Wall clock time and date at job start Mon Mar 30 2020 01:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99997 * 2 1 4 4 C 1.50702 * 109.47286 * 274.99769 * 3 2 1 5 5 C 1.41379 * 126.80093 * 94.70665 * 4 3 2 6 6 C 1.35446 * 103.98652 * 180.26598 * 5 4 3 7 7 O 1.34044 * 106.44743 * 0.02562 * 6 5 4 8 8 N 1.20918 * 111.56370 * 359.97438 * 7 6 5 9 9 S 1.65593 * 120.00041 * 179.97438 * 2 1 3 10 10 O 1.42099 * 104.27656 * 26.06912 * 9 2 1 11 11 O 1.42101 * 104.27866 * 153.92789 * 9 2 1 12 12 C 1.81406 * 104.45006 * 270.00208 * 9 2 1 13 13 C 1.52998 * 109.47030 * 179.97438 * 12 9 2 14 14 C 1.50701 * 109.46853 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99479 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00358 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99665 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47214 * 60.00090 * 18 16 14 20 20 H 1.48495 * 109.47230 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47006 * 300.00340 * 18 16 14 22 22 H 1.09003 * 109.46947 * 90.00024 * 1 2 3 23 23 H 1.08991 * 109.47232 * 210.00135 * 1 2 3 24 24 H 1.08998 * 109.47090 * 330.00369 * 1 2 3 25 25 H 1.08995 * 109.47451 * 154.99733 * 3 2 1 26 26 H 1.09006 * 109.47128 * 34.99840 * 3 2 1 27 27 H 1.08001 * 128.00721 * 0.25149 * 5 4 3 28 28 H 1.08004 * 126.77907 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.46672 * 299.99956 * 12 9 2 30 30 H 1.08997 * 109.46825 * 59.99943 * 12 9 2 31 31 H 1.08996 * 109.47461 * 300.00467 * 13 12 9 32 32 H 1.09006 * 109.47212 * 60.00245 * 13 12 9 33 33 H 0.97003 * 119.99750 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 6 1.4952 2.6814 -2.0817 6 6 2.0412 2.7932 -3.3162 7 8 3.1160 1.9924 -3.3297 8 7 3.2662 1.4321 -2.2688 9 16 2.2930 -1.4341 0.0006 10 8 1.3970 -2.3563 -0.6041 11 8 3.5395 -1.1194 -0.6047 12 6 2.5193 -1.8253 1.7575 13 6 3.2808 -3.1455 1.8920 14 6 3.4693 -3.4702 3.3515 15 1 3.0841 -2.8020 4.1075 16 6 4.1336 -4.6204 3.7215 17 7 4.6031 -5.4338 2.8009 18 14 4.3667 -5.0233 5.5306 19 1 3.0394 -5.1493 6.1847 20 1 5.1059 -6.3045 5.6612 21 1 5.1394 -3.9365 6.1842 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.1857 1.1177 0.4343 26 1 1.6501 2.0043 0.5895 27 1 0.6166 3.1769 -1.6958 28 1 1.6811 3.4060 -4.1295 29 1 3.0866 -1.0278 2.2371 30 1 1.5451 -1.9177 2.2375 31 1 2.7132 -3.9429 1.4123 32 1 4.2551 -3.0536 1.4118 33 1 5.0701 -6.2431 3.0614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352478936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:06 Heat of formation + Delta-G solvation = -37.298151 kcal Electronic energy + Delta-G solvation = -19251.524306 eV Core-core repulsion = 16021.096498 eV Total energy + Delta-G solvation = -3230.427808 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.84946 -38.25666 -37.82130 -36.97187 -35.91785 -34.56570 -33.15356 -32.52172 -29.21498 -27.64419 -26.13343 -24.03554 -23.52236 -22.10574 -19.96559 -19.18971 -18.61162 -18.54744 -18.16800 -17.36694 -17.16156 -16.54935 -16.11660 -15.78886 -15.12504 -14.88022 -14.46548 -14.37662 -13.91070 -13.75702 -13.61642 -13.35342 -13.18234 -12.91391 -12.81374 -12.79031 -12.57807 -12.25871 -12.16296 -11.99573 -11.77192 -11.22624 -11.11121 -10.65749 -10.50786 -10.16473 -8.27259 -6.42463 -0.77523 0.73166 1.26616 1.40159 1.44288 1.52534 1.86041 2.37406 2.58562 2.84920 3.05852 3.15369 3.33420 3.58203 3.85756 4.05778 4.07916 4.32335 4.41819 4.53239 4.66523 4.68576 4.72522 4.84356 4.98059 5.00240 5.22489 5.23903 5.24959 5.55623 5.65966 6.03186 6.71223 7.28131 7.49426 8.85037 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.004239 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.983978 B = 6604.013651 C = 6731.340967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.993 5.993 3 C 0.195 3.805 4 C -0.033 4.033 5 C -0.220 4.220 6 C -0.062 4.062 7 O 0.084 5.916 8 N -0.391 5.391 9 S 2.599 3.401 10 O -0.998 6.998 11 O -0.984 6.984 12 C -0.582 4.582 13 C 0.020 3.980 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.262 1.262 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.155 0.845 27 H 0.209 0.791 28 H 0.262 0.738 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 21.201 -5.885 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.832 5.832 3 C 0.069 3.931 4 C -0.193 4.193 5 C -0.242 4.242 6 C -0.143 4.143 7 O 0.016 5.984 8 N -0.095 5.095 9 S 2.697 3.303 10 O -0.989 6.989 11 O -0.974 6.974 12 C -0.715 4.715 13 C -0.019 4.019 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.800 3.200 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.186 1.186 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.105 0.895 26 H 0.173 0.827 27 H 0.226 0.774 28 H 0.277 0.723 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.058 19.769 -6.652 23.157 hybrid contribution -0.269 -0.254 1.125 1.184 sum -10.327 19.515 -5.527 22.761 Atomic orbital electron populations 1.21780 0.76185 1.05228 1.02682 1.57377 1.16371 1.19713 1.89776 1.19840 0.98457 0.85887 0.88867 1.24620 0.94308 1.00020 1.00328 1.23155 1.04272 1.02615 0.94119 1.27024 0.88529 0.96927 1.01802 1.84850 1.40909 1.44054 1.28636 1.74151 1.24434 1.16864 0.94036 1.05229 0.73138 0.73297 0.78626 1.93479 1.65672 1.64035 1.75677 1.93557 1.45498 1.83111 1.75214 1.30339 1.10899 1.07807 1.22425 1.18816 0.94041 0.89896 0.99106 1.21497 1.37064 1.07561 0.91874 0.90308 1.26177 0.94795 0.95949 1.03441 1.70110 1.38272 1.13342 1.35819 0.85318 0.78959 0.77645 0.78053 1.18527 1.21006 1.18646 0.93102 0.91019 0.86255 0.89517 0.82739 0.77379 0.72258 0.83849 0.83741 0.97840 0.97897 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 10.24 127.77 1.31 2.88 16 2 N -0.99 -25.69 3.10 -543.23 -1.68 -27.38 16 3 C 0.20 4.22 5.87 85.63 0.50 4.72 16 4 C -0.03 -0.81 6.91 43.58 0.30 -0.51 16 5 C -0.22 -3.30 11.12 22.40 0.25 -3.05 16 6 C -0.06 -0.89 12.30 67.17 0.83 -0.07 16 7 O 0.08 2.17 11.20 71.60 0.80 2.97 16 8 N -0.39 -12.78 12.01 -49.55 -0.60 -13.37 16 9 S 2.60 100.22 5.32 -56.49 -0.30 99.91 16 10 O -1.00 -44.72 17.09 -127.65 -2.18 -46.90 16 11 O -0.98 -45.14 16.93 -127.65 -2.16 -47.30 16 12 C -0.58 -22.59 6.12 71.98 0.44 -22.15 16 13 C 0.02 1.10 4.98 29.85 0.15 1.25 16 14 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 15 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 17 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 18 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.07 1.39 7.79 -2.39 -0.02 1.37 16 24 H 0.12 1.05 7.94 -2.39 -0.02 1.04 16 25 H 0.09 2.10 7.61 -2.39 -0.02 2.08 16 26 H 0.16 1.61 7.96 -2.38 -0.02 1.59 16 27 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 28 H 0.26 0.71 8.06 -2.91 -0.02 0.69 16 29 H 0.14 4.80 8.14 -2.39 -0.02 4.79 16 30 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -87.88 306.07 1.77 -86.11 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.11 Total: 5.22 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 4.47 Total: -46.98 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -1.99 Total: -98.60 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -3.54 Total: -91.24 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 100.22 SS G_CDS: -0.30 Total: 99.91 kcal Total: -87.88 1.77 -86.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352478936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.813 kcal (2) G-P(sol) polarization free energy of solvation -87.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds