Wall clock time and date at job start Mon Mar 30 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30179 * 126.80194 * 2 1 4 4 O 1.20921 * 111.60676 * 179.75790 * 3 2 1 5 5 C 1.34038 * 111.56234 * 0.44865 * 4 3 2 6 6 C 1.35448 * 106.45013 * 359.57010 * 5 4 3 7 7 S 1.76201 * 128.00884 * 180.24504 * 6 5 4 8 8 O 1.42102 * 106.39979 * 359.38276 * 7 6 5 9 9 O 1.42094 * 106.40440 * 132.30845 * 7 6 5 10 10 N 1.65606 * 107.21486 * 245.84770 * 7 6 5 11 11 C 1.46492 * 119.99953 * 266.06935 * 10 7 6 12 12 C 1.46500 * 119.99761 * 86.07449 * 10 7 6 13 13 H 1.09000 * 109.47806 * 355.30169 * 12 10 7 14 14 C 1.53009 * 109.46798 * 235.30473 * 12 10 7 15 15 C 1.50697 * 109.47061 * 115.30958 * 12 10 7 16 16 H 1.07994 * 120.00536 * 5.61045 * 15 12 10 17 17 C 1.37882 * 119.99575 * 185.61353 * 15 12 10 18 18 N 1.31516 * 119.99731 * 195.88451 * 17 15 12 19 19 Si 1.86802 * 120.00372 * 15.88307 * 17 15 12 20 20 H 1.48489 * 109.47073 * 93.49195 * 19 17 15 21 21 H 1.48497 * 109.47006 * 213.49547 * 19 17 15 22 22 H 1.48498 * 109.46922 * 333.49029 * 19 17 15 23 23 H 1.09002 * 109.47094 * 275.22072 * 1 2 3 24 24 H 1.09000 * 109.47395 * 35.22496 * 1 2 3 25 25 H 1.09001 * 109.47074 * 155.21891 * 1 2 3 26 26 H 1.08003 * 126.77256 * 179.81956 * 5 4 3 27 27 H 1.09004 * 109.47368 * 90.00099 * 11 10 7 28 28 H 1.09001 * 109.47337 * 210.00146 * 11 10 7 29 29 H 1.09002 * 109.47365 * 330.00093 * 11 10 7 30 30 H 1.09000 * 109.46902 * 60.09898 * 14 12 10 31 31 H 1.08994 * 109.47312 * 180.10307 * 14 12 10 32 32 H 1.08997 * 109.46742 * 300.10240 * 14 12 10 33 33 H 0.96998 * 120.00298 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 0.0048 5 6 3.6024 -0.6067 -0.0011 6 6 2.3540 -1.1320 -0.0008 7 16 1.8923 -2.8324 -0.0011 8 8 3.1027 -3.5768 -0.0164 9 8 0.9020 -2.9795 1.0073 10 7 1.1387 -3.1355 -1.4443 11 6 -0.3205 -3.0500 -1.5408 12 6 1.9314 -3.4892 -2.6244 13 1 2.9923 -3.4218 -2.3832 14 6 1.6057 -2.5235 -3.7657 15 6 1.6010 -4.8971 -3.0480 16 1 0.8098 -5.4389 -2.5512 17 6 2.3088 -5.4936 -4.0699 18 7 1.8389 -6.5759 -4.6508 19 14 3.9353 -4.7647 -4.6291 20 1 5.0496 -5.4266 -3.9044 21 1 4.0978 -4.9793 -6.0895 22 1 3.9512 -3.3086 -4.3381 23 1 -0.3633 0.0935 1.0234 24 1 -0.3634 0.8395 -0.5927 25 1 -0.3633 -0.9330 -0.4308 26 1 4.5339 -1.1533 -0.0015 27 1 -0.6078 -2.0342 -1.8125 28 1 -0.6756 -3.7441 -2.3025 29 1 -0.7640 -3.3080 -0.5791 30 1 1.8463 -1.5053 -3.4599 31 1 2.1941 -2.7877 -4.6443 32 1 0.5445 -2.5896 -4.0057 33 1 2.3370 -6.9958 -5.3695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:02 Heat of formation + Delta-G solvation = -2.212467 kcal Electronic energy + Delta-G solvation = -20347.388090 eV Core-core repulsion = 17118.481711 eV Total energy + Delta-G solvation = -3228.906379 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.12818 -36.93348 -36.55012 -35.49142 -34.99386 -32.58669 -32.06477 -30.08850 -28.84138 -25.89585 -25.11494 -24.00651 -21.62742 -20.80386 -18.93463 -17.95865 -17.86975 -17.27965 -16.65692 -16.11335 -15.62289 -14.88716 -14.33789 -13.81503 -13.71418 -13.39863 -13.03287 -12.90978 -12.66289 -12.44018 -12.15431 -12.06774 -11.78605 -11.73020 -11.54777 -11.13438 -11.07688 -11.01930 -10.70315 -10.47086 -10.33335 -9.89907 -9.75407 -9.57502 -8.57984 -8.21482 -6.21680 -4.17638 0.67740 1.07662 1.79189 3.00734 3.21337 3.28818 3.34668 3.43650 3.84407 4.13902 4.23871 4.31971 4.58205 5.08137 5.13418 5.17171 5.37733 5.40323 5.47668 5.55120 5.82064 5.97943 6.06298 6.25401 6.29407 6.48762 6.55321 6.83529 7.17292 7.28396 7.57496 7.97284 8.38471 8.85800 9.41618 10.90899 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.007504 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.592931 B = 3730.495272 C = 4032.219344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.104 3.896 3 N -0.369 5.369 4 O 0.097 5.903 5 C 0.074 3.926 6 C -0.784 4.784 7 S 2.712 3.288 8 O -0.947 6.947 9 O -0.959 6.959 10 N -0.969 5.969 11 C 0.087 3.913 12 C 0.245 3.755 13 H 0.049 0.951 14 C -0.155 4.155 15 C -0.530 4.530 16 H 0.083 0.917 17 C 0.082 3.918 18 N -0.884 5.884 19 Si 0.857 3.143 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.256 1.256 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.235 0.765 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 12.236 6.657 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.057 4.057 3 N -0.078 5.078 4 O 0.039 5.961 5 C -0.010 4.010 6 C -0.869 4.869 7 S 2.795 3.205 8 O -0.937 6.937 9 O -0.949 6.949 10 N -0.809 5.809 11 C -0.058 4.058 12 C 0.140 3.860 13 H 0.066 0.934 14 C -0.214 4.214 15 C -0.569 4.569 16 H 0.101 0.899 17 C -0.122 4.122 18 N -0.521 5.521 19 Si 0.684 3.316 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.180 1.180 23 H 0.111 0.889 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.251 0.749 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.282 12.933 7.183 14.797 hybrid contribution 1.049 0.090 -0.777 1.308 sum 0.767 13.023 6.406 14.533 Atomic orbital electron populations 1.20590 0.85192 1.05072 1.04608 1.23134 0.98810 0.86158 0.97629 1.73783 0.89117 1.23924 1.20933 1.84831 1.22122 1.23158 1.66011 1.26129 0.99990 0.83405 0.91488 1.33847 1.00565 1.28216 1.24266 1.01631 0.73660 0.72025 0.73135 1.93589 1.46706 1.66986 1.86418 1.93529 1.59725 1.85275 1.56392 1.57123 1.14558 1.81896 1.27353 1.21565 0.79239 1.01253 1.03784 1.19038 0.90448 0.95563 0.80905 0.93373 1.22453 1.02133 0.96907 0.99907 1.21066 1.20652 0.96665 1.18474 0.89897 1.24830 0.97330 0.94904 0.95161 1.69947 1.37599 1.21167 1.23365 0.87272 0.85560 0.80668 0.78121 1.19957 1.21046 1.17986 0.88868 0.89558 0.88985 0.74893 0.93858 0.88779 0.90960 0.95714 0.92369 0.92404 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.41 36.01 0.37 -0.77 16 2 C 0.10 1.52 7.33 -82.10 -0.60 0.92 16 3 N -0.37 -5.49 12.07 33.42 0.40 -5.08 16 4 O 0.10 1.31 11.20 17.18 0.19 1.50 16 5 C 0.07 0.95 12.05 29.74 0.36 1.31 16 6 C -0.78 -11.95 6.38 -39.38 -0.25 -12.20 16 7 S 2.71 48.79 5.68 -107.50 -0.61 48.18 16 8 O -0.95 -19.51 16.59 -57.17 -0.95 -20.46 16 9 O -0.96 -17.95 16.56 -57.17 -0.95 -18.90 16 10 N -0.97 -18.22 3.06 -115.85 -0.35 -18.57 16 11 C 0.09 1.37 8.29 59.84 0.50 1.87 16 12 C 0.24 5.35 2.11 -69.08 -0.15 5.20 16 13 H 0.05 1.08 5.65 -51.93 -0.29 0.79 16 14 C -0.15 -3.03 8.50 37.16 0.32 -2.71 16 15 C -0.53 -13.86 8.56 -34.44 -0.29 -14.16 16 16 H 0.08 2.34 7.71 -52.49 -0.40 1.94 16 17 C 0.08 2.23 5.35 -17.82 -0.10 2.13 16 18 N -0.88 -25.56 13.96 55.43 0.77 -24.79 16 19 Si 0.86 20.09 25.86 -169.99 -4.40 15.70 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.26 -5.48 5.49 56.52 0.31 -5.17 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 1.05 4.89 -51.93 -0.25 0.80 16 26 H 0.23 2.08 8.06 -52.48 -0.42 1.66 16 27 H 0.04 0.55 6.52 -51.93 -0.34 0.21 16 28 H 0.09 1.59 7.27 -51.93 -0.38 1.21 16 29 H 0.07 1.05 7.00 -51.93 -0.36 0.68 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.18 5.08 -51.93 -0.26 0.92 16 32 H 0.06 1.07 7.56 -51.93 -0.39 0.68 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 286.11 15.07 4.31 4.31 Total: -1.00 -32.23 286.11 -5.02 -37.26 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.61 Total: -0.74 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 0.16 Total: -18.41 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.82 Total: -48.44 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.70 Total: -37.86 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.40 Total: 15.70 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -0.61 Total: 48.18 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.23 -5.02 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.044 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds