Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29956 * 125.30335 * 2 1 4 4 O 1.41873 * 107.41273 * 179.97438 * 3 2 1 5 5 N 1.41882 * 106.38786 * 359.78324 * 4 3 2 6 6 C 1.29950 * 107.41371 * 0.36197 * 5 4 3 7 7 C 1.50700 * 125.30070 * 179.89093 * 6 5 4 8 8 S 1.81393 * 109.47286 * 269.69863 * 7 6 5 9 9 O 1.42096 * 108.57861 * 65.51562 * 8 7 6 10 10 O 1.42105 * 108.57947 * 294.48635 * 8 7 6 11 11 C 1.81399 * 101.92117 * 180.02562 * 8 7 6 12 12 C 1.53005 * 109.47445 * 179.97438 * 11 8 7 13 13 C 1.52996 * 109.47245 * 179.97438 * 12 11 8 14 14 C 1.50703 * 109.46946 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00287 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47151 * 90.00298 * 18 16 14 20 20 H 1.48507 * 109.47197 * 210.00055 * 18 16 14 21 21 H 1.48498 * 109.47171 * 330.00226 * 18 16 14 22 22 H 1.08997 * 109.46944 * 269.99756 * 1 2 3 23 23 H 1.08991 * 109.47214 * 30.00186 * 1 2 3 24 24 H 1.09000 * 109.46992 * 150.00267 * 1 2 3 25 25 H 1.09000 * 109.46596 * 149.69762 * 7 6 5 26 26 H 1.09002 * 109.46839 * 29.70385 * 7 6 5 27 27 H 1.09001 * 109.47190 * 299.99865 * 11 8 7 28 28 H 1.09004 * 109.47089 * 59.99998 * 11 8 7 29 29 H 1.09001 * 109.46962 * 300.00183 * 12 11 8 30 30 H 1.09004 * 109.46832 * 60.00020 * 12 11 8 31 31 H 1.09001 * 109.47372 * 300.00032 * 13 12 11 32 32 H 1.09004 * 109.47108 * 60.00288 * 13 12 11 33 33 H 0.96996 * 120.00180 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0606 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0061 6 6 2.3213 -1.1499 0.0006 7 6 1.8210 -2.5714 0.0013 8 16 1.6203 -3.1426 -1.7087 9 8 2.9012 -3.1957 -2.3215 10 8 0.5886 -2.3817 -2.3220 11 6 1.0226 -4.8385 -1.4695 12 6 0.7911 -5.4946 -2.8322 13 6 0.2876 -6.9252 -2.6305 14 6 0.0602 -7.5717 -3.9727 15 1 0.2558 -7.0177 -4.8789 16 6 -0.3964 -8.8707 -4.0437 17 7 -0.6340 -9.5454 -2.9401 18 14 -0.6789 -9.6717 -5.7074 19 1 0.5671 -10.3483 -6.1490 20 1 -1.7720 -10.6708 -5.5966 21 1 -1.0563 -8.6330 -6.6992 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.8609 -2.6183 0.5151 26 1 2.5399 -3.2093 0.5155 27 1 1.7646 -5.4100 -0.9120 28 1 0.0858 -4.8184 -0.9125 29 1 0.0489 -4.9230 -3.3894 30 1 1.7277 -5.5147 -3.3895 31 1 1.0301 -7.4967 -2.0735 32 1 -0.6489 -6.9056 -2.0729 33 1 -0.9549 -10.4594 -2.9901 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119560711.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = 7.599818 kcal Electronic energy + Delta-G solvation = -18661.400881 eV Core-core repulsion = 15432.919995 eV Total energy + Delta-G solvation = -3228.480886 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89851 -37.10348 -36.15551 -35.15970 -34.78739 -33.87341 -32.28916 -29.82982 -29.05148 -27.92086 -23.95167 -22.93687 -21.35322 -20.56135 -19.05084 -17.48190 -17.31165 -16.59065 -16.32195 -16.01327 -15.76096 -14.93038 -14.75260 -14.51673 -14.44962 -13.79124 -13.67196 -13.08743 -12.72714 -12.39689 -12.24574 -12.20304 -12.16839 -12.13734 -11.99611 -11.94623 -11.37335 -11.02173 -10.97301 -10.93476 -10.72054 -10.43601 -10.03537 -9.48473 -9.21592 -8.46265 -6.11507 -4.14735 -0.43058 0.20160 1.51866 2.14536 2.52060 2.64932 3.19522 3.27451 3.33924 3.37718 3.56368 3.77295 4.03506 4.31369 4.37913 4.62034 4.72028 4.93328 4.95293 4.96489 5.00518 5.17976 5.25355 5.53791 5.70704 6.16792 6.33138 6.47189 6.76555 7.48654 7.57660 7.86128 8.25833 8.91355 9.50552 10.99632 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.048349 B = 0.003462 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.984496 B = 8086.164326 C = 8174.506488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.086 3.914 3 N -0.272 5.272 4 O 0.035 5.965 5 N -0.249 5.249 6 C 0.078 3.922 7 C -0.570 4.570 8 S 2.401 3.599 9 O -0.921 6.921 10 O -0.925 6.925 11 C -0.580 4.580 12 C -0.106 4.106 13 C 0.030 3.970 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.165 0.835 26 H 0.163 0.837 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 15.059 9.965 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 N -0.018 5.018 4 O -0.108 6.108 5 N 0.009 4.991 6 C -0.105 4.105 7 C -0.693 4.693 8 S 2.581 3.419 9 O -0.918 6.918 10 O -0.922 6.922 11 C -0.713 4.713 12 C -0.146 4.146 13 C -0.008 4.008 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.118 0.882 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.183 0.817 26 H 0.181 0.819 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.143 16.264 9.314 18.864 hybrid contribution -0.790 -1.394 0.125 1.607 sum 1.353 14.870 9.440 17.665 Atomic orbital electron populations 1.20778 0.83501 1.06874 1.05019 1.24664 1.00795 0.88346 0.95858 1.79972 0.88837 1.19258 1.13715 1.93420 1.20379 1.12788 1.84185 1.80041 1.16750 0.91765 1.10559 1.23356 0.90562 0.96505 1.00073 1.29487 1.12034 0.96994 1.30813 1.09060 0.76491 0.79906 0.76461 1.93621 1.40670 1.86672 1.70825 1.93584 1.58038 1.69631 1.70964 1.30267 1.12549 1.18148 1.10314 1.21586 1.02379 1.01034 0.89569 1.19094 0.96569 0.87476 0.97675 1.21235 1.44651 0.98081 0.92600 0.92300 1.25010 0.95288 0.97294 0.96715 1.69945 1.45633 1.10872 1.26959 0.86550 0.77943 0.79233 0.84061 1.20538 1.21155 1.19699 0.88162 0.88421 0.87563 0.81680 0.81867 0.84796 0.84722 0.91120 0.91214 0.95992 0.95952 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.05 36.01 0.36 -0.31 16 2 C 0.09 0.90 7.19 -82.38 -0.59 0.31 16 3 N -0.27 -3.45 12.98 33.74 0.44 -3.01 16 4 O 0.04 0.51 13.71 12.02 0.16 0.67 16 5 N -0.25 -3.43 12.98 33.74 0.44 -2.99 16 6 C 0.08 0.88 6.45 -82.38 -0.53 0.35 16 7 C -0.57 -4.41 5.97 36.01 0.21 -4.19 16 8 S 2.40 29.10 4.70 -107.50 -0.51 28.59 16 9 O -0.92 -15.08 18.10 -57.83 -1.05 -16.12 16 10 O -0.93 -13.07 17.30 -57.83 -1.00 -14.07 16 11 C -0.58 -7.12 5.81 37.16 0.22 -6.90 16 12 C -0.11 -1.96 5.16 -26.73 -0.14 -2.09 16 13 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 14 C -0.53 -14.26 9.11 -34.44 -0.31 -14.58 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 18 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.11 0.63 6.97 -51.93 -0.36 0.26 16 25 H 0.17 0.52 7.78 -51.92 -0.40 0.11 16 26 H 0.16 0.88 8.14 -51.92 -0.42 0.46 16 27 H 0.13 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.13 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -35.95 308.15 -6.28 -42.23 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -4.11 Total: -5.65 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -1.02 Total: -25.31 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 1.61 Total: -30.94 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.88 Total: -29.53 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 29.10 SS G_CDS: -0.51 Total: 28.59 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.95 -6.28 -42.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119560711.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.829 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds