Wall clock time and date at job start Mon Mar 30 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45204 * 109.47450 * 2 1 4 4 C 1.34629 * 117.00063 * 180.02562 * 3 2 1 5 5 O 1.21505 * 120.00432 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99524 * 180.02562 * 4 3 2 7 7 C 1.47309 * 122.25490 * 0.06117 * 6 4 3 8 8 S 1.84078 * 102.62004 * 155.26435 * 7 6 4 9 9 C 1.84208 * 93.91043 * 33.34986 * 8 7 6 10 10 C 1.45508 * 122.42761 * 179.97438 * 6 4 3 11 11 H 1.08998 * 108.75481 * 301.88243 * 10 6 4 12 12 C 1.50706 * 108.75202 * 60.10472 * 10 6 4 13 13 O 1.21292 * 120.00254 * 2.44503 * 12 10 6 14 14 N 1.34777 * 119.99766 * 182.44226 * 12 10 6 15 15 C 1.37095 * 119.99970 * 179.97438 * 14 12 10 16 16 H 1.07999 * 119.99992 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99671 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99798 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00536 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00539 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00289 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00000 * 19 17 15 23 23 H 1.08991 * 109.47211 * 59.99573 * 1 2 3 24 24 H 1.09001 * 109.47081 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46544 * 299.99770 * 1 2 3 26 26 H 1.09007 * 109.47064 * 240.00289 * 2 1 3 27 27 H 1.08996 * 109.47639 * 120.00197 * 2 1 3 28 28 H 1.09001 * 110.86145 * 36.94649 * 7 6 4 29 29 H 1.09001 * 110.87378 * 273.58254 * 7 6 4 30 30 H 1.08995 * 111.05052 * 209.73112 * 9 8 7 31 31 H 1.08993 * 111.08699 * 85.76865 * 9 8 7 32 32 H 0.97004 * 119.99528 * 0.02562 * 14 12 10 33 33 H 0.96996 * 120.00340 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 3.0132 3.9934 0.0024 8 16 4.1139 5.2632 0.7537 9 6 5.6469 4.5477 0.0247 10 6 5.2970 3.0424 0.0000 11 1 5.7365 2.5658 0.8761 12 6 5.8971 2.4262 -1.2375 13 8 5.1822 1.8791 -2.0504 14 7 7.2283 2.4830 -1.4409 15 6 7.7743 1.9220 -2.5664 16 1 7.1377 1.4348 -3.2902 17 6 9.1467 1.9802 -2.7758 18 7 9.6700 1.4428 -3.8548 19 14 10.2477 2.8234 -1.5243 20 1 10.3840 4.2602 -1.8735 21 1 9.6468 2.6974 -0.1721 22 1 11.5873 2.1827 -1.5323 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 2.1253 3.8396 0.6158 29 1 2.7354 4.2747 -1.0134 30 1 6.5097 4.7384 0.6628 31 1 5.8162 4.9273 -0.9828 32 1 7.8000 2.9203 -0.7906 33 1 10.6280 1.4837 -4.0013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:35 Heat of formation + Delta-G solvation = -118.635487 kcal Electronic energy + Delta-G solvation = -19661.450114 eV Core-core repulsion = 16427.495254 eV Total energy + Delta-G solvation = -3233.954860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.94597 -40.44768 -38.15914 -37.07859 -36.05948 -33.99414 -32.95918 -31.90223 -28.57131 -27.18535 -25.48018 -23.85609 -22.46040 -21.20491 -20.43816 -19.38812 -18.62852 -18.44445 -17.48645 -17.24618 -16.81438 -16.13944 -15.80581 -15.59279 -15.16650 -14.83790 -14.71354 -14.62656 -14.26839 -14.04537 -13.57797 -13.38407 -13.14257 -12.98242 -12.83261 -12.55089 -12.45927 -12.17316 -11.97829 -11.66225 -11.57338 -11.52846 -10.68106 -10.30266 -10.01149 -8.96162 -8.44249 -6.06714 0.47529 0.74033 0.81065 1.29964 1.34658 1.44858 1.67397 1.80674 2.22082 2.50645 2.84218 3.01703 3.25591 3.73779 3.97460 3.99283 4.01998 4.09593 4.22959 4.32520 4.34729 4.43748 4.64933 4.90426 4.92336 5.08338 5.30758 5.48965 5.87303 5.95410 6.50570 6.80031 7.07963 7.28954 7.83278 8.73244 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.006071 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.442543 B = 4611.188327 C = 5679.298666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 O -0.363 6.363 4 C 0.666 3.334 5 O -0.589 6.589 6 N -0.582 5.582 7 C 0.155 3.845 8 S -0.233 6.233 9 C -0.064 4.064 10 C 0.143 3.857 11 H 0.120 0.880 12 C 0.443 3.557 13 O -0.606 6.606 14 N -0.577 5.577 15 C -0.329 4.329 16 H 0.051 0.949 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.961 3.039 20 H -0.246 1.246 21 H -0.229 1.229 22 H -0.275 1.275 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.107 0.893 32 H 0.391 0.609 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 7.947 14.488 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.002 4.002 3 O -0.277 6.277 4 C 0.420 3.580 5 O -0.478 6.478 6 N -0.324 5.324 7 C -0.077 4.077 8 S -0.006 6.006 9 C -0.213 4.213 10 C 0.034 3.966 11 H 0.138 0.862 12 C 0.228 3.772 13 O -0.490 6.490 14 N -0.218 5.218 15 C -0.458 4.458 16 H 0.069 0.931 17 C -0.210 4.210 18 N -0.571 5.571 19 Si 0.780 3.220 20 H -0.170 1.170 21 H -0.153 1.153 22 H -0.201 1.201 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.117 0.883 30 H 0.187 0.813 31 H 0.126 0.874 32 H 0.227 0.773 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.405 8.145 14.548 21.393 hybrid contribution 1.208 -1.260 -0.991 2.007 sum -12.197 6.885 13.557 19.492 Atomic orbital electron populations 1.21823 0.89022 1.04701 1.04019 1.23280 0.97216 0.77591 1.02160 1.86188 1.19974 1.34750 1.86819 1.17684 0.81813 0.82986 0.75537 1.91005 1.60826 1.40307 1.55633 1.46638 1.05239 1.03692 1.76816 1.24389 0.95851 0.82617 1.04830 1.88082 1.04261 1.40462 1.67780 1.24712 1.00051 0.89548 1.06993 1.21084 0.80108 0.97825 0.97539 0.86200 1.20791 0.82686 0.84440 0.89262 1.90557 1.61141 1.48556 1.48714 1.41853 1.06262 1.52390 1.21266 1.18938 0.92521 1.35121 0.99265 0.93122 1.26150 0.97791 0.97629 0.99479 1.69803 1.13771 1.45052 1.28523 0.85425 0.77927 0.79563 0.79067 1.16979 1.15265 1.20057 0.91426 0.87728 0.90233 0.93114 0.90974 0.83879 0.88290 0.81304 0.87415 0.77256 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.29 71.98 0.74 -1.43 16 2 C 0.07 1.84 6.19 71.98 0.45 2.29 16 3 O -0.36 -11.25 9.44 -55.39 -0.52 -11.77 16 4 C 0.67 25.63 7.49 129.79 0.97 26.60 16 5 O -0.59 -27.92 14.88 25.89 0.39 -27.53 16 6 N -0.58 -19.31 2.74 -938.51 -2.57 -21.88 16 7 C 0.16 3.72 7.41 127.61 0.95 4.67 16 8 S -0.23 -4.96 23.43 -56.49 -1.32 -6.28 16 9 C -0.06 -1.51 6.79 72.51 0.49 -1.01 16 10 C 0.14 4.75 2.86 44.96 0.13 4.88 16 11 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 12 C 0.44 20.81 6.32 87.66 0.55 21.36 16 13 O -0.61 -35.27 14.30 14.57 0.21 -35.06 16 14 N -0.58 -27.34 4.97 -306.98 -1.53 -28.86 16 15 C -0.33 -19.48 10.16 84.04 0.85 -18.62 16 16 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 17 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 18 N -0.93 -56.21 13.96 21.66 0.30 -55.91 16 19 Si 0.96 37.72 27.74 68.60 1.90 39.62 16 20 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 21 H -0.23 -7.51 6.52 99.48 0.65 -6.87 16 22 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.04 8.14 -2.38 -0.02 1.03 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.14 2.71 7.85 -2.39 -0.02 2.69 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.17 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.11 2.70 7.85 -2.39 -0.02 2.68 16 32 H 0.39 14.95 5.61 -92.71 -0.52 14.43 16 33 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.13 297.36 3.01 -81.12 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.56 Total: 27.99 kcal Atomic # 6 Polarization: 32.97 SS G_CDS: 5.60 Total: 38.57 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.80 Total: -106.65 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: 0.07 Total: -74.37 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.90 Total: 39.62 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -1.32 Total: -6.28 kcal Total: -84.13 3.01 -81.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.517 kcal (2) G-P(sol) polarization free energy of solvation -84.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds