Wall clock time and date at job start Mon Mar 30 2020 01:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30175 * 126.80361 * 2 1 4 4 O 1.20923 * 111.60487 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56779 * 359.76184 * 4 3 2 6 6 C 1.35452 * 106.44269 * 0.38024 * 5 4 3 7 7 S 1.76199 * 128.00441 * 179.91279 * 6 5 4 8 8 O 1.42106 * 106.40481 * 228.22089 * 7 6 5 9 9 O 1.42100 * 106.40287 * 1.13722 * 7 6 5 10 10 N 1.65599 * 107.21905 * 114.67916 * 7 6 5 11 11 C 1.46501 * 119.99998 * 90.00171 * 10 7 6 12 12 C 1.46501 * 120.00138 * 270.00156 * 10 7 6 13 13 H 1.09005 * 109.46686 * 359.97438 * 12 10 7 14 14 C 1.52994 * 109.47500 * 119.99704 * 12 10 7 15 15 C 1.50699 * 109.47042 * 239.99933 * 12 10 7 16 16 H 1.07997 * 120.00206 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99890 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00082 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99835 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46669 * 60.00889 * 19 17 15 21 21 H 1.48502 * 109.46906 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47279 * 300.00751 * 19 17 15 23 23 H 1.08997 * 109.47162 * 269.98099 * 1 2 3 24 24 H 1.09003 * 109.46907 * 29.97599 * 1 2 3 25 25 H 1.08998 * 109.47540 * 149.97289 * 1 2 3 26 26 H 1.07994 * 126.77798 * 180.28886 * 5 4 3 27 27 H 1.08992 * 109.47416 * 89.99896 * 11 10 7 28 28 H 1.09004 * 109.47096 * 210.00036 * 11 10 7 29 29 H 1.08998 * 109.46804 * 329.99274 * 11 10 7 30 30 H 1.08997 * 109.46971 * 300.00429 * 14 12 10 31 31 H 1.08999 * 109.46900 * 59.99969 * 14 12 10 32 32 H 1.08993 * 109.47389 * 180.02562 * 14 12 10 33 33 H 0.97005 * 120.00284 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0043 6 6 2.3539 -1.1320 -0.0006 7 16 1.8922 -2.8324 0.0000 8 8 0.9151 -2.9834 -1.0207 9 8 3.1021 -3.5768 0.0338 10 7 1.1198 -3.1302 1.4343 11 6 -0.3320 -2.9606 1.5334 12 6 1.8882 -3.5631 2.6041 13 1 2.9435 -3.6328 2.3399 14 6 1.7111 -2.5479 3.7349 15 6 1.3943 -4.9124 3.0583 16 1 0.5888 -5.3990 2.5284 17 6 1.9714 -5.5261 4.1498 18 7 2.9525 -4.9338 4.7948 19 14 1.3586 -7.1984 4.7133 20 1 1.5297 -8.1838 3.6156 21 1 2.1376 -7.6373 5.8990 22 1 -0.0789 -7.1033 5.0735 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 4.5338 -1.1535 0.0093 27 1 -0.8254 -3.8995 1.2826 28 1 -0.5955 -2.6723 2.5511 29 1 -0.6552 -2.1838 0.8405 30 1 2.0684 -1.5720 3.4063 31 1 0.6558 -2.4785 3.9988 32 1 2.2832 -2.8698 4.6050 33 1 3.3583 -5.3654 5.5629 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:04 Heat of formation + Delta-G solvation = -8.502794 kcal Electronic energy + Delta-G solvation = -20260.411309 eV Core-core repulsion = 17031.232161 eV Total energy + Delta-G solvation = -3229.179148 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.03471 -36.82987 -36.32183 -35.39152 -34.91318 -32.66042 -31.96861 -29.30446 -28.71445 -25.68863 -25.21229 -23.92538 -21.54321 -20.74179 -18.84510 -17.87754 -17.77021 -16.87231 -16.55321 -16.05110 -15.42112 -14.74826 -14.34827 -13.64642 -13.55420 -13.35308 -13.10040 -12.90238 -12.67412 -12.09104 -11.92940 -11.66995 -11.62066 -11.43774 -11.25721 -11.03256 -10.96144 -10.85052 -10.62473 -10.38201 -10.34623 -10.04178 -9.81017 -9.33791 -8.50650 -8.08723 -6.12341 -4.19405 0.80016 1.18216 1.87616 3.10462 3.27955 3.32616 3.35415 3.56329 3.94326 4.22557 4.32664 4.36585 4.68432 5.18987 5.25016 5.26774 5.37226 5.45001 5.51662 5.64858 5.94653 6.08671 6.27832 6.53454 6.68768 6.72215 6.93312 7.33136 7.55167 7.71450 7.96946 8.05960 8.20006 8.82596 9.46678 10.93433 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.006411 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.010551 B = 4366.700421 C = 4508.406039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.103 3.897 3 N -0.370 5.370 4 O 0.096 5.904 5 C 0.076 3.924 6 C -0.783 4.783 7 S 2.711 3.289 8 O -0.965 6.965 9 O -0.949 6.949 10 N -0.974 5.974 11 C 0.100 3.900 12 C 0.267 3.733 13 H 0.061 0.939 14 C -0.150 4.150 15 C -0.521 4.521 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.235 0.765 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.008 0.992 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 8.427 -6.476 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.059 4.059 3 N -0.078 5.078 4 O 0.038 5.962 5 C -0.008 4.008 6 C -0.867 4.867 7 S 2.795 3.205 8 O -0.955 6.955 9 O -0.939 6.939 10 N -0.815 5.815 11 C -0.046 4.046 12 C 0.164 3.836 13 H 0.079 0.921 14 C -0.209 4.209 15 C -0.561 4.561 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.251 0.749 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.344 9.242 -6.988 11.821 hybrid contribution -0.161 -1.011 0.754 1.272 sum -2.505 8.230 -6.233 10.624 Atomic orbital electron populations 1.20649 0.85424 1.05291 1.04537 1.23097 0.98719 0.86253 0.97805 1.73774 0.89157 1.23961 1.20937 1.84824 1.22076 1.23227 1.66092 1.26117 1.00015 0.83307 0.91387 1.33840 1.00541 1.28243 1.24102 1.01630 0.73629 0.72042 0.73205 1.93522 1.60621 1.85189 1.56167 1.93581 1.46622 1.67160 1.86537 1.57390 1.15109 1.79929 1.29118 1.21386 0.79955 1.00672 1.02560 1.18823 0.91546 0.93268 0.79928 0.92095 1.22141 1.00592 0.95566 1.02636 1.21265 1.19454 1.02156 1.13192 0.91767 1.24905 0.94779 0.97947 0.96166 1.69841 1.24127 1.38375 1.20540 0.86531 0.78748 0.83853 0.78140 1.20072 1.21207 1.20203 0.88829 0.89581 0.88286 0.74879 0.92637 0.90642 0.92818 0.97292 0.94553 0.88668 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.25 36.00 0.33 -0.90 16 2 C 0.10 1.57 7.33 -82.10 -0.60 0.96 16 3 N -0.37 -5.75 12.07 33.42 0.40 -5.34 16 4 O 0.10 1.37 11.20 17.17 0.19 1.56 16 5 C 0.08 1.03 12.05 29.74 0.36 1.39 16 6 C -0.78 -12.51 6.38 -39.38 -0.25 -12.76 16 7 S 2.71 50.65 5.75 -107.50 -0.62 50.03 16 8 O -0.96 -18.66 16.20 -57.17 -0.93 -19.59 16 9 O -0.95 -20.30 16.40 -57.17 -0.94 -21.24 16 10 N -0.97 -19.11 3.06 -115.86 -0.35 -19.47 16 11 C 0.10 1.64 9.53 59.85 0.57 2.21 16 12 C 0.27 6.23 2.62 -69.09 -0.18 6.05 16 13 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 14 C -0.15 -3.29 8.95 37.15 0.33 -2.95 16 15 C -0.52 -13.46 8.37 -34.44 -0.29 -13.75 16 16 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.03 11.32 55.43 0.63 -23.41 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.10 1.20 5.98 -51.93 -0.31 0.89 16 26 H 0.24 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 29 H 0.05 0.71 4.84 -51.93 -0.25 0.46 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.74 6.66 -51.93 -0.35 0.40 16 32 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -31.19 289.91 -5.64 -36.83 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.56 Total: -1.09 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 0.18 Total: -18.15 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.68 Total: -48.22 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.67 Total: -39.26 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 50.65 SS G_CDS: -0.62 Total: 50.03 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.19 -5.64 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.332 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds