Wall clock time and date at job start Mon Mar 30 2020 01:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41376 * 126.80382 * 2 1 4 4 C 1.35455 * 103.98594 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77862 * 179.97438 * 4 3 2 6 6 S 1.81394 * 109.47387 * 89.99802 * 5 4 3 7 7 O 1.42109 * 110.53807 * 68.37830 * 6 5 4 8 8 O 1.42098 * 110.54422 * 291.62859 * 6 5 4 9 9 N 1.65602 * 104.44973 * 179.97438 * 6 5 4 10 10 C 1.46498 * 119.99612 * 65.28269 * 9 6 5 11 11 H 1.09003 * 109.47598 * 24.72206 * 10 9 6 12 12 C 1.52998 * 109.47034 * 264.71801 * 10 9 6 13 13 C 1.50702 * 109.47204 * 144.72385 * 10 9 6 14 14 H 1.08004 * 119.99934 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00104 * 179.97438 * 13 10 9 16 16 N 1.31522 * 120.00125 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00200 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47126 * 59.99950 * 17 15 13 19 19 H 1.48499 * 109.47626 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47390 * 300.00088 * 17 15 13 21 21 O 1.34045 * 106.44502 * 0.24022 * 4 3 2 22 22 N 1.20921 * 111.56343 * 359.56704 * 21 4 3 23 23 H 1.09003 * 109.47182 * 90.00124 * 1 2 3 24 24 H 1.08997 * 109.47633 * 210.00355 * 1 2 3 25 25 H 1.09004 * 109.47309 * 330.00339 * 1 2 3 26 26 H 1.07998 * 128.00711 * 0.03417 * 3 2 1 27 27 H 1.09009 * 109.46735 * 329.99972 * 5 4 3 28 28 H 1.09001 * 109.47233 * 210.00796 * 5 4 3 29 29 H 0.97001 * 119.99942 * 244.99793 * 9 6 5 30 30 H 1.08994 * 109.47476 * 300.00620 * 12 10 9 31 31 H 1.09003 * 109.46713 * 60.00111 * 12 10 9 32 32 H 1.08999 * 109.47174 * 179.97438 * 12 10 9 33 33 H 0.96995 * 120.00356 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3693 -0.0014 6 16 5.4247 1.6757 1.7085 7 8 5.7957 0.4589 2.3420 8 8 4.5436 2.5927 2.3424 9 7 6.8478 2.5099 1.5626 10 6 6.8540 3.8495 0.9695 11 1 5.8704 4.3040 1.0881 12 6 7.1922 3.7466 -0.5191 13 6 7.8873 4.7005 1.6617 14 1 8.4799 4.2852 2.4635 15 6 8.0763 6.0092 1.2714 16 7 7.3544 6.5152 0.2954 17 14 9.3566 7.0643 2.1298 18 1 10.6968 6.4450 1.9693 19 1 9.3631 8.4222 1.5286 20 1 9.0276 7.1647 3.5744 21 8 3.4537 -0.7255 -0.0063 22 7 2.2868 -1.0423 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 2.0710 2.1742 0.0005 27 1 4.7648 2.3208 -0.5153 28 1 5.6657 0.7856 -0.5157 29 1 7.6765 2.1133 1.8735 30 1 8.1757 3.2921 -0.6377 31 1 6.4448 3.1311 -1.0197 32 1 7.1964 4.7433 -0.9604 33 1 7.4876 7.4358 0.0205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331147566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:50 Heat of formation + Delta-G solvation = -16.418023 kcal Electronic energy + Delta-G solvation = -19331.664706 eV Core-core repulsion = 16102.142328 eV Total energy + Delta-G solvation = -3229.522378 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.04866 -36.74599 -35.66201 -35.50212 -34.94073 -33.70496 -32.28189 -28.83700 -28.52742 -28.18036 -25.32821 -23.22778 -21.14047 -20.51547 -18.96510 -18.00110 -17.56388 -17.29019 -16.40384 -15.75029 -15.57242 -14.86499 -14.71315 -14.08228 -13.70329 -13.54355 -13.21303 -13.02597 -12.74419 -12.59017 -12.29301 -11.88514 -11.71651 -11.61752 -11.31267 -11.28896 -11.18700 -11.02395 -10.71972 -10.46505 -10.16532 -10.13562 -9.44397 -9.28862 -8.70956 -8.39637 -6.20645 -4.27549 0.42255 1.39749 2.09385 2.74152 3.24584 3.29201 3.29436 3.36690 3.98602 4.04060 4.26665 4.31069 4.49041 4.81700 4.95390 5.11230 5.14670 5.28421 5.32893 5.39663 5.60730 5.65638 5.96822 6.16741 6.56904 6.63414 6.83689 7.43921 7.55276 7.75804 7.89667 8.10025 8.15944 8.74781 9.38896 10.85783 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.036416 B = 0.004607 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.711947 B = 6076.525874 C = 6325.057151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.015 3.985 3 C -0.211 4.211 4 C -0.026 4.026 5 C -0.562 4.562 6 S 2.612 3.388 7 O -0.966 6.966 8 O -0.943 6.943 9 N -1.095 6.095 10 C 0.261 3.739 11 H 0.054 0.946 12 C -0.165 4.165 13 C -0.521 4.521 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 O 0.107 5.893 22 N -0.360 5.360 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.182 0.818 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.412 0.588 30 H 0.039 0.961 31 H 0.011 0.989 32 H 0.097 0.903 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -8.362 -3.845 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 C -0.234 4.234 4 C -0.090 4.090 5 C -0.686 4.686 6 S 2.699 3.301 7 O -0.956 6.956 8 O -0.932 6.932 9 N -0.857 5.857 10 C 0.157 3.843 11 H 0.071 0.929 12 C -0.225 4.225 13 C -0.561 4.561 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O 0.039 5.961 22 N -0.065 5.065 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.200 0.800 27 H 0.184 0.816 28 H 0.173 0.827 29 H 0.246 0.754 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.116 0.884 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.996 -9.674 -3.246 13.603 hybrid contribution 1.160 1.415 -0.400 1.873 sum -7.836 -8.259 -3.646 11.954 Atomic orbital electron populations 1.20193 0.85531 1.04093 1.03467 1.23647 0.99275 0.88585 1.02802 1.22640 0.90688 1.01953 1.08091 1.23202 0.96277 0.84144 1.05405 1.29744 0.99532 1.07934 1.31374 1.05037 0.75037 0.73936 0.76103 1.93566 1.82315 1.47619 1.72095 1.93610 1.66785 1.62809 1.70038 1.55602 1.24137 1.28643 1.77283 1.18717 0.99281 0.76541 0.89780 0.92877 1.22428 0.98348 1.03252 0.98431 1.21148 1.20257 0.96097 1.18558 0.91651 1.24907 0.96289 0.97629 0.95019 1.69827 1.39855 1.15319 1.27807 0.86473 0.81451 0.79144 0.79867 1.20137 1.21156 1.20051 1.84859 1.21700 1.22047 1.67481 1.73837 0.89189 1.24048 1.19411 0.90039 0.90416 0.89628 0.80021 0.81645 0.82717 0.75384 0.94182 0.97044 0.88421 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.47 36.00 0.38 -0.28 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 C -0.21 -2.81 11.06 -39.38 -0.44 -3.25 16 4 C -0.03 -0.37 6.75 -35.30 -0.24 -0.61 16 5 C -0.56 -7.60 5.82 36.00 0.21 -7.39 16 6 S 2.61 45.66 5.42 -107.50 -0.58 45.07 16 7 O -0.97 -18.69 18.08 -57.54 -1.04 -19.73 16 8 O -0.94 -19.62 17.38 -57.54 -1.00 -20.62 16 9 N -1.09 -20.41 5.35 -5.88 -0.03 -20.44 16 10 C 0.26 5.80 2.80 -69.08 -0.19 5.60 16 11 H 0.05 1.28 7.47 -51.93 -0.39 0.89 16 12 C -0.17 -3.33 9.26 37.16 0.34 -2.99 16 13 C -0.52 -13.13 8.76 -34.44 -0.30 -13.43 16 14 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -23.26 11.32 55.43 0.63 -22.64 16 17 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 O 0.11 1.67 11.20 17.16 0.19 1.86 16 22 N -0.36 -5.51 12.07 33.42 0.40 -5.11 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 27 H 0.17 2.02 6.79 -51.92 -0.35 1.66 16 28 H 0.15 1.69 8.14 -51.92 -0.42 1.26 16 29 H 0.41 7.06 8.79 -34.47 -0.30 6.76 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.01 0.18 5.82 -51.93 -0.30 -0.13 16 32 H 0.10 2.23 6.07 -51.93 -0.32 1.91 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 299.06 15.07 4.51 4.51 Total: -1.00 -31.55 299.06 -6.62 -38.18 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.74 Total: 5.07 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -0.93 Total: -21.19 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 1.00 Total: -48.18 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.85 Total: -38.49 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 45.66 SS G_CDS: -0.58 Total: 45.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.55 -6.62 -38.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331147566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.757 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds