Wall clock time and date at job start Mon Mar 30 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47006 * 2 1 4 4 H 1.09002 * 109.46967 * 304.88375 * 3 2 1 5 5 C 1.50701 * 109.47147 * 184.88095 * 3 2 1 6 6 H 1.08004 * 119.99890 * 239.99551 * 5 3 2 7 7 C 1.37878 * 119.99931 * 59.99824 * 5 3 2 8 8 N 1.31515 * 119.99788 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99809 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47228 * 60.00550 * 9 7 5 11 11 H 1.48507 * 109.47160 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47492 * 299.99989 * 9 7 5 13 13 N 1.46499 * 109.47083 * 64.87832 * 3 2 1 14 14 S 1.65605 * 120.00191 * 240.56899 * 13 3 2 15 15 O 1.42101 * 106.39782 * 50.41935 * 14 13 3 16 16 O 1.42097 * 106.40162 * 183.33416 * 14 13 3 17 17 C 1.76193 * 107.21971 * 296.87844 * 14 13 3 18 18 C 1.35454 * 128.00794 * 114.68880 * 17 14 13 19 19 O 1.34044 * 106.44548 * 179.91169 * 18 17 14 20 20 N 1.20928 * 111.56790 * 0.37947 * 19 18 17 21 21 C 1.30174 * 111.60447 * 359.76270 * 20 19 18 22 22 C 1.50692 * 126.80514 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47500 * 296.85483 * 1 2 3 24 24 H 1.09001 * 109.46665 * 176.85441 * 1 2 3 25 25 H 1.08994 * 109.47058 * 56.85953 * 1 2 3 26 26 H 1.09006 * 109.46989 * 119.99724 * 2 1 3 27 27 H 1.08994 * 109.47256 * 239.99512 * 2 1 3 28 28 H 0.97003 * 119.99757 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99787 * 60.57810 * 13 3 2 30 30 H 1.07993 * 126.77544 * 0.02562 * 18 17 14 31 31 H 1.09001 * 109.47423 * 274.70024 * 22 21 20 32 32 H 1.09006 * 109.47027 * 34.69104 * 22 21 20 33 33 H 1.08998 * 109.47913 * 154.69231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9809 -0.8430 5 6 3.5421 1.4443 -0.1209 6 1 4.1459 1.8895 0.6561 7 6 4.1457 0.8776 -1.2235 8 7 3.4104 0.3360 -2.1698 9 14 6.0075 0.8804 -1.3736 10 1 6.5979 0.1472 -0.2251 11 1 6.4030 0.2149 -2.6409 12 1 6.5021 2.2806 -1.3740 13 7 1.6499 2.0983 1.2506 14 16 0.6786 3.4392 1.2145 15 8 -0.4341 3.1066 0.3956 16 8 0.5499 3.8777 2.5599 17 6 1.5639 4.7018 0.3621 18 6 1.2581 5.2792 -0.8244 19 8 2.2181 6.1832 -1.0651 20 7 3.0429 6.2019 -0.1810 21 6 2.7614 5.3425 0.7553 22 6 3.5544 5.0823 2.0100 23 1 -0.3634 0.4642 0.9168 24 1 -0.3633 -1.0262 -0.0564 25 1 -0.3633 0.5618 -0.8605 26 1 1.8933 -0.5138 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.8350 -0.0624 -2.9457 29 1 1.9606 1.7473 2.0998 30 1 0.4077 5.0565 -1.4516 31 1 4.3459 4.3637 1.7973 32 1 3.9956 6.0153 2.3610 33 1 2.8956 4.6800 2.7795 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601392725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:56 Heat of formation + Delta-G solvation = -26.064276 kcal Electronic energy + Delta-G solvation = -20318.917344 eV Core-core repulsion = 17088.976673 eV Total energy + Delta-G solvation = -3229.940671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.80967 -36.84409 -35.98139 -35.43308 -34.68543 -32.30761 -31.77588 -30.60130 -28.55070 -26.72376 -23.76068 -23.06922 -21.31141 -20.18866 -19.20793 -18.02198 -17.54157 -17.13347 -16.37936 -16.04476 -15.39118 -14.80845 -14.22992 -13.77719 -13.21131 -13.16012 -13.03354 -12.96564 -12.40818 -11.88278 -11.81181 -11.65844 -11.59594 -11.54675 -11.28380 -11.03572 -10.87093 -10.84781 -10.41383 -10.22668 -10.03877 -9.74701 -9.60060 -9.56749 -8.58438 -8.33761 -6.20004 -4.29369 0.89766 1.37595 2.13307 3.20337 3.25893 3.26523 3.29908 3.64947 4.06980 4.28567 4.31349 4.53877 4.86122 5.10058 5.37680 5.46356 5.67294 5.73595 5.87173 6.16774 6.22951 6.29607 6.32122 6.59198 6.84749 7.05173 7.17593 7.52361 7.60228 7.77865 7.93192 8.18067 8.29187 8.73717 9.38047 10.84162 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.009716 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.344216 B = 2881.125349 C = 3857.019475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.045 0.955 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.894 3.106 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.277 1.277 13 N -1.094 6.094 14 S 2.722 3.278 15 O -0.959 6.959 16 O -0.976 6.976 17 C -0.772 4.772 18 C 0.076 3.924 19 O 0.096 5.904 20 N -0.371 5.371 21 C 0.114 3.886 22 C -0.097 4.097 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.104 0.896 28 H 0.266 0.734 29 H 0.410 0.590 30 H 0.232 0.768 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 5.534 4.028 7.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.177 3.823 4 H 0.063 0.937 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.856 5.856 14 S 2.805 3.195 15 O -0.949 6.949 16 O -0.966 6.966 17 C -0.859 4.859 18 C -0.008 4.008 19 O 0.039 5.961 20 N -0.080 5.080 21 C -0.048 4.048 22 C -0.154 4.154 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.244 0.756 30 H 0.248 0.752 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.085 6.554 3.747 8.156 hybrid contribution 1.270 -0.548 -0.077 1.385 sum -1.815 6.007 3.670 7.269 Atomic orbital electron populations 1.21823 0.98472 0.99287 1.00863 1.21898 0.92452 0.99302 1.03016 1.18582 0.94741 0.90233 0.78751 0.93717 1.21398 0.91142 1.38631 1.05997 0.91917 1.24901 0.98359 0.94822 0.95537 1.69842 1.35213 1.37752 1.09444 0.86621 0.85318 0.78347 0.77559 1.20058 1.21124 1.20295 1.55451 1.70654 1.42847 1.16675 1.01060 0.73346 0.72415 0.72659 1.93578 1.47904 1.82845 1.70599 1.93528 1.86274 1.82289 1.34536 1.33356 1.14196 1.26290 1.12026 1.26027 0.93486 0.87177 0.94137 1.84810 1.26334 1.46935 1.38064 1.73747 1.12206 1.22607 0.99437 1.23018 0.92521 0.91926 0.97310 1.20495 1.00061 1.03777 0.91099 0.94477 0.94758 0.92993 0.94177 0.87835 0.92445 0.75631 0.75174 0.88554 0.89964 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.47 37.16 0.35 -2.51 16 2 C -0.13 -2.74 5.45 -26.73 -0.15 -2.89 16 3 C 0.28 6.21 2.26 -69.08 -0.16 6.05 16 4 H 0.05 1.07 7.73 -51.93 -0.40 0.67 16 5 C -0.53 -12.92 8.84 -34.44 -0.30 -13.23 16 6 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.88 -23.11 11.29 55.43 0.63 -22.49 16 9 Si 0.89 20.01 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 13 N -1.09 -20.22 4.87 -5.88 -0.03 -20.25 16 14 S 2.72 48.56 5.64 -107.50 -0.61 47.95 16 15 O -0.96 -18.56 17.10 -57.17 -0.98 -19.54 16 16 O -0.98 -18.23 17.06 -57.17 -0.98 -19.21 16 17 C -0.77 -13.39 6.32 -39.38 -0.25 -13.64 16 18 C 0.08 1.16 12.05 29.74 0.36 1.52 16 19 O 0.10 1.57 11.20 17.16 0.19 1.77 16 20 N -0.37 -6.66 12.07 33.42 0.40 -6.26 16 21 C 0.11 2.00 7.33 -82.10 -0.60 1.39 16 22 C -0.10 -1.42 10.41 36.00 0.37 -1.05 16 23 H 0.04 0.68 7.73 -51.93 -0.40 0.28 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.10 2.51 5.96 -51.93 -0.31 2.20 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.41 6.67 8.96 -34.48 -0.31 6.37 16 30 H 0.23 2.53 8.06 -52.49 -0.42 2.11 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.30 7.11 -51.93 -0.37 0.93 16 LS Contribution 299.89 15.07 4.52 4.52 Total: -1.00 -29.89 299.89 -6.21 -36.09 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.87 Total: 5.18 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.47 Total: -22.75 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 1.00 Total: -49.00 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.76 Total: -36.97 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 48.56 SS G_CDS: -0.61 Total: 47.95 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.89 -6.21 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601392725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.027 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds