Wall clock time and date at job start Mon Mar 30 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30179 * 126.80194 * 2 1 4 4 O 1.20921 * 111.60676 * 179.75790 * 3 2 1 5 5 C 1.34038 * 111.56234 * 0.44865 * 4 3 2 6 6 C 1.35448 * 106.45013 * 359.57010 * 5 4 3 7 7 S 1.76201 * 128.00884 * 180.24504 * 6 5 4 8 8 O 1.42102 * 106.39979 * 359.38276 * 7 6 5 9 9 O 1.42094 * 106.40440 * 132.30845 * 7 6 5 10 10 N 1.65606 * 107.21486 * 245.84770 * 7 6 5 11 11 C 1.46492 * 119.99953 * 266.06935 * 10 7 6 12 12 C 1.46500 * 119.99761 * 86.07449 * 10 7 6 13 13 H 1.09000 * 109.47806 * 355.30169 * 12 10 7 14 14 C 1.53009 * 109.46798 * 235.30473 * 12 10 7 15 15 C 1.50697 * 109.47061 * 115.30958 * 12 10 7 16 16 H 1.07994 * 120.00536 * 5.61045 * 15 12 10 17 17 C 1.37882 * 119.99575 * 185.61353 * 15 12 10 18 18 N 1.31516 * 119.99731 * 195.88451 * 17 15 12 19 19 Si 1.86802 * 120.00372 * 15.88307 * 17 15 12 20 20 H 1.48489 * 109.47073 * 93.49195 * 19 17 15 21 21 H 1.48497 * 109.47006 * 213.49547 * 19 17 15 22 22 H 1.48498 * 109.46922 * 333.49029 * 19 17 15 23 23 H 1.09002 * 109.47094 * 275.22072 * 1 2 3 24 24 H 1.09000 * 109.47395 * 35.22496 * 1 2 3 25 25 H 1.09001 * 109.47074 * 155.21891 * 1 2 3 26 26 H 1.08003 * 126.77256 * 179.81956 * 5 4 3 27 27 H 1.09004 * 109.47368 * 90.00099 * 11 10 7 28 28 H 1.09001 * 109.47337 * 210.00146 * 11 10 7 29 29 H 1.09002 * 109.47365 * 330.00093 * 11 10 7 30 30 H 1.09000 * 109.46902 * 60.09898 * 14 12 10 31 31 H 1.08994 * 109.47312 * 180.10307 * 14 12 10 32 32 H 1.08997 * 109.46742 * 300.10240 * 14 12 10 33 33 H 0.96998 * 120.00298 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 0.0048 5 6 3.6024 -0.6067 -0.0011 6 6 2.3540 -1.1320 -0.0008 7 16 1.8923 -2.8324 -0.0011 8 8 3.1027 -3.5768 -0.0164 9 8 0.9020 -2.9795 1.0073 10 7 1.1387 -3.1355 -1.4443 11 6 -0.3205 -3.0500 -1.5408 12 6 1.9314 -3.4892 -2.6244 13 1 2.9923 -3.4218 -2.3832 14 6 1.6057 -2.5235 -3.7657 15 6 1.6010 -4.8971 -3.0480 16 1 0.8098 -5.4389 -2.5512 17 6 2.3088 -5.4936 -4.0699 18 7 1.8389 -6.5759 -4.6508 19 14 3.9353 -4.7647 -4.6291 20 1 5.0496 -5.4266 -3.9044 21 1 4.0978 -4.9793 -6.0895 22 1 3.9512 -3.3086 -4.3381 23 1 -0.3633 0.0935 1.0234 24 1 -0.3634 0.8395 -0.5927 25 1 -0.3633 -0.9330 -0.4308 26 1 4.5339 -1.1533 -0.0015 27 1 -0.6078 -2.0342 -1.8125 28 1 -0.6756 -3.7441 -2.3025 29 1 -0.7640 -3.3080 -0.5791 30 1 1.8463 -1.5053 -3.4599 31 1 2.1941 -2.7877 -4.6443 32 1 0.5445 -2.5896 -4.0057 33 1 2.3370 -6.9958 -5.3695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:02 Heat of formation + Delta-G solvation = -27.015369 kcal Electronic energy + Delta-G solvation = -20348.463625 eV Core-core repulsion = 17118.481711 eV Total energy + Delta-G solvation = -3229.981913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.19884 -38.42138 -38.10949 -36.97981 -36.04899 -34.51964 -33.14210 -31.73505 -29.80932 -27.33777 -26.94032 -25.16446 -22.76334 -22.35931 -20.21179 -19.30808 -19.11046 -18.84593 -18.18174 -17.44974 -17.17115 -16.41524 -15.60288 -15.37137 -14.94649 -14.63977 -14.32761 -14.25628 -14.16526 -13.70868 -13.65849 -13.47676 -13.23811 -13.11475 -12.99727 -12.80429 -12.65362 -12.26525 -12.22198 -12.09125 -11.64871 -11.46336 -11.43261 -10.92803 -10.58926 -9.76788 -8.28812 -6.27993 -0.70542 0.01080 0.70843 1.36006 1.44288 1.48195 1.92058 2.14184 2.37001 2.63346 2.91361 3.06590 3.18300 3.50281 3.84707 4.04331 4.26815 4.43519 4.51519 4.53973 4.61059 4.70808 4.75964 4.82146 4.94862 5.02635 5.22377 5.34295 5.53366 5.57130 5.86336 6.36168 6.74799 6.93820 7.34470 8.87468 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.007504 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.592931 B = 3730.495272 C = 4032.219344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.102 3.898 3 N -0.384 5.384 4 O 0.101 5.899 5 C 0.097 3.903 6 C -0.806 4.806 7 S 2.729 3.271 8 O -0.979 6.979 9 O -0.972 6.972 10 N -0.979 5.979 11 C 0.081 3.919 12 C 0.246 3.754 13 H 0.048 0.952 14 C -0.150 4.150 15 C -0.531 4.531 16 H 0.045 0.955 17 C 0.026 3.974 18 N -0.935 5.935 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.219 1.219 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.270 0.730 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 14.884 6.883 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.060 4.060 3 N -0.094 5.094 4 O 0.045 5.955 5 C 0.012 3.988 6 C -0.895 4.895 7 S 2.816 3.184 8 O -0.969 6.969 9 O -0.963 6.963 10 N -0.819 5.819 11 C -0.064 4.064 12 C 0.141 3.859 13 H 0.065 0.935 14 C -0.209 4.209 15 C -0.570 4.570 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.574 5.574 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.142 1.142 23 H 0.123 0.877 24 H 0.124 0.876 25 H 0.110 0.890 26 H 0.286 0.714 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.526 15.575 7.421 17.261 hybrid contribution 0.723 -0.727 -0.732 1.260 sum 1.249 14.848 6.689 16.333 Atomic orbital electron populations 1.20783 0.83639 1.05917 1.05845 1.23544 1.00007 0.85636 0.96827 1.73792 0.89512 1.24214 1.21873 1.84830 1.21715 1.23315 1.65688 1.26809 1.00515 0.83070 0.88385 1.33341 1.02151 1.26523 1.27497 1.00696 0.72755 0.72502 0.72409 1.93547 1.47828 1.68832 1.86719 1.93508 1.60110 1.86058 1.56587 1.57032 1.15564 1.82737 1.26547 1.21743 0.77793 1.02994 1.03832 1.18843 0.90802 0.93527 0.82746 0.93475 1.22334 1.02442 0.97780 0.98386 1.21369 1.19168 0.98850 1.17601 0.93673 1.25638 1.00696 0.95418 0.95610 1.70082 1.39321 1.23326 1.24655 0.86422 0.80653 0.82046 0.77612 1.20547 1.20759 1.14162 0.87669 0.87615 0.88959 0.71428 0.90225 0.90730 0.90063 0.92648 0.93099 0.91945 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 10.41 71.24 0.74 -1.39 16 2 C 0.10 2.65 7.33 43.58 0.32 2.97 16 3 N -0.38 -10.24 12.07 -49.55 -0.60 -10.84 16 4 O 0.10 2.38 11.20 71.66 0.80 3.18 16 5 C 0.10 2.13 12.05 67.17 0.81 2.94 16 6 C -0.81 -22.27 6.38 22.40 0.14 -22.13 16 7 S 2.73 94.05 5.68 -56.49 -0.32 93.73 16 8 O -0.98 -39.25 16.59 -128.00 -2.12 -41.37 16 9 O -0.97 -35.28 16.56 -128.00 -2.12 -37.40 16 10 N -0.98 -35.53 3.06 -520.45 -1.59 -37.13 16 11 C 0.08 2.46 8.29 127.77 1.06 3.52 16 12 C 0.25 10.41 2.11 44.25 0.09 10.50 16 13 H 0.05 2.02 5.65 -2.39 -0.01 2.00 16 14 C -0.15 -5.47 8.50 71.99 0.61 -4.85 16 15 C -0.53 -28.19 8.56 25.60 0.22 -27.97 16 16 H 0.05 2.66 7.71 -2.91 -0.02 2.64 16 17 C 0.03 1.42 5.35 84.66 0.45 1.87 16 18 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 19 Si 0.91 40.69 25.86 68.60 1.77 42.46 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.22 -8.46 5.49 99.48 0.55 -7.91 16 23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 1.84 4.89 -2.39 -0.01 1.83 16 26 H 0.27 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.08 1.82 6.52 -2.39 -0.02 1.80 16 28 H 0.07 2.54 7.27 -2.39 -0.02 2.52 16 29 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.91 5.08 -2.39 -0.01 1.90 16 32 H 0.06 2.19 7.56 -2.39 -0.02 2.17 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -70.27 286.11 1.55 -68.72 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.98 Total: 8.54 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 4.45 Total: -34.55 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -1.89 Total: -103.32 kcal Atomic # 8 Polarization: -72.14 SS G_CDS: -3.44 Total: -75.58 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.77 Total: 42.46 kcal Atomic # 16 Polarization: 94.05 SS G_CDS: -0.32 Total: 93.73 kcal Total: -70.27 1.55 -68.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.708 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds