Wall clock time and date at job start Mon Mar 30 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65601 * 120.00027 * 2 1 4 4 O 1.42103 * 106.39886 * 174.99931 * 3 2 1 5 5 O 1.42095 * 106.40145 * 42.08056 * 3 2 1 6 6 N 1.65596 * 107.21751 * 288.53728 * 3 2 1 7 7 C 1.46494 * 120.00265 * 269.99699 * 6 3 2 8 8 C 1.50697 * 109.47607 * 265.00283 * 7 6 3 9 9 H 1.08003 * 119.99367 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00325 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99491 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00078 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46985 * 60.00320 * 12 10 8 14 14 H 1.48501 * 109.46923 * 179.97438 * 12 10 8 15 15 H 1.48489 * 109.47407 * 300.00075 * 12 10 8 16 16 C 1.46505 * 119.99655 * 90.00120 * 6 3 2 17 17 C 1.50703 * 109.47064 * 95.00018 * 16 6 3 18 18 C 1.34515 * 125.79060 * 89.99944 * 17 16 6 19 19 C 1.41380 * 106.83832 * 179.97438 * 18 17 16 20 20 C 1.34506 * 106.84493 * 359.97438 * 19 18 17 21 21 O 1.34306 * 125.78568 * 269.69282 * 17 16 6 22 22 H 1.08997 * 109.47429 * 59.99858 * 1 2 3 23 23 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47145 * 299.99909 * 1 2 3 25 25 H 0.97001 * 119.99749 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46996 * 25.00920 * 7 6 3 27 27 H 1.09004 * 109.47165 * 144.99843 * 7 6 3 28 28 H 0.97007 * 119.99732 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47068 * 214.99986 * 16 6 3 30 30 H 1.09001 * 109.47372 * 335.00074 * 16 6 3 31 31 H 1.07996 * 126.58016 * 0.03378 * 18 17 16 32 32 H 1.08006 * 126.57610 * 179.97438 * 19 18 17 33 33 H 1.08005 * 125.79499 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6697 1.1026 0.1188 5 8 1.6174 2.2875 0.9135 6 7 2.1026 2.1101 -1.4997 7 6 3.0600 1.8077 -2.5664 8 6 4.1166 2.8813 -2.6124 9 1 4.0788 3.7062 -1.9163 10 6 5.1313 2.8106 -3.5431 11 7 5.1775 1.8058 -4.3904 12 14 6.4405 4.1418 -3.6006 13 1 7.1515 4.1933 -2.2979 14 1 7.4111 3.8351 -4.6818 15 1 5.8001 5.4547 -3.8673 16 6 0.9766 3.0106 -1.7596 17 6 1.4204 4.4380 -1.5683 18 6 1.9368 5.2356 -2.5205 19 6 2.2102 6.4802 -1.9082 20 6 1.8440 6.3691 -0.6187 21 8 1.3619 5.1314 -0.4196 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.9499 -0.8401 0.0004 26 1 3.5297 0.8438 -2.3705 27 1 2.5385 1.7699 -3.5228 28 1 5.8917 1.7558 -5.0450 29 1 0.6295 2.8721 -2.7836 30 1 0.1649 2.7866 -1.0674 31 1 2.1087 4.9754 -3.5545 32 1 2.6322 7.3529 -2.3845 33 1 1.9208 7.1447 0.1289 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586757073.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:21 Heat of formation + Delta-G solvation = -52.370646 kcal Electronic energy + Delta-G solvation = -20308.861812 eV Core-core repulsion = 17077.780412 eV Total energy + Delta-G solvation = -3231.081400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.88361 -36.61752 -35.92201 -35.14831 -34.65661 -32.55624 -32.27939 -29.85266 -27.21666 -25.79143 -24.72813 -22.39259 -21.08294 -20.00204 -18.99804 -17.52478 -16.87825 -16.64943 -16.50459 -15.78901 -15.25527 -14.89597 -14.33176 -14.05695 -13.69588 -13.39329 -12.91890 -12.57792 -12.35592 -12.17560 -12.09657 -11.91600 -11.51336 -11.42743 -11.22927 -11.12976 -11.06508 -10.72561 -10.54095 -10.05536 -9.84291 -9.36907 -9.19658 -8.43064 -8.29588 -7.80605 -6.03505 -4.04782 1.18156 2.33981 3.23920 3.36238 3.39105 3.44988 3.57938 3.64915 4.18049 4.48666 4.95469 5.13975 5.19831 5.29282 5.33741 5.52226 5.64474 5.72842 5.74659 5.87489 5.98424 6.25714 6.41322 6.61939 6.69055 7.03614 7.15193 7.24314 7.37179 7.54385 7.79958 7.95458 8.22701 8.98192 9.59731 11.05508 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.009783 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.991634 B = 2861.528887 C = 4018.957919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.138 6.138 3 S 2.778 3.222 4 O -0.962 6.962 5 O -0.986 6.986 6 N -0.989 5.989 7 C 0.256 3.744 8 C -0.517 4.517 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.899 5.899 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.217 3.783 17 C -0.027 4.027 18 C -0.168 4.168 19 C -0.219 4.219 20 C -0.056 4.056 21 O -0.167 6.167 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.413 0.587 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.263 0.737 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 0.304 4.556 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.897 5.897 3 S 2.785 3.215 4 O -0.946 6.946 5 O -0.969 6.969 6 N -0.830 5.830 7 C 0.134 3.866 8 C -0.557 4.557 9 H 0.081 0.919 10 C -0.139 4.139 11 N -0.538 5.538 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.201 1.201 16 C 0.090 3.910 17 C -0.079 4.079 18 C -0.188 4.188 19 C -0.238 4.238 20 C -0.124 4.124 21 O -0.063 6.063 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.245 0.755 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.064 0.601 5.403 12.327 hybrid contribution 1.121 0.421 -0.677 1.376 sum -9.943 1.022 4.726 11.056 Atomic orbital electron populations 1.21347 0.79590 1.03287 1.01496 1.56068 1.15673 1.25761 1.92200 1.02160 0.73089 0.72912 0.73341 1.93647 1.31221 1.83824 1.85898 1.93569 1.76434 1.65374 1.61570 1.57976 1.36662 1.56439 1.31927 1.19124 0.85992 0.96890 0.84555 1.21442 1.08955 1.08528 1.16753 0.91942 1.24869 0.97629 0.95876 0.95494 1.69906 1.33508 1.30459 1.19944 0.86646 0.81539 0.82207 0.77667 1.20188 1.21358 1.20078 1.19390 0.87626 0.81193 1.02800 1.22875 1.06068 0.95398 0.83601 1.21556 1.02992 0.92936 1.01303 1.21791 1.07417 0.99785 0.94812 1.23867 1.03967 0.86435 0.98143 1.84082 1.64767 1.22392 1.35040 0.92563 0.90689 0.91936 0.75528 0.94275 0.94553 0.92788 0.87711 0.90167 0.83305 0.84249 0.78985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 11.08 59.85 0.66 1.63 16 2 N -1.14 -16.17 6.25 -16.63 -0.10 -16.28 16 3 S 2.78 54.70 6.12 -107.50 -0.66 54.04 16 4 O -0.96 -23.13 17.11 -57.17 -0.98 -24.11 16 5 O -0.99 -20.66 16.65 -57.17 -0.95 -21.61 16 6 N -0.99 -19.83 2.84 -116.95 -0.33 -20.16 16 7 C 0.26 6.14 5.12 -5.20 -0.03 6.12 16 8 C -0.52 -14.14 8.29 -34.44 -0.29 -14.43 16 9 H 0.06 1.77 6.83 -52.48 -0.36 1.41 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 12 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.22 3.70 5.90 -5.19 -0.03 3.67 16 17 C -0.03 -0.53 6.21 -35.62 -0.22 -0.75 16 18 C -0.17 -3.23 9.43 -39.70 -0.37 -3.60 16 19 C -0.22 -3.82 10.91 -39.71 -0.43 -4.25 16 20 C -0.06 -0.93 12.09 29.41 0.36 -0.58 16 21 O -0.17 -3.28 10.65 5.68 0.06 -3.22 16 22 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 25 H 0.41 5.15 8.96 -34.47 -0.31 4.84 16 26 H 0.04 1.01 7.61 -51.93 -0.40 0.61 16 27 H 0.04 0.87 8.00 -51.93 -0.42 0.45 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.10 1.53 8.00 -51.93 -0.42 1.11 16 30 H 0.08 1.15 7.38 -51.93 -0.38 0.77 16 31 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 32 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.19 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -34.93 301.61 -7.08 -42.01 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.93 Total: 3.32 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.45 Total: -10.53 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.30 Total: -61.50 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -1.87 Total: -48.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.66 Total: 54.04 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.93 -7.08 -42.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586757073.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.356 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds