Wall clock time and date at job start Mon Mar 30 2020 01:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30174 * 126.79927 * 2 1 4 4 O 1.20921 * 111.60535 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56278 * 359.76505 * 4 3 2 6 6 C 1.35445 * 106.45127 * 0.37512 * 5 4 3 7 7 S 1.76199 * 128.01056 * 179.91394 * 6 5 4 8 8 O 1.42095 * 106.40227 * 1.13918 * 7 6 5 9 9 O 1.42107 * 106.40094 * 228.22335 * 7 6 5 10 10 N 1.65593 * 107.21807 * 114.68173 * 7 6 5 11 11 C 1.46506 * 120.00245 * 65.00204 * 10 7 6 12 12 C 1.52997 * 109.47289 * 165.00019 * 11 10 7 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99653 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00192 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47123 * 89.99910 * 18 16 14 20 20 H 1.48506 * 109.46940 * 210.00033 * 18 16 14 21 21 H 1.48501 * 109.47006 * 329.99902 * 18 16 14 22 22 H 1.09006 * 109.46996 * 269.96887 * 1 2 3 23 23 H 1.09000 * 109.48042 * 29.97418 * 1 2 3 24 24 H 1.09001 * 109.47539 * 149.98058 * 1 2 3 25 25 H 1.08004 * 126.77494 * 180.29157 * 5 4 3 26 26 H 0.97000 * 120.00411 * 244.99876 * 10 7 6 27 27 H 1.09001 * 109.47060 * 285.00288 * 11 10 7 28 28 H 1.09004 * 109.47073 * 44.99777 * 11 10 7 29 29 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 30 30 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 31 31 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 32 32 H 1.09004 * 109.47298 * 59.99717 * 13 12 11 33 33 H 0.96997 * 120.00125 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 2.3540 -1.1320 -0.0006 7 16 1.8923 -2.8325 0.0000 8 8 3.1023 -3.5767 0.0337 9 8 0.9152 -2.9833 -1.0208 10 7 1.1200 -3.1302 1.4343 11 6 -0.1582 -2.4771 1.7274 12 6 -0.8336 -3.1832 2.9047 13 6 -2.1688 -2.5015 3.2103 14 6 -2.8344 -3.1974 4.3696 15 1 -2.3530 -4.0411 4.8414 16 6 -4.0574 -2.7561 4.8285 17 7 -4.6385 -3.3637 5.8398 18 14 -4.8897 -1.2962 4.0128 19 1 -5.7567 -1.7752 2.9064 20 1 -5.7171 -0.5754 5.0135 21 1 -3.8570 -0.3773 3.4701 22 1 -0.3633 -0.0006 1.0277 23 1 -0.3635 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 4.5339 -1.1533 0.0093 26 1 1.5139 -3.7371 2.0804 27 1 0.0178 -1.4321 1.9828 28 1 -0.8042 -2.5330 0.8511 29 1 -1.0097 -4.2281 2.6491 30 1 -0.1877 -3.1272 3.7809 31 1 -1.9931 -1.4565 3.4657 32 1 -2.8145 -2.5577 2.3339 33 1 -5.4990 -3.0535 6.1624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:00 Heat of formation + Delta-G solvation = -24.683129 kcal Electronic energy + Delta-G solvation = -19228.479091 eV Core-core repulsion = 15998.598311 eV Total energy + Delta-G solvation = -3229.880780 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.41652 -37.48248 -36.35448 -36.04726 -35.20404 -33.29604 -32.36854 -31.26160 -29.11606 -26.88986 -24.40849 -22.90725 -21.87455 -20.58701 -19.65305 -18.62253 -18.14443 -17.44070 -16.92378 -16.61506 -16.10874 -15.10102 -14.85476 -14.66715 -14.15423 -13.61149 -13.48811 -13.00130 -12.86016 -12.52462 -12.45922 -12.27598 -12.18411 -12.13908 -11.77351 -11.46098 -11.16130 -11.00664 -10.88449 -10.19049 -10.14385 -9.92476 -9.78337 -9.45395 -9.27561 -8.60214 -6.10391 -4.09488 0.17139 0.74652 1.54145 2.68276 2.94981 3.26425 3.34389 3.35167 3.37940 3.74223 3.95040 4.24426 4.39141 4.71021 4.93495 5.07575 5.17033 5.21045 5.24164 5.38209 5.51523 5.62594 5.73654 5.92584 6.32269 6.47183 6.68509 6.91793 7.15177 7.28466 7.70681 7.73598 8.45965 8.93968 9.51285 11.02958 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.004774 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.037351 B = 5863.190293 C = 6520.605845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.107 3.893 3 N -0.363 5.363 4 O 0.102 5.898 5 C 0.079 3.921 6 C -0.789 4.789 7 S 2.728 3.272 8 O -0.962 6.962 9 O -0.945 6.945 10 N -1.107 6.107 11 C 0.102 3.898 12 C -0.109 4.109 13 C -0.014 4.014 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.236 0.764 26 H 0.421 0.579 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.799 5.431 -12.132 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 N -0.071 5.071 4 O 0.044 5.956 5 C -0.006 4.006 6 C -0.875 4.875 7 S 2.811 3.189 8 O -0.952 6.952 9 O -0.935 6.935 10 N -0.870 5.870 11 C -0.023 4.023 12 C -0.148 4.148 13 C -0.052 4.052 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.120 0.880 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.252 0.748 26 H 0.257 0.743 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.543 6.394 -12.828 21.143 hybrid contribution -0.288 0.362 0.327 0.566 sum 15.255 6.756 -12.501 20.848 Atomic orbital electron populations 1.20877 0.84867 1.05970 1.05326 1.23231 0.98989 0.85964 0.97302 1.73857 0.88960 1.23778 1.20472 1.84877 1.22250 1.22952 1.65552 1.26132 0.99708 0.83714 0.91018 1.33405 1.00813 1.27374 1.25952 1.01059 0.73124 0.71604 0.73104 1.93584 1.46520 1.68439 1.86638 1.93610 1.60341 1.84433 1.55142 1.55418 1.33214 1.59325 1.39045 1.21953 0.82642 0.96392 1.01305 1.21690 0.98191 1.00047 0.94870 1.19560 0.92086 0.96277 0.97294 1.21085 1.04155 1.16309 1.14555 0.90954 1.25036 0.97064 0.96661 0.94703 1.69907 1.16995 1.41186 1.25983 0.86788 0.79800 0.83321 0.79420 1.20156 1.21399 1.18974 0.87995 0.89104 0.88068 0.74810 0.74284 0.91898 0.90140 0.91555 0.91857 0.96387 0.96546 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 8.75 36.00 0.32 -0.92 16 2 C 0.11 1.29 7.31 -82.10 -0.60 0.69 16 3 N -0.36 -4.60 12.07 33.42 0.40 -4.20 16 4 O 0.10 1.08 11.20 17.17 0.19 1.27 16 5 C 0.08 0.68 12.05 29.74 0.36 1.04 16 6 C -0.79 -8.61 6.35 -39.38 -0.25 -8.86 16 7 S 2.73 31.96 5.84 -107.50 -0.63 31.33 16 8 O -0.96 -12.38 17.84 -57.17 -1.02 -13.40 16 9 O -0.95 -13.74 16.59 -57.17 -0.95 -14.69 16 10 N -1.11 -12.62 6.00 -10.61 -0.06 -12.68 16 11 C 0.10 1.37 4.93 -4.04 -0.02 1.35 16 12 C -0.11 -1.86 5.29 -26.73 -0.14 -2.00 16 13 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 14 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 18 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 22 H 0.10 1.05 6.24 -51.93 -0.32 0.72 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.10 1.08 6.45 -51.93 -0.33 0.74 16 25 H 0.24 0.94 8.06 -52.48 -0.42 0.51 16 26 H 0.42 4.09 8.65 -34.47 -0.30 3.79 16 27 H 0.06 0.77 5.69 -51.93 -0.30 0.47 16 28 H 0.08 1.05 7.04 -51.93 -0.37 0.69 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 32 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -34.42 293.20 -6.09 -40.50 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -3.66 Total: -0.51 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.88 Total: -21.84 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.11 Total: -43.24 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.78 Total: -26.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 31.96 SS G_CDS: -0.63 Total: 31.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.42 -6.09 -40.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.818 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds