Wall clock time and date at job start Mon Mar 30 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45204 * 109.47450 * 2 1 4 4 C 1.34629 * 117.00063 * 180.02562 * 3 2 1 5 5 O 1.21505 * 120.00432 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99524 * 180.02562 * 4 3 2 7 7 C 1.47309 * 122.25490 * 0.06117 * 6 4 3 8 8 S 1.84078 * 102.62004 * 155.26435 * 7 6 4 9 9 C 1.84208 * 93.91043 * 33.34986 * 8 7 6 10 10 C 1.45508 * 122.42761 * 179.97438 * 6 4 3 11 11 H 1.08998 * 108.75481 * 301.88243 * 10 6 4 12 12 C 1.50706 * 108.75202 * 60.10472 * 10 6 4 13 13 O 1.21292 * 120.00254 * 2.44503 * 12 10 6 14 14 N 1.34777 * 119.99766 * 182.44226 * 12 10 6 15 15 C 1.37095 * 119.99970 * 179.97438 * 14 12 10 16 16 H 1.07999 * 119.99992 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99671 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99798 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00536 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00539 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00289 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00000 * 19 17 15 23 23 H 1.08991 * 109.47211 * 59.99573 * 1 2 3 24 24 H 1.09001 * 109.47081 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46544 * 299.99770 * 1 2 3 26 26 H 1.09007 * 109.47064 * 240.00289 * 2 1 3 27 27 H 1.08996 * 109.47639 * 120.00197 * 2 1 3 28 28 H 1.09001 * 110.86145 * 36.94649 * 7 6 4 29 29 H 1.09001 * 110.87378 * 273.58254 * 7 6 4 30 30 H 1.08995 * 111.05052 * 209.73112 * 9 8 7 31 31 H 1.08993 * 111.08699 * 85.76865 * 9 8 7 32 32 H 0.97004 * 119.99528 * 0.02562 * 14 12 10 33 33 H 0.96996 * 120.00340 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 3.0132 3.9934 0.0024 8 16 4.1139 5.2632 0.7537 9 6 5.6469 4.5477 0.0247 10 6 5.2970 3.0424 0.0000 11 1 5.7365 2.5658 0.8761 12 6 5.8971 2.4262 -1.2375 13 8 5.1822 1.8791 -2.0504 14 7 7.2283 2.4830 -1.4409 15 6 7.7743 1.9220 -2.5664 16 1 7.1377 1.4348 -3.2902 17 6 9.1467 1.9802 -2.7758 18 7 9.6700 1.4428 -3.8548 19 14 10.2477 2.8234 -1.5243 20 1 10.3840 4.2602 -1.8735 21 1 9.6468 2.6974 -0.1721 22 1 11.5873 2.1827 -1.5323 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 2.1253 3.8396 0.6158 29 1 2.7354 4.2747 -1.0134 30 1 6.5097 4.7384 0.6628 31 1 5.8162 4.9273 -0.9828 32 1 7.8000 2.9203 -0.7906 33 1 10.6280 1.4837 -4.0013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931297761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:35 Heat of formation + Delta-G solvation = -92.201102 kcal Electronic energy + Delta-G solvation = -19660.303833 eV Core-core repulsion = 16427.495254 eV Total energy + Delta-G solvation = -3232.808579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50203 -38.79013 -36.69796 -35.60091 -34.02663 -32.21212 -31.65093 -30.67789 -27.36349 -25.33155 -24.17469 -22.69770 -20.97489 -19.36383 -18.76042 -17.95416 -17.24903 -16.94148 -16.05556 -16.01518 -15.02866 -14.67788 -14.44593 -14.19940 -13.70706 -13.51637 -13.35273 -13.03008 -12.80957 -12.60348 -12.31665 -12.16008 -12.03350 -11.70592 -11.58044 -11.23174 -10.86143 -10.61855 -10.38863 -10.21245 -10.00804 -9.62949 -9.11737 -8.38335 -8.24351 -7.98772 -6.35406 -3.87195 1.51390 1.86236 2.03639 2.99289 3.02198 3.11788 3.14606 3.51743 3.76389 4.06023 4.42108 4.45884 4.90031 4.92818 4.95418 5.02483 5.21811 5.24401 5.28326 5.36188 5.44135 5.63633 5.73081 5.74988 5.86269 6.16493 6.43507 7.33056 7.49334 8.05955 8.45980 8.55241 8.88660 9.34379 9.70798 10.77398 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.006071 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.442543 B = 4611.188327 C = 5679.298666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 O -0.372 6.372 4 C 0.673 3.327 5 O -0.539 6.539 6 N -0.579 5.579 7 C 0.166 3.834 8 S -0.273 6.273 9 C -0.063 4.063 10 C 0.137 3.863 11 H 0.104 0.896 12 C 0.445 3.555 13 O -0.552 6.552 14 N -0.581 5.581 15 C -0.304 4.304 16 H 0.120 0.880 17 C 0.044 3.956 18 N -0.877 5.877 19 Si 0.877 3.123 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.275 1.275 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.370 0.630 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 5.418 11.278 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.007 3.993 3 O -0.287 6.287 4 C 0.426 3.574 5 O -0.424 6.424 6 N -0.321 5.321 7 C -0.068 4.068 8 S -0.046 6.046 9 C -0.212 4.212 10 C 0.028 3.972 11 H 0.122 0.878 12 C 0.227 3.773 13 O -0.433 6.433 14 N -0.220 5.220 15 C -0.432 4.432 16 H 0.137 0.863 17 C -0.160 4.160 18 N -0.517 5.517 19 Si 0.703 3.297 20 H -0.194 1.194 21 H -0.194 1.194 22 H -0.200 1.200 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.131 0.869 32 H 0.203 0.797 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.226 5.569 11.315 18.275 hybrid contribution 1.319 -0.401 0.101 1.382 sum -11.907 5.167 11.416 17.286 Atomic orbital electron populations 1.21812 0.92732 1.02892 1.03322 1.22928 0.94473 0.78843 1.03008 1.86156 1.21989 1.33175 1.87397 1.17322 0.81101 0.82807 0.76201 1.91047 1.59517 1.38492 1.53342 1.46438 1.04750 1.03117 1.77837 1.24123 0.95129 0.83753 1.03770 1.88150 1.06060 1.41819 1.68605 1.24652 0.97836 0.92884 1.05858 1.21031 0.80000 0.95229 1.00918 0.87785 1.19626 0.83212 0.86139 0.88278 1.90583 1.59827 1.46647 1.46197 1.42107 1.05625 1.52214 1.22046 1.19415 0.92292 1.33359 0.98149 0.86256 1.25033 0.96568 0.97513 0.96848 1.69616 1.12871 1.43497 1.25717 0.86708 0.81429 0.80395 0.81173 1.19399 1.19359 1.19990 0.91467 0.90123 0.91690 0.90880 0.91318 0.86327 0.88460 0.85271 0.86895 0.79690 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.08 1.05 6.19 37.16 0.23 1.28 16 3 O -0.37 -5.81 9.44 -40.30 -0.38 -6.19 16 4 C 0.67 12.82 7.49 54.06 0.41 13.23 16 5 O -0.54 -12.34 14.88 -25.62 -0.38 -12.72 16 6 N -0.58 -9.89 2.74 -175.17 -0.48 -10.37 16 7 C 0.17 2.18 7.41 60.29 0.45 2.62 16 8 S -0.27 -3.43 23.43 -107.50 -2.52 -5.95 16 9 C -0.06 -0.85 6.79 37.98 0.26 -0.60 16 10 C 0.14 2.38 2.86 -68.79 -0.20 2.18 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.44 10.26 6.32 -10.98 -0.07 10.19 16 13 O -0.55 -15.23 14.30 -12.90 -0.18 -15.41 16 14 N -0.58 -13.72 4.97 -10.96 -0.05 -13.77 16 15 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 16 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 17 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 18 N -0.88 -25.49 13.96 55.50 0.77 -24.72 16 19 Si 0.88 18.95 27.74 -169.99 -4.72 14.24 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.30 7.85 -51.93 -0.41 0.89 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.11 1.57 7.85 -51.93 -0.41 1.17 16 32 H 0.37 7.53 5.61 -40.82 -0.23 7.30 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -35.15 297.36 -6.23 -41.39 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.98 Total: 8.65 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 1.21 Total: 20.37 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.24 Total: -48.86 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.95 Total: -34.32 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.72 Total: 14.24 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.52 Total: -5.95 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.15 -6.23 -41.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.815 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds