Wall clock time and date at job start Mon Mar 30 2020 01:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30174 * 126.79927 * 2 1 4 4 O 1.20921 * 111.60535 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56278 * 359.76505 * 4 3 2 6 6 C 1.35445 * 106.45127 * 0.37512 * 5 4 3 7 7 S 1.76199 * 128.01056 * 179.91394 * 6 5 4 8 8 O 1.42095 * 106.40227 * 1.13918 * 7 6 5 9 9 O 1.42107 * 106.40094 * 228.22335 * 7 6 5 10 10 N 1.65593 * 107.21807 * 114.68173 * 7 6 5 11 11 C 1.46506 * 120.00245 * 65.00204 * 10 7 6 12 12 C 1.52997 * 109.47289 * 165.00019 * 11 10 7 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99653 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00192 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47123 * 89.99910 * 18 16 14 20 20 H 1.48506 * 109.46940 * 210.00033 * 18 16 14 21 21 H 1.48501 * 109.47006 * 329.99902 * 18 16 14 22 22 H 1.09006 * 109.46996 * 269.96887 * 1 2 3 23 23 H 1.09000 * 109.48042 * 29.97418 * 1 2 3 24 24 H 1.09001 * 109.47539 * 149.98058 * 1 2 3 25 25 H 1.08004 * 126.77494 * 180.29157 * 5 4 3 26 26 H 0.97000 * 120.00411 * 244.99876 * 10 7 6 27 27 H 1.09001 * 109.47060 * 285.00288 * 11 10 7 28 28 H 1.09004 * 109.47073 * 44.99777 * 11 10 7 29 29 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 30 30 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 31 31 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 32 32 H 1.09004 * 109.47298 * 59.99717 * 13 12 11 33 33 H 0.96997 * 120.00125 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 2.3540 -1.1320 -0.0006 7 16 1.8923 -2.8325 0.0000 8 8 3.1023 -3.5767 0.0337 9 8 0.9152 -2.9833 -1.0208 10 7 1.1200 -3.1302 1.4343 11 6 -0.1582 -2.4771 1.7274 12 6 -0.8336 -3.1832 2.9047 13 6 -2.1688 -2.5015 3.2103 14 6 -2.8344 -3.1974 4.3696 15 1 -2.3530 -4.0411 4.8414 16 6 -4.0574 -2.7561 4.8285 17 7 -4.6385 -3.3637 5.8398 18 14 -4.8897 -1.2962 4.0128 19 1 -5.7567 -1.7752 2.9064 20 1 -5.7171 -0.5754 5.0135 21 1 -3.8570 -0.3773 3.4701 22 1 -0.3633 -0.0006 1.0277 23 1 -0.3635 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 4.5339 -1.1533 0.0093 26 1 1.5139 -3.7371 2.0804 27 1 0.0178 -1.4321 1.9828 28 1 -0.8042 -2.5330 0.8511 29 1 -1.0097 -4.2281 2.6491 30 1 -0.1877 -3.1272 3.7809 31 1 -1.9931 -1.4565 3.4657 32 1 -2.8145 -2.5577 2.3339 33 1 -5.4990 -3.0535 6.1624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:00 Heat of formation + Delta-G solvation = -52.006245 kcal Electronic energy + Delta-G solvation = -19229.663910 eV Core-core repulsion = 15998.598311 eV Total energy + Delta-G solvation = -3231.065599 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.23656 -38.48647 -37.51365 -37.06027 -36.05668 -35.09506 -33.16404 -32.95836 -29.93963 -28.50779 -25.25561 -24.43896 -22.64971 -22.09627 -20.60565 -19.52011 -18.99513 -18.94139 -18.31499 -17.48231 -17.20940 -16.29670 -16.20271 -15.72038 -15.52068 -14.80656 -14.54177 -14.33964 -13.89704 -13.81687 -13.65887 -13.34581 -13.30212 -13.18898 -13.03857 -12.73019 -12.61332 -12.30101 -11.80897 -11.73448 -11.61668 -11.47331 -11.26518 -10.95404 -10.71767 -10.46178 -8.24979 -6.29057 -0.74678 0.02390 0.68827 1.41672 1.42677 1.53824 1.88615 2.16537 2.40620 2.50364 2.91205 3.11547 3.14394 3.48010 3.85365 3.99450 4.18964 4.27749 4.41403 4.44426 4.51689 4.63942 4.67075 4.94428 5.05528 5.10053 5.13212 5.56890 5.64338 5.71187 6.03653 6.32988 6.80313 6.96616 7.35708 8.91847 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.004774 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.037351 B = 5863.190293 C = 6520.605845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.095 3.905 3 N -0.388 5.388 4 O 0.101 5.899 5 C 0.104 3.896 6 C -0.808 4.808 7 S 2.753 3.247 8 O -0.972 6.972 9 O -0.975 6.975 10 N -1.104 6.104 11 C 0.108 3.892 12 C -0.103 4.103 13 C -0.016 4.016 14 C -0.531 4.531 15 H 0.032 0.968 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.235 1.235 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.279 0.721 26 H 0.429 0.571 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.027 0.973 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.059 6.898 -13.634 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.066 4.066 3 N -0.097 5.097 4 O 0.044 5.956 5 C 0.019 3.981 6 C -0.896 4.896 7 S 2.838 3.162 8 O -0.962 6.962 9 O -0.964 6.964 10 N -0.867 5.867 11 C -0.017 4.017 12 C -0.143 4.143 13 C -0.054 4.054 14 C -0.569 4.569 15 H 0.050 0.950 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.217 1.217 21 H -0.158 1.158 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.295 0.705 26 H 0.267 0.733 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.834 7.839 -14.340 23.462 hybrid contribution -0.580 -0.178 0.837 1.033 sum 16.254 7.661 -13.504 22.478 Atomic orbital electron populations 1.20982 0.84473 1.06453 1.05820 1.23497 0.99629 0.86244 0.97264 1.73857 0.89689 1.24518 1.21654 1.84850 1.21470 1.23871 1.65430 1.26956 1.00559 0.82856 0.87703 1.33226 1.01819 1.26406 1.28159 1.00092 0.72334 0.71473 0.72292 1.93567 1.46747 1.69157 1.86716 1.93574 1.61348 1.85189 1.56339 1.55241 1.32650 1.59637 1.39220 1.21793 0.83251 0.96843 0.99852 1.21515 0.96451 0.99659 0.96631 1.19548 0.94062 0.96576 0.95264 1.21527 1.04257 1.15322 1.15805 0.95008 1.26057 0.98047 1.00116 0.95357 1.70079 1.17736 1.43583 1.28256 0.85694 0.79179 0.79690 0.78340 1.19287 1.21691 1.15801 0.87397 0.88230 0.88089 0.70527 0.73344 0.90163 0.89555 0.92281 0.91814 0.95165 0.95512 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.75 71.24 0.62 -1.73 16 2 C 0.10 2.10 7.31 43.58 0.32 2.42 16 3 N -0.39 -9.08 12.07 -49.56 -0.60 -9.68 16 4 O 0.10 1.87 11.20 71.62 0.80 2.67 16 5 C 0.10 1.44 12.05 67.17 0.81 2.25 16 6 C -0.81 -15.56 6.35 22.40 0.14 -15.41 16 7 S 2.75 58.57 5.84 -56.49 -0.33 58.24 16 8 O -0.97 -22.63 17.84 -128.00 -2.28 -24.92 16 9 O -0.97 -26.73 16.59 -128.00 -2.12 -28.85 16 10 N -1.10 -22.82 6.00 -187.48 -1.12 -23.94 16 11 C 0.11 2.65 4.93 86.38 0.43 3.08 16 12 C -0.10 -3.39 5.29 30.59 0.16 -3.23 16 13 C -0.02 -0.68 4.04 29.85 0.12 -0.56 16 14 C -0.53 -29.14 9.66 25.60 0.25 -28.89 16 15 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 16 C 0.00 0.03 5.47 84.66 0.46 0.49 16 17 N -0.96 -59.07 13.96 21.45 0.30 -58.77 16 18 Si 0.95 42.17 27.47 68.60 1.88 44.06 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 22 H 0.11 1.93 6.24 -2.38 -0.01 1.92 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.10 1.96 6.45 -2.39 -0.02 1.94 16 25 H 0.28 0.96 8.06 -2.91 -0.02 0.94 16 26 H 0.43 7.49 8.65 -96.75 -0.84 6.66 16 27 H 0.08 1.72 5.69 -2.39 -0.01 1.70 16 28 H 0.09 2.05 7.04 -2.38 -0.02 2.03 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.03 1.19 7.20 -2.39 -0.02 1.18 16 32 H 0.03 1.07 7.57 -2.38 -0.02 1.05 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -74.98 293.20 0.09 -74.89 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.26 Total: 7.90 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.31 Total: -41.60 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -1.42 Total: -92.39 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -3.61 Total: -51.10 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.06 kcal Atomic # 16 Polarization: 58.57 SS G_CDS: -0.33 Total: 58.24 kcal Total: -74.98 0.09 -74.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.879 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds