Wall clock time and date at job start Mon Mar 30 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42908 * 113.99638 * 2 1 4 4 C 1.53005 * 109.46608 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47229 * 65.00200 * 4 3 2 6 6 C 1.42892 * 114.00212 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47398 * 179.97438 * 6 5 4 8 8 N 1.29946 * 126.28406 * 89.97654 * 7 6 5 9 9 O 1.21301 * 110.24604 * 179.97438 * 8 7 6 10 10 C 1.33636 * 109.81535 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.55292 * 179.97438 * 10 9 8 12 12 S 1.80998 * 109.47116 * 270.02365 * 11 10 9 13 13 C 1.76199 * 100.00013 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.38798 * 120.00102 * 179.72368 * 13 12 11 16 16 N 1.31626 * 120.00155 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47043 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47048 * 119.99960 * 17 15 13 20 20 H 1.48504 * 109.47465 * 240.00413 * 17 15 13 21 21 N 1.31133 * 106.89915 * 0.22073 * 10 9 8 22 22 H 1.08996 * 109.46988 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46951 * 299.99823 * 1 2 3 24 24 H 1.08995 * 109.47007 * 60.00140 * 1 2 3 25 25 H 1.09001 * 109.47114 * 60.00266 * 3 2 1 26 26 H 1.08995 * 109.47118 * 299.99788 * 3 2 1 27 27 H 1.08996 * 109.46919 * 305.00115 * 4 3 2 28 28 H 1.08999 * 109.46517 * 184.99784 * 4 3 2 29 29 H 1.09004 * 109.47190 * 59.99712 * 6 5 4 30 30 H 1.08997 * 109.47094 * 300.00509 * 6 5 4 31 31 H 1.09001 * 109.47434 * 150.02127 * 11 10 9 32 32 H 1.08999 * 109.47072 * 30.02606 * 11 10 9 33 33 H 0.97004 * 120.00604 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5798 -1.2220 6 6 5.3811 0.4202 -1.3251 7 6 5.7194 -0.2242 -2.6447 8 7 5.9658 0.3932 -3.7613 9 8 6.2043 -0.4081 -4.6402 10 6 6.1299 -1.6503 -4.1532 11 6 6.3566 -2.9291 -4.9175 12 16 4.7890 -3.4972 -5.6217 13 6 5.3324 -4.9620 -6.4362 14 1 6.3723 -5.2503 -6.3923 15 6 4.4229 -5.7489 -7.1291 16 7 3.1545 -5.4006 -7.1782 17 14 4.9991 -7.3016 -7.9933 18 1 6.4604 -7.4687 -7.7886 19 1 4.2837 -8.4753 -7.4314 20 1 4.7113 -7.1953 -9.4463 21 7 5.8165 -1.5441 -2.8843 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8514 0.5683 0.8409 28 1 3.9785 2.1766 0.0889 29 1 5.7358 -0.2118 -0.5110 30 1 5.8622 1.3964 -1.2631 31 1 6.7493 -3.6905 -4.2436 32 1 7.0721 -2.7506 -5.7202 33 1 2.5189 -5.9503 -7.6628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395434236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:37 Heat of formation + Delta-G solvation = -47.714986 kcal Electronic energy + Delta-G solvation = -18044.144507 eV Core-core repulsion = 14813.264992 eV Total energy + Delta-G solvation = -3230.879516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.71549 -39.59495 -38.36886 -36.91343 -34.75114 -34.56669 -31.58126 -30.10600 -28.62853 -27.69052 -27.12459 -24.70720 -23.56300 -22.73956 -19.90093 -19.38590 -18.57557 -18.00208 -17.71942 -16.89517 -16.84855 -16.50811 -16.35066 -16.17486 -15.67745 -15.43071 -14.78776 -14.52953 -13.77074 -13.59599 -13.26413 -13.17358 -13.11023 -12.93833 -12.89933 -12.68915 -12.36127 -12.20186 -12.07381 -11.87679 -11.16484 -11.07597 -10.79485 -10.65369 -10.39470 -8.76335 -8.37841 -6.18117 -0.17188 0.78724 1.38477 1.44822 1.53913 1.60638 1.76702 2.22885 2.32152 2.77118 2.85710 2.99318 3.08368 3.25828 3.77970 4.00047 4.10597 4.13781 4.21516 4.38328 4.41415 4.44538 4.47415 4.54491 4.55095 4.66158 4.75231 4.81228 4.84163 5.43637 6.00299 6.19691 6.25019 6.97613 7.04890 8.72085 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003794 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.816767 B = 7378.910502 C = 8554.350322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.055 3.945 4 C 0.058 3.942 5 O -0.409 6.409 6 C 0.160 3.840 7 C 0.164 3.836 8 N -0.384 5.384 9 O 0.076 5.924 10 C 0.222 3.778 11 C -0.017 4.017 12 S -0.156 6.156 13 C -0.535 4.535 14 H 0.093 0.907 15 C 0.017 3.983 16 N -0.911 5.911 17 Si 1.001 2.999 18 H -0.254 1.254 19 H -0.276 1.276 20 H -0.274 1.274 21 N -0.487 5.487 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 12.874 14.422 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.021 4.021 4 C -0.018 4.018 5 O -0.328 6.328 6 C 0.082 3.918 7 C -0.109 4.109 8 N -0.095 5.095 9 O 0.018 5.982 10 C 0.002 3.998 11 C -0.166 4.166 12 S 0.070 5.930 13 C -0.683 4.683 14 H 0.111 0.889 15 C -0.188 4.188 16 N -0.547 5.547 17 Si 0.823 3.177 18 H -0.178 1.178 19 H -0.201 1.201 20 H -0.200 1.200 21 N -0.222 5.222 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.212 13.820 14.652 20.178 hybrid contribution 0.951 -1.241 -0.753 1.735 sum 2.163 12.579 13.899 18.870 Atomic orbital electron populations 1.22888 0.79706 1.03456 1.00929 1.87955 1.21383 1.29047 1.95610 1.22805 0.92185 0.84926 1.02191 1.22898 0.93853 0.99172 0.85834 1.87997 1.20863 1.83203 1.40770 1.20585 0.83126 1.00485 0.87563 1.26060 1.00661 0.86529 0.97638 1.74547 1.19905 1.16388 0.98649 1.85277 1.63821 1.14543 1.34549 1.28127 0.93845 0.89087 0.88766 1.21803 1.03779 0.89195 1.01869 1.85395 1.08935 1.32347 1.66320 1.23138 0.98359 1.08928 1.37875 0.88912 1.26114 0.94440 1.01913 0.96369 1.70162 1.03455 1.39946 1.41161 0.84863 0.79105 0.76265 0.77489 1.17782 1.20146 1.19958 1.71936 1.19450 1.17385 1.13462 0.89642 0.91709 0.94002 0.88160 0.93058 0.91072 0.87996 0.88116 0.87311 0.85689 0.85308 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.42 -11.06 10.67 -144.34 -1.54 -12.60 16 3 C 0.06 1.03 6.32 71.98 0.45 1.49 16 4 C 0.06 1.05 6.32 71.98 0.45 1.51 16 5 O -0.41 -11.78 10.29 -144.34 -1.49 -13.26 16 6 C 0.16 3.98 6.56 71.24 0.47 4.45 16 7 C 0.16 5.68 7.85 138.46 1.09 6.77 16 8 N -0.38 -13.93 12.16 -60.34 -0.73 -14.66 16 9 O 0.08 2.87 11.31 74.90 0.85 3.71 16 10 C 0.22 8.55 7.77 88.38 0.69 9.23 16 11 C -0.02 -0.68 6.30 71.24 0.45 -0.23 16 12 S -0.16 -8.16 21.42 -56.49 -1.21 -9.37 16 13 C -0.54 -29.06 9.50 67.95 0.65 -28.41 16 14 H 0.09 4.64 7.80 -2.91 -0.02 4.62 16 15 C 0.02 0.92 5.49 84.86 0.47 1.38 16 16 N -0.91 -54.03 13.22 21.65 0.29 -53.75 16 17 Si 1.00 42.15 29.55 68.60 2.03 44.18 16 18 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 N -0.49 -18.95 11.55 -303.23 -3.50 -22.45 16 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.13 4.50 8.14 -2.39 -0.02 4.49 16 32 H 0.13 4.30 8.14 -2.40 -0.02 4.29 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -73.39 314.28 1.76 -71.63 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.11 Total: 8.63 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.96 Total: -2.06 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.95 Total: -90.86 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -2.18 Total: -22.15 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.21 Total: -9.37 kcal Total: -73.39 1.76 -71.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395434236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.917 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds