20379 -16.89476 -16.67995 -16.33022 -15.64377 -15.38297 -14.80089 -14.63035 -14.24178 -14.07833 -14.06622 -13.77058 -13.63317 -13.39419 -13.10978 -12.71931 -12.64522 -12.57894 -12.55114 -12.18830 -12.17148 -12.04662 -11.89021 -11.53546 -11.20862 -11.09985 -10.35245 -9.73728 -8.47758 -6.02592 -0.42413 0.41690 1.14950 1.51458 1.56771 1.68431 1.87261 2.20759 2.51125 2.78641 3.17363 3.25045 3.43913 3.66845 3.95945 4.06776 4.29573 4.40517 4.50800 4.63133 4.65943 4.71919 4.77793 4.82098 4.88352 5.02298 5.19073 5.27336 5.30228 5.62316 5.71756 6.36992 6.65527 7.08405 7.19275 8.39578 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.005711 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.775552 B = 4901.647653 C = 5272.611092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.100 3.900 3 N -0.789 5.789 4 C -0.231 4.231 5 H 0.104 0.896 6 C 0.014 3.986 7 N -0.814 5.814 8 Si 0.983 3.017 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.262 1.262 12 S 2.423 3.577 13 O -1.020 7.020 14 O -1.018 7.018 15 C -0.574 4.574 16 C -0.022 4.022 17 C -0.245 4.245 18 C 0.022 3.978 19 C -0.073 4.073 20 N -0.399 5.399 21 O 0.062 5.938 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.291 0.709 28 H 0.157 0.843 29 H 0.135 0.865 30 H 0.200 0.800 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 -4.775 2.497 6.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 N -0.610 5.610 4 C -0.386 4.386 5 H 0.122 0.878 6 C -0.202 4.202 7 N -0.451 5.451 8 Si 0.805 3.195 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.186 1.186 12 S 2.527 3.473 13 O -1.009 7.009 14 O -1.008 7.008 15 C -0.690 4.690 16 C -0.086 4.086 17 C -0.267 4.267 18 C -0.137 4.137 19 C -0.130 4.130 20 N -0.111 5.111 21 O 0.003 5.997 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.153 0.847 30 H 0.217 0.783 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.673 -3.359 3.636 6.164 hybrid contribution 0.152 -0.464 -0.921 1.042 sum 3.825 -3.823 2.715 6.051 Atomic orbital electron populations 1.21881 0.95368 1.01845 1.01129 1.21693 0.95405 0.81978 1.03405 1.54363 1.50890 1.20953 1.34770 1.20308 1.38510 0.93929 0.85871 0.87824 1.26543 0.96496 0.97164 1.00006 1.69912 1.34108 1.16907 1.24162 0.85001 0.78520 0.79046 0.76958 1.18860 1.19386 1.18611 1.17320 0.77032 0.74578 0.78344 1.93267 1.84703 1.35304 1.87672 1.93255 1.79194 1.70817 1.57513 1.30041 1.28004 1.10249 1.00696 1.24055 0.99105 0.86041 0.99387 1.22907 1.04537 1.04150 0.95059 1.24423 0.99346 0.89020 1.00941 1.20411 1.01143 1.04274 0.87140 1.73784 1.15955 1.24683 0.96717 1.84791 1.49726 1.32505 1.32641 0.90202 0.94407 0.92791 0.88013 0.91264 0.89774 0.82484 0.84706 0.78329 0.87910 0.89933 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.96 71.98 0.72 -4.47 16 2 C 0.10 4.04 5.78 86.38 0.50 4.54 16 3 N -0.79 -35.76 2.91 -343.45 -1.00 -36.76 16 4 C -0.23 -10.69 8.63 84.03 0.72 -9.97 16 5 H 0.10 5.05 7.25 -2.91 -0.02 5.03 16 6 C 0.01 0.58 4.62 84.86 0.39 0.97 16 7 N -0.81 -33.83 11.09 21.65 0.24 -33.59 16 8 Si 0.98 33.54 29.61 68.60 2.03 35.57 16 9 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 10 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 11 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 12 S 2.42 114.35 5.35 -56.49 -0.30 114.04 16 13 O -1.02 -55.85 16.82 -127.65 -2.15 -57.99 16 14 O -1.02 -50.55 16.65 -127.65 -2.13 -52.68 16 15 C -0.57 -22.82 6.74 71.24 0.48 -22.34 16 16 C -0.02 -0.88 6.75 25.04 0.17 -0.71 16 17 C -0.24 -8.44 11.06 22.40 0.25 -8.19 16 18 C 0.02 0.72 7.33 43.58 0.32 1.04 16 19 C -0.07 -1.50 10.47 71.24 0.75 -0.75 16 20 N -0.40 -15.79 12.07 -49.57 -0.60 -16.39 16 21 O 0.06 2.69 11.20 71.68 0.80 3.49 16 22 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.99 7.41 -2.38 -0.02 1.97 16 25 H 0.10 4.11 5.55 -2.39 -0.01 4.09 16 26 H 0.07 2.64 7.01 -2.39 -0.02 2.63 16 27 H 0.29 10.98 8.31 -92.71 -0.77 10.21 16 28 H 0.16 5.37 8.14 -2.39 -0.02 5.35 16 29 H 0.13 5.29 8.14 -2.39 -0.02 5.27 16 30 H 0.20 5.54 8.06 -2.91 -0.02 5.51 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -62.39 298.94 2.32 -60.07 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.12 Total: 24.10 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 4.29 Total: -39.87 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -1.36 Total: -86.74 kcal Atomic # 8 Polarization: -103.71 SS G_CDS: -3.47 Total: -107.18 kcal Atomic # 14 Polarization: 33.54 SS G_CDS: 2.03 Total: 35.57 kcal Atomic # 16 Polarization: 114.35 SS G_CDS: -0.30 Total: 114.04 kcal Total: -62.39 2.32 -60.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331103124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.668 kcal (2) G-P(sol) polarization free energy of solvation -62.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds