Wall clock time and date at job start Mon Mar 30 2020 01:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99997 * 2 1 4 4 C 1.50702 * 109.47286 * 274.99769 * 3 2 1 5 5 C 1.41379 * 126.80093 * 94.70665 * 4 3 2 6 6 C 1.35446 * 103.98652 * 180.26598 * 5 4 3 7 7 O 1.34044 * 106.44743 * 0.02562 * 6 5 4 8 8 N 1.20918 * 111.56370 * 359.97438 * 7 6 5 9 9 S 1.65593 * 120.00041 * 179.97438 * 2 1 3 10 10 O 1.42099 * 104.27656 * 26.06912 * 9 2 1 11 11 O 1.42101 * 104.27866 * 153.92789 * 9 2 1 12 12 C 1.81406 * 104.45006 * 270.00208 * 9 2 1 13 13 C 1.52998 * 109.47030 * 179.97438 * 12 9 2 14 14 C 1.50701 * 109.46853 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99479 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00358 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99665 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47214 * 60.00090 * 18 16 14 20 20 H 1.48495 * 109.47230 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47006 * 300.00340 * 18 16 14 22 22 H 1.09003 * 109.46947 * 90.00024 * 1 2 3 23 23 H 1.08991 * 109.47232 * 210.00135 * 1 2 3 24 24 H 1.08998 * 109.47090 * 330.00369 * 1 2 3 25 25 H 1.08995 * 109.47451 * 154.99733 * 3 2 1 26 26 H 1.09006 * 109.47128 * 34.99840 * 3 2 1 27 27 H 1.08001 * 128.00721 * 0.25149 * 5 4 3 28 28 H 1.08004 * 126.77907 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.46672 * 299.99956 * 12 9 2 30 30 H 1.08997 * 109.46825 * 59.99943 * 12 9 2 31 31 H 1.08996 * 109.47461 * 300.00467 * 13 12 9 32 32 H 1.09006 * 109.47212 * 60.00245 * 13 12 9 33 33 H 0.97003 * 119.99750 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 6 1.4952 2.6814 -2.0817 6 6 2.0412 2.7932 -3.3162 7 8 3.1160 1.9924 -3.3297 8 7 3.2662 1.4321 -2.2688 9 16 2.2930 -1.4341 0.0006 10 8 1.3970 -2.3563 -0.6041 11 8 3.5395 -1.1194 -0.6047 12 6 2.5193 -1.8253 1.7575 13 6 3.2808 -3.1455 1.8920 14 6 3.4693 -3.4702 3.3515 15 1 3.0841 -2.8020 4.1075 16 6 4.1336 -4.6204 3.7215 17 7 4.6031 -5.4338 2.8009 18 14 4.3667 -5.0233 5.5306 19 1 3.0394 -5.1493 6.1847 20 1 5.1059 -6.3045 5.6612 21 1 5.1394 -3.9365 6.1842 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.1857 1.1177 0.4343 26 1 1.6501 2.0043 0.5895 27 1 0.6166 3.1769 -1.6958 28 1 1.6811 3.4060 -4.1295 29 1 3.0866 -1.0278 2.2371 30 1 1.5451 -1.9177 2.2375 31 1 2.7132 -3.9429 1.4123 32 1 4.2551 -3.0536 1.4118 33 1 5.0701 -6.2431 3.0614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352478936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:07 Heat of formation + Delta-G solvation = -7.719231 kcal Electronic energy + Delta-G solvation = -19250.241668 eV Core-core repulsion = 16021.096498 eV Total energy + Delta-G solvation = -3229.145170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.96602 -36.87718 -36.57078 -35.35212 -33.88370 -33.68082 -31.70167 -31.15428 -28.32154 -25.68312 -25.05352 -23.20986 -21.61075 -21.20540 -18.65706 -17.87127 -17.63220 -17.27884 -16.49604 -16.09930 -15.67541 -15.03017 -14.56791 -14.52790 -14.03033 -13.60051 -13.34790 -12.91676 -12.75844 -12.49402 -12.28038 -11.75186 -11.53442 -11.48827 -11.34683 -11.07942 -11.06027 -10.95706 -10.42576 -10.37321 -10.26629 -9.78693 -9.71198 -9.41841 -8.91265 -8.49623 -6.11566 -4.17599 0.72188 1.48577 2.12631 3.09712 3.22815 3.27524 3.32313 3.34132 4.08292 4.31784 4.36785 4.44831 4.60622 4.78434 5.04270 5.16385 5.23279 5.25901 5.39578 5.47176 5.51801 5.64166 5.67109 5.75639 5.88778 5.96440 6.48438 6.54168 7.30569 7.36679 7.80749 8.17827 8.29403 8.85508 9.47067 10.99424 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.004239 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.983978 B = 6604.013651 C = 6731.340967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.005 6.005 3 C 0.205 3.795 4 C -0.013 4.013 5 C -0.224 4.224 6 C -0.073 4.073 7 O 0.105 5.895 8 N -0.326 5.326 9 S 2.582 3.418 10 O -0.963 6.963 11 O -0.946 6.946 12 C -0.588 4.588 13 C 0.028 3.972 14 C -0.522 4.522 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.170 0.830 28 H 0.214 0.786 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 18.451 -7.340 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.841 5.841 3 C 0.078 3.922 4 C -0.174 4.174 5 C -0.246 4.246 6 C -0.154 4.154 7 O 0.034 5.966 8 N -0.026 5.026 9 S 2.680 3.320 10 O -0.953 6.953 11 O -0.936 6.936 12 C -0.722 4.722 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.187 0.813 28 H 0.230 0.770 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.904 17.008 -8.101 20.430 hybrid contribution -0.864 0.479 1.681 1.950 sum -8.768 17.487 -6.420 20.588 Atomic orbital electron populations 1.21425 0.78596 1.02927 1.01966 1.57881 1.15132 1.20957 1.90166 1.19411 0.98307 0.86053 0.88431 1.24160 0.93902 0.99247 1.00056 1.22705 1.03780 1.03601 0.94555 1.26023 0.90513 0.98422 1.00435 1.84929 1.39103 1.43234 1.29365 1.74136 1.21744 1.14223 0.92483 1.06137 0.73937 0.72582 0.79389 1.93536 1.65015 1.61720 1.75053 1.93606 1.43200 1.82264 1.74566 1.30488 1.10169 1.10697 1.20818 1.18961 0.95018 0.87112 0.99989 1.20964 1.37294 1.07113 0.90752 0.92085 1.25071 0.95267 0.96079 0.98037 1.69946 1.37150 1.12658 1.33039 0.86522 0.78376 0.77763 0.84561 1.20080 1.21047 1.20060 0.92915 0.90695 0.91184 0.88117 0.88116 0.81265 0.76989 0.86259 0.86332 0.94908 0.94783 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.24 59.85 0.61 1.65 16 2 N -1.01 -13.93 3.10 -123.05 -0.38 -14.31 16 3 C 0.20 2.45 5.87 -5.19 -0.03 2.42 16 4 C -0.01 -0.17 6.91 -82.10 -0.57 -0.73 16 5 C -0.22 -2.08 11.12 -39.38 -0.44 -2.52 16 6 C -0.07 -0.62 12.30 29.74 0.37 -0.26 16 7 O 0.10 1.37 11.20 17.17 0.19 1.56 16 8 N -0.33 -5.26 12.01 33.42 0.40 -4.85 16 9 S 2.58 48.93 5.32 -107.50 -0.57 48.35 16 10 O -0.96 -20.96 17.09 -57.54 -0.98 -21.94 16 11 O -0.95 -20.75 16.93 -57.54 -0.97 -21.73 16 12 C -0.59 -11.46 6.12 37.16 0.23 -11.23 16 13 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 24 H 0.07 0.51 7.94 -51.93 -0.41 0.09 16 25 H 0.10 1.26 7.61 -51.93 -0.40 0.86 16 26 H 0.10 0.77 7.96 -51.93 -0.41 0.36 16 27 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.21 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 30 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -37.72 306.07 -6.50 -44.21 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.13 Total: -2.76 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -0.38 Total: -23.39 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.76 Total: -45.20 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.77 Total: -42.11 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 48.93 SS G_CDS: -0.57 Total: 48.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.72 -6.50 -44.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352478936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.495 kcal (2) G-P(sol) polarization free energy of solvation -37.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds