Wall clock time and date at job start Mon Mar 30 2020 01:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 S 1.81402 * 109.47354 * 269.98255 * 7 6 5 9 9 O 1.42102 * 108.57532 * 294.48626 * 8 7 6 10 10 O 1.42096 * 108.57805 * 65.51034 * 8 7 6 11 11 C 1.81393 * 101.92212 * 180.02562 * 8 7 6 12 12 C 1.52996 * 109.47305 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47512 * 179.97438 * 12 11 8 14 14 H 1.08008 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00427 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99496 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47329 * 59.99372 * 17 15 13 19 19 H 1.48502 * 109.47220 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46903 * 299.99650 * 17 15 13 21 21 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 22 22 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 23 23 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 24 24 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 26 26 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 27 27 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 28 28 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 29 29 H 1.09006 * 109.47006 * 300.00016 * 11 8 7 30 30 H 1.08997 * 109.47684 * 59.99588 * 11 8 7 31 31 H 1.08994 * 109.47204 * 299.99643 * 12 11 8 32 32 H 1.08999 * 109.47080 * 59.99841 * 12 11 8 33 33 H 0.97001 * 119.99659 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 16 1.6868 5.5712 -1.7650 9 8 0.7831 4.8518 -2.5928 10 8 1.2241 6.1035 -0.5314 11 6 2.4153 6.9169 -2.7390 12 6 1.3248 7.9215 -3.1166 13 6 1.9301 9.0398 -3.9252 14 1 2.9870 9.0344 -4.1480 15 6 1.1349 10.0700 -4.3807 16 7 -0.1519 10.0768 -4.1090 17 14 1.8851 11.4558 -5.3837 18 1 2.4941 10.8997 -6.6185 19 1 0.8269 12.4316 -5.7490 20 1 2.9309 12.1384 -4.5801 21 7 2.3032 2.1694 -1.0841 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8932 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8763 5.0936 -0.8849 28 1 3.5563 4.1849 -2.3816 29 1 3.1829 7.4180 -2.1492 30 1 2.8623 6.5088 -3.6454 31 1 0.5576 7.4202 -3.7065 32 1 0.8774 8.3298 -2.2104 33 1 -0.7114 10.8013 -4.4298 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116744473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:06 Heat of formation + Delta-G solvation = -42.105834 kcal Electronic energy + Delta-G solvation = -18750.978557 eV Core-core repulsion = 15520.342273 eV Total energy + Delta-G solvation = -3230.636285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.89245 -38.11601 -37.60807 -37.15093 -35.84780 -35.56759 -33.13485 -33.07121 -30.52457 -27.56875 -26.23883 -24.66902 -23.53208 -22.32242 -20.07096 -19.50590 -18.87506 -18.67081 -17.47955 -17.26929 -17.13489 -16.48441 -16.06803 -15.78743 -15.16847 -14.99779 -14.54807 -14.40294 -14.07319 -13.70292 -13.52501 -13.19527 -13.12823 -13.04371 -12.84598 -12.73964 -12.72355 -12.48243 -12.22918 -12.14641 -12.09334 -12.06307 -11.68003 -11.20953 -10.84424 -10.58955 -8.21340 -6.35305 -1.32818 -0.08324 0.96434 1.29101 1.45683 1.48803 1.56632 1.76357 2.28443 2.42197 2.70904 2.81617 3.01702 3.13088 3.49872 3.84039 4.06995 4.07923 4.16449 4.17046 4.23744 4.40519 4.57852 4.75234 4.86012 4.86441 4.95716 5.20151 5.35586 5.36541 5.73993 6.09503 6.80286 6.83957 7.35201 8.90769 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.048366 B = 0.003677 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.781636 B = 7612.563202 C = 7787.180047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.034 4.034 3 C 0.167 3.833 4 N -0.395 5.395 5 O 0.079 5.921 6 C 0.177 3.823 7 C -0.512 4.512 8 S 2.398 3.602 9 O -0.971 6.971 10 O -0.973 6.973 11 C -0.555 4.555 12 C 0.015 3.985 13 C -0.537 4.537 14 H 0.085 0.915 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.261 1.261 21 N -0.479 5.479 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.220 0.780 28 H 0.216 0.784 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.391 -16.781 5.847 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 C -0.106 4.106 4 N -0.104 5.104 5 O 0.022 5.978 6 C -0.043 4.043 7 C -0.639 4.639 8 S 2.584 3.416 9 O -0.967 6.967 10 O -0.970 6.970 11 C -0.688 4.688 12 C -0.023 4.023 13 C -0.576 4.576 14 H 0.104 0.896 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.216 1.216 20 H -0.186 1.186 21 N -0.214 5.214 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.237 0.763 28 H 0.233 0.767 29 H 0.183 0.817 30 H 0.180 0.820 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.155 -17.468 6.650 20.813 hybrid contribution 0.469 1.184 -0.609 1.412 sum 9.624 -16.284 6.041 19.857 Atomic orbital electron populations 1.21786 0.92856 1.04456 1.01678 1.20262 0.97108 0.83173 1.06666 1.26788 0.99164 1.02005 0.82627 1.74627 1.18328 0.92964 1.24484 1.85315 1.60735 1.27426 1.24344 1.27713 0.97546 0.96543 0.82533 1.29282 1.22348 1.02468 1.09816 1.08707 0.78586 0.78222 0.76067 1.93539 1.60795 1.73095 1.69317 1.93536 1.79048 1.79070 1.45373 1.30007 1.10983 1.12835 1.14969 1.18876 0.92939 0.93889 0.96632 1.21565 0.96222 1.06268 1.33503 0.89646 1.26143 0.95225 1.01514 0.97616 1.70119 1.06417 1.34076 1.47095 0.85365 0.77921 0.77852 0.79105 1.18605 1.21598 1.18587 1.71981 1.17364 1.02032 1.30023 0.93301 0.93424 0.87861 0.86601 0.86840 0.76281 0.76712 0.81744 0.81966 0.97700 0.97615 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.03 -0.57 6.56 29.85 0.20 -0.37 16 3 C 0.17 4.35 7.47 138.47 1.03 5.39 16 4 N -0.40 -11.33 12.16 -60.33 -0.73 -12.07 16 5 O 0.08 2.24 11.31 74.87 0.85 3.09 16 6 C 0.18 4.62 7.77 88.38 0.69 5.31 16 7 C -0.51 -8.85 6.43 71.23 0.46 -8.39 16 8 S 2.40 74.93 4.70 -56.49 -0.27 74.66 16 9 O -0.97 -38.93 18.10 -127.37 -2.30 -41.24 16 10 O -0.97 -38.36 18.10 -127.37 -2.31 -40.67 16 11 C -0.55 -17.15 5.74 71.98 0.41 -16.74 16 12 C 0.02 0.75 4.98 29.85 0.15 0.90 16 13 C -0.54 -28.05 9.11 25.60 0.23 -27.82 16 14 H 0.09 3.95 7.74 -2.91 -0.02 3.93 16 15 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 16 N -0.94 -56.41 13.29 21.45 0.28 -56.13 16 17 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 N -0.48 -13.53 11.55 -303.21 -3.50 -17.04 16 22 H 0.05 0.91 8.14 -2.38 -0.02 0.90 16 23 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.22 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.22 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.16 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.16 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.00 0.25 8.14 -2.39 -0.02 0.24 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -84.36 309.09 -0.50 -84.86 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.11 Total: 4.08 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 4.35 Total: -43.43 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.95 Total: -85.23 kcal Atomic # 8 Polarization: -75.05 SS G_CDS: -3.76 Total: -78.82 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 74.93 SS G_CDS: -0.27 Total: 74.66 kcal Total: -84.36 -0.50 -84.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116744473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.749 kcal (2) G-P(sol) polarization free energy of solvation -84.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds