Wall clock time and date at job start Mon Mar 30 2020 01:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41376 * 126.80382 * 2 1 4 4 C 1.35455 * 103.98594 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77862 * 179.97438 * 4 3 2 6 6 S 1.81394 * 109.47387 * 89.99802 * 5 4 3 7 7 O 1.42109 * 110.53807 * 68.37830 * 6 5 4 8 8 O 1.42098 * 110.54422 * 291.62859 * 6 5 4 9 9 N 1.65602 * 104.44973 * 179.97438 * 6 5 4 10 10 C 1.46498 * 119.99612 * 65.28269 * 9 6 5 11 11 H 1.09003 * 109.47598 * 24.72206 * 10 9 6 12 12 C 1.52998 * 109.47034 * 264.71801 * 10 9 6 13 13 C 1.50702 * 109.47204 * 144.72385 * 10 9 6 14 14 H 1.08004 * 119.99934 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00104 * 179.97438 * 13 10 9 16 16 N 1.31522 * 120.00125 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00200 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47126 * 59.99950 * 17 15 13 19 19 H 1.48499 * 109.47626 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47390 * 300.00088 * 17 15 13 21 21 O 1.34045 * 106.44502 * 0.24022 * 4 3 2 22 22 N 1.20921 * 111.56343 * 359.56704 * 21 4 3 23 23 H 1.09003 * 109.47182 * 90.00124 * 1 2 3 24 24 H 1.08997 * 109.47633 * 210.00355 * 1 2 3 25 25 H 1.09004 * 109.47309 * 330.00339 * 1 2 3 26 26 H 1.07998 * 128.00711 * 0.03417 * 3 2 1 27 27 H 1.09009 * 109.46735 * 329.99972 * 5 4 3 28 28 H 1.09001 * 109.47233 * 210.00796 * 5 4 3 29 29 H 0.97001 * 119.99942 * 244.99793 * 9 6 5 30 30 H 1.08994 * 109.47476 * 300.00620 * 12 10 9 31 31 H 1.09003 * 109.46713 * 60.00111 * 12 10 9 32 32 H 1.08999 * 109.47174 * 179.97438 * 12 10 9 33 33 H 0.96995 * 120.00356 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3693 -0.0014 6 16 5.4247 1.6757 1.7085 7 8 5.7957 0.4589 2.3420 8 8 4.5436 2.5927 2.3424 9 7 6.8478 2.5099 1.5626 10 6 6.8540 3.8495 0.9695 11 1 5.8704 4.3040 1.0881 12 6 7.1922 3.7466 -0.5191 13 6 7.8873 4.7005 1.6617 14 1 8.4799 4.2852 2.4635 15 6 8.0763 6.0092 1.2714 16 7 7.3544 6.5152 0.2954 17 14 9.3566 7.0643 2.1298 18 1 10.6968 6.4450 1.9693 19 1 9.3631 8.4222 1.5286 20 1 9.0276 7.1647 3.5744 21 8 3.4537 -0.7255 -0.0063 22 7 2.2868 -1.0423 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 2.0710 2.1742 0.0005 27 1 4.7648 2.3208 -0.5153 28 1 5.6657 0.7856 -0.5157 29 1 7.6765 2.1133 1.8735 30 1 8.1757 3.2921 -0.6377 31 1 6.4448 3.1311 -1.0197 32 1 7.1964 4.7433 -0.9604 33 1 7.4876 7.4358 0.0205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331147566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:49 Heat of formation + Delta-G solvation = -40.044778 kcal Electronic energy + Delta-G solvation = -19332.689239 eV Core-core repulsion = 16102.142328 eV Total energy + Delta-G solvation = -3230.546911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.11217 -38.25556 -37.29268 -37.03998 -35.93215 -34.80348 -34.10763 -30.10438 -29.67176 -29.35563 -27.16860 -24.27837 -22.81549 -21.62735 -20.35925 -19.33798 -18.89884 -18.49918 -17.97157 -17.24085 -17.07778 -16.51127 -15.80801 -15.41920 -15.11164 -14.51065 -14.22449 -14.13100 -13.99565 -13.85954 -13.55109 -13.49870 -13.24279 -13.14483 -12.94032 -12.77446 -12.60976 -12.41603 -12.23119 -12.16246 -11.96009 -11.11020 -11.08913 -10.65641 -10.46475 -10.02773 -8.12480 -6.24640 -0.94740 0.29463 1.09452 1.47973 1.49354 1.55484 1.59913 1.97191 2.46767 2.72193 3.07923 3.14533 3.18311 3.29586 3.79831 3.81740 4.09143 4.40264 4.42763 4.53975 4.68727 4.79657 4.82882 4.96866 5.03155 5.18832 5.19435 5.62623 5.83090 6.10004 6.15891 6.43721 6.84341 7.03485 7.44387 8.92291 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.036416 B = 0.004607 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.711947 B = 6076.525874 C = 6325.057151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 C -0.211 4.211 4 C -0.046 4.046 5 C -0.537 4.537 6 S 2.618 3.382 7 O -0.989 6.989 8 O -0.984 6.984 9 N -1.097 6.097 10 C 0.263 3.737 11 H 0.031 0.969 12 C -0.159 4.159 13 C -0.543 4.543 14 H 0.061 0.939 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.279 1.279 21 O 0.088 5.912 22 N -0.385 5.385 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.205 0.795 27 H 0.186 0.814 28 H 0.188 0.812 29 H 0.417 0.583 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 -8.607 -4.833 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C -0.233 4.233 4 C -0.110 4.110 5 C -0.666 4.666 6 S 2.711 3.289 7 O -0.979 6.979 8 O -0.974 6.974 9 N -0.858 5.858 10 C 0.157 3.843 11 H 0.048 0.952 12 C -0.218 4.218 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.204 1.204 21 O 0.023 5.977 22 N -0.092 5.092 23 H 0.119 0.881 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.222 0.778 27 H 0.203 0.797 28 H 0.205 0.795 29 H 0.252 0.748 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.539 -9.914 -4.180 14.379 hybrid contribution 1.225 1.425 -0.117 1.883 sum -8.314 -8.489 -4.297 12.636 Atomic orbital electron populations 1.20426 0.82631 1.05300 1.05100 1.24362 1.01117 0.87865 1.00839 1.23108 0.90366 1.03179 1.06675 1.23396 0.96921 0.84183 1.06532 1.29429 1.00383 1.09557 1.27199 1.04560 0.74035 0.72823 0.77442 1.93536 1.82536 1.47894 1.73947 1.93557 1.67391 1.63824 1.72604 1.55376 1.24809 1.27832 1.77736 1.18490 0.97208 0.77492 0.91080 0.95154 1.22274 1.00003 1.02621 0.96897 1.21556 1.20952 0.97019 1.18768 0.92107 1.25567 0.97928 0.98735 0.95679 1.69929 1.40838 1.15464 1.28625 0.85647 0.79746 0.77859 0.78578 1.19436 1.20836 1.20432 1.84830 1.22074 1.22510 1.68282 1.73838 0.89406 1.25187 1.20818 0.88060 0.89939 0.87715 0.77836 0.79696 0.79490 0.74773 0.93709 0.92939 0.91009 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.47 71.24 0.75 -0.39 16 2 C 0.02 0.40 7.33 43.58 0.32 0.72 16 3 C -0.21 -5.13 11.06 22.40 0.25 -4.89 16 4 C -0.05 -1.24 6.75 25.04 0.17 -1.07 16 5 C -0.54 -13.17 5.82 71.24 0.41 -12.75 16 6 S 2.62 89.63 5.42 -56.49 -0.31 89.33 16 7 O -0.99 -37.93 18.08 -127.65 -2.31 -40.23 16 8 O -0.98 -41.04 17.38 -127.65 -2.22 -43.26 16 9 N -1.10 -40.21 5.35 -172.52 -0.92 -41.14 16 10 C 0.26 11.55 2.80 44.25 0.12 11.67 16 11 H 0.03 1.48 7.47 -2.39 -0.02 1.46 16 12 C -0.16 -6.15 9.26 71.98 0.67 -5.48 16 13 C -0.54 -27.43 8.76 25.60 0.22 -27.20 16 14 H 0.06 3.03 7.81 -2.91 -0.02 3.00 16 15 C 0.02 1.10 5.30 84.65 0.45 1.55 16 16 N -0.91 -47.57 11.32 21.45 0.24 -47.33 16 17 Si 0.96 40.96 29.54 68.60 2.03 42.99 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 O 0.09 2.63 11.20 71.59 0.80 3.44 16 22 N -0.38 -11.29 12.07 -49.55 -0.60 -11.89 16 23 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 27 H 0.19 3.88 6.79 -2.39 -0.02 3.86 16 28 H 0.19 3.40 8.14 -2.39 -0.02 3.38 16 29 H 0.42 14.15 8.79 -96.74 -0.85 13.30 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.54 5.82 -2.39 -0.01 1.53 16 32 H 0.07 3.21 6.07 -2.39 -0.01 3.19 16 33 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -68.13 299.06 0.37 -67.76 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.29 Total: 18.18 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.36 Total: -37.84 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -1.28 Total: -100.36 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -3.73 Total: -80.06 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 89.63 SS G_CDS: -0.31 Total: 89.33 kcal Total: -68.13 0.37 -67.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331147566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.714 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds