Wall clock time and date at job start Mon Mar 30 2020 01:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 S 1.81402 * 109.47354 * 269.98255 * 7 6 5 9 9 O 1.42102 * 108.57532 * 294.48626 * 8 7 6 10 10 O 1.42096 * 108.57805 * 65.51034 * 8 7 6 11 11 C 1.81393 * 101.92212 * 180.02562 * 8 7 6 12 12 C 1.52996 * 109.47305 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47512 * 179.97438 * 12 11 8 14 14 H 1.08008 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00427 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99496 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47329 * 59.99372 * 17 15 13 19 19 H 1.48502 * 109.47220 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46903 * 299.99650 * 17 15 13 21 21 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 22 22 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 23 23 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 24 24 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 26 26 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 27 27 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 28 28 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 29 29 H 1.09006 * 109.47006 * 300.00016 * 11 8 7 30 30 H 1.08997 * 109.47684 * 59.99588 * 11 8 7 31 31 H 1.08994 * 109.47204 * 299.99643 * 12 11 8 32 32 H 1.08999 * 109.47080 * 59.99841 * 12 11 8 33 33 H 0.97001 * 119.99659 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 16 1.6868 5.5712 -1.7650 9 8 0.7831 4.8518 -2.5928 10 8 1.2241 6.1035 -0.5314 11 6 2.4153 6.9169 -2.7390 12 6 1.3248 7.9215 -3.1166 13 6 1.9301 9.0398 -3.9252 14 1 2.9870 9.0344 -4.1480 15 6 1.1349 10.0700 -4.3807 16 7 -0.1519 10.0768 -4.1090 17 14 1.8851 11.4558 -5.3837 18 1 2.4941 10.8997 -6.6185 19 1 0.8269 12.4316 -5.7490 20 1 2.9309 12.1384 -4.5801 21 7 2.3032 2.1694 -1.0841 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8932 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8763 5.0936 -0.8849 28 1 3.5563 4.1849 -2.3816 29 1 3.1829 7.4180 -2.1492 30 1 2.8623 6.5088 -3.6454 31 1 0.5576 7.4202 -3.7065 32 1 0.8774 8.3298 -2.2104 33 1 -0.7114 10.8013 -4.4298 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116744473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:06 Heat of formation + Delta-G solvation = -12.462642 kcal Electronic energy + Delta-G solvation = -18749.693132 eV Core-core repulsion = 15520.342273 eV Total energy + Delta-G solvation = -3229.350860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.82711 -36.73311 -36.57533 -35.75378 -34.60824 -33.96768 -32.23197 -31.28435 -29.48517 -25.72269 -25.33271 -23.59886 -21.94321 -21.19490 -18.82422 -18.33230 -17.72275 -16.99540 -16.21638 -15.90523 -15.78566 -15.07323 -14.82091 -14.56941 -14.21441 -13.79103 -13.48670 -13.21988 -12.57215 -12.52152 -12.01061 -11.95965 -11.84605 -11.75760 -11.69748 -11.54682 -11.20780 -11.13478 -11.10709 -11.03068 -10.48969 -10.43692 -10.02557 -9.74385 -9.24169 -8.53581 -6.15934 -4.22622 -0.04915 0.97539 2.00085 2.32165 2.95655 3.25005 3.25306 3.30642 3.31892 3.70100 3.94226 4.15273 4.33302 4.45437 4.70523 4.86172 4.90887 4.92000 5.18250 5.19251 5.47791 5.48783 5.53424 5.54093 5.62016 5.75137 5.91760 6.34975 7.26862 7.31627 7.75812 7.90093 8.10712 8.80607 9.42373 10.94797 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.048366 B = 0.003677 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.781636 B = 7612.563202 C = 7787.180047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.031 4.031 3 C 0.171 3.829 4 N -0.377 5.377 5 O 0.090 5.910 6 C 0.189 3.811 7 C -0.544 4.544 8 S 2.394 3.606 9 O -0.920 6.920 10 O -0.927 6.927 11 C -0.559 4.559 12 C 0.028 3.972 13 C -0.524 4.524 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.459 5.459 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 -15.824 6.280 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.070 4.070 3 C -0.102 4.102 4 N -0.084 5.084 5 O 0.030 5.970 6 C -0.032 4.032 7 C -0.666 4.666 8 S 2.574 3.426 9 O -0.917 6.917 10 O -0.923 6.923 11 C -0.693 4.693 12 C -0.011 4.011 13 C -0.564 4.564 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.526 5.526 17 Si 0.729 3.271 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.194 5.194 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.184 0.816 28 H 0.190 0.810 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.095 -16.563 7.098 19.023 hybrid contribution 1.401 1.020 -0.800 1.909 sum 7.496 -15.544 6.298 18.370 Atomic orbital electron populations 1.21782 0.93000 1.02953 1.03240 1.19974 0.97123 0.85183 1.04754 1.26002 1.00225 1.00713 0.83244 1.74635 1.17363 0.92640 1.23740 1.85343 1.60455 1.27266 1.23937 1.27147 0.97817 0.95785 0.82444 1.29493 1.25483 1.04492 1.07149 1.09438 0.77503 0.78202 0.77488 1.93595 1.57396 1.72341 1.68405 1.93589 1.76839 1.77743 1.44177 1.30190 1.12820 1.13878 1.12441 1.19038 0.91194 0.92300 0.98594 1.20953 0.95119 1.06030 1.34260 0.91908 1.25066 0.94878 0.98303 0.96157 1.69947 1.04559 1.32947 1.45148 0.86508 0.78799 0.81429 0.80399 1.20033 1.21074 1.20042 1.71957 1.16916 1.01268 1.29243 0.92156 0.91495 0.90876 0.88352 0.88957 0.81558 0.80976 0.85487 0.85473 0.94390 0.94399 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.03 -0.30 6.56 -27.88 -0.18 -0.48 16 3 C 0.17 2.34 7.47 -156.37 -1.17 1.17 16 4 N -0.38 -5.59 12.16 30.90 0.38 -5.21 16 5 O 0.09 1.33 11.31 18.11 0.20 1.54 16 6 C 0.19 2.67 7.77 -13.05 -0.10 2.57 16 7 C -0.54 -5.81 6.43 36.00 0.23 -5.57 16 8 S 2.39 38.35 4.70 -107.50 -0.51 37.84 16 9 O -0.92 -18.10 18.10 -57.83 -1.05 -19.14 16 10 O -0.93 -17.93 18.10 -57.83 -1.05 -18.97 16 11 C -0.56 -9.21 5.74 37.16 0.21 -8.99 16 12 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 13 C -0.52 -13.79 9.11 -34.44 -0.31 -14.10 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 17 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 N -0.46 -6.87 11.55 -9.87 -0.11 -6.99 16 22 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.17 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.17 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -36.14 309.09 -7.14 -43.28 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.19 Total: -3.11 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -1.19 Total: -24.35 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 1.00 Total: -37.26 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.89 Total: -36.58 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 38.35 SS G_CDS: -0.51 Total: 37.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.14 -7.14 -43.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116744473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.821 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds