Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29956 * 125.30335 * 2 1 4 4 O 1.41873 * 107.41273 * 179.97438 * 3 2 1 5 5 N 1.41882 * 106.38786 * 359.78324 * 4 3 2 6 6 C 1.29950 * 107.41371 * 0.36197 * 5 4 3 7 7 C 1.50700 * 125.30070 * 179.89093 * 6 5 4 8 8 S 1.81393 * 109.47286 * 269.69863 * 7 6 5 9 9 O 1.42096 * 108.57861 * 65.51562 * 8 7 6 10 10 O 1.42105 * 108.57947 * 294.48635 * 8 7 6 11 11 C 1.81399 * 101.92117 * 180.02562 * 8 7 6 12 12 C 1.53005 * 109.47445 * 179.97438 * 11 8 7 13 13 C 1.52996 * 109.47245 * 179.97438 * 12 11 8 14 14 C 1.50703 * 109.46946 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00287 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47151 * 90.00298 * 18 16 14 20 20 H 1.48507 * 109.47197 * 210.00055 * 18 16 14 21 21 H 1.48498 * 109.47171 * 330.00226 * 18 16 14 22 22 H 1.08997 * 109.46944 * 269.99756 * 1 2 3 23 23 H 1.08991 * 109.47214 * 30.00186 * 1 2 3 24 24 H 1.09000 * 109.46992 * 150.00267 * 1 2 3 25 25 H 1.09000 * 109.46596 * 149.69762 * 7 6 5 26 26 H 1.09002 * 109.46839 * 29.70385 * 7 6 5 27 27 H 1.09001 * 109.47190 * 299.99865 * 11 8 7 28 28 H 1.09004 * 109.47089 * 59.99998 * 11 8 7 29 29 H 1.09001 * 109.46962 * 300.00183 * 12 11 8 30 30 H 1.09004 * 109.46832 * 60.00020 * 12 11 8 31 31 H 1.09001 * 109.47372 * 300.00032 * 13 12 11 32 32 H 1.09004 * 109.47108 * 60.00288 * 13 12 11 33 33 H 0.96996 * 120.00180 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0606 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0061 6 6 2.3213 -1.1499 0.0006 7 6 1.8210 -2.5714 0.0013 8 16 1.6203 -3.1426 -1.7087 9 8 2.9012 -3.1957 -2.3215 10 8 0.5886 -2.3817 -2.3220 11 6 1.0226 -4.8385 -1.4695 12 6 0.7911 -5.4946 -2.8322 13 6 0.2876 -6.9252 -2.6305 14 6 0.0602 -7.5717 -3.9727 15 1 0.2558 -7.0177 -4.8789 16 6 -0.3964 -8.8707 -4.0437 17 7 -0.6340 -9.5454 -2.9401 18 14 -0.6789 -9.6717 -5.7074 19 1 0.5671 -10.3483 -6.1490 20 1 -1.7720 -10.6708 -5.5966 21 1 -1.0563 -8.6330 -6.6992 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.8609 -2.6183 0.5151 26 1 2.5399 -3.2093 0.5155 27 1 1.7646 -5.4100 -0.9120 28 1 0.0858 -4.8184 -0.9125 29 1 0.0489 -4.9230 -3.3894 30 1 1.7277 -5.5147 -3.3895 31 1 1.0301 -7.4967 -2.0735 32 1 -0.6489 -6.9056 -2.0729 33 1 -0.9549 -10.4594 -2.9901 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119560711.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = -20.435115 kcal Electronic energy + Delta-G solvation = -18662.616567 eV Core-core repulsion = 15432.919995 eV Total energy + Delta-G solvation = -3229.696572 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.75821 -38.16195 -37.21424 -36.41674 -35.97724 -34.70037 -34.13350 -30.66940 -29.73246 -29.50839 -25.65099 -23.86723 -22.44038 -21.87155 -20.01965 -18.64855 -18.35052 -18.00825 -17.31720 -17.07098 -16.81861 -16.46035 -15.87391 -15.59568 -15.47949 -14.47010 -14.35893 -14.30478 -14.02792 -13.61093 -13.47810 -13.23561 -13.16203 -13.12162 -13.07117 -12.92348 -12.77943 -12.72986 -12.58427 -12.12150 -11.83106 -11.67768 -11.60398 -11.31223 -10.92137 -10.53735 -8.20332 -6.29916 -1.39954 -0.66015 0.72609 1.23717 1.42171 1.42853 1.53629 1.63362 1.81964 2.34985 2.42479 2.70324 2.94574 3.13912 3.27465 3.65056 3.79802 3.97115 3.98656 4.11150 4.39898 4.48786 4.62045 4.65454 4.72917 5.02089 5.11740 5.12311 5.50877 5.60383 5.70295 5.84412 6.24366 6.86030 7.39235 8.90713 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.048349 B = 0.003462 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.984496 B = 8086.164326 C = 8174.506488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.096 3.904 3 N -0.296 5.296 4 O -0.002 6.002 5 N -0.278 5.278 6 C 0.079 3.921 7 C -0.548 4.548 8 S 2.409 3.591 9 O -0.974 6.974 10 O -0.951 6.951 11 C -0.579 4.579 12 C -0.110 4.110 13 C 0.029 3.971 14 C -0.552 4.552 15 H 0.056 0.944 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.266 1.266 22 H 0.138 0.862 23 H 0.102 0.898 24 H 0.117 0.883 25 H 0.225 0.775 26 H 0.196 0.804 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.013 0.987 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 15.105 11.178 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 N -0.045 5.045 4 O -0.138 6.138 5 N -0.023 5.023 6 C -0.105 4.105 7 C -0.675 4.675 8 S 2.594 3.406 9 O -0.971 6.971 10 O -0.948 6.948 11 C -0.711 4.711 12 C -0.149 4.149 13 C -0.009 4.009 14 C -0.590 4.590 15 H 0.075 0.925 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.782 3.218 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.190 1.190 22 H 0.156 0.844 23 H 0.120 0.880 24 H 0.136 0.864 25 H 0.242 0.758 26 H 0.214 0.786 27 H 0.176 0.824 28 H 0.190 0.810 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.031 0.969 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.807 16.311 10.467 19.398 hybrid contribution -0.432 -1.390 -0.181 1.466 sum 0.376 14.922 10.286 18.127 Atomic orbital electron populations 1.21136 0.80345 1.07667 1.07586 1.25383 1.02474 0.87459 0.93444 1.79956 0.88363 1.20364 1.15783 1.93394 1.21823 1.13207 1.85405 1.79996 1.18527 0.91743 1.12043 1.23928 0.90037 0.98157 0.98378 1.29430 1.16239 0.95099 1.26777 1.08370 0.74919 0.79357 0.77963 1.93568 1.42684 1.87169 1.73708 1.93553 1.58350 1.69814 1.73075 1.30164 1.15456 1.18232 1.07208 1.21346 1.01551 0.98569 0.93405 1.18997 0.95754 0.90417 0.95727 1.21758 1.44372 0.98704 0.94212 0.92547 1.25841 0.95146 0.98022 1.00246 1.70040 1.46534 1.11253 1.28893 0.85571 0.77999 0.78354 0.79910 1.20034 1.20536 1.19045 0.84432 0.87958 0.86436 0.75818 0.78635 0.82426 0.81024 0.91297 0.92328 0.97570 0.96898 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.05 71.24 0.72 -0.26 16 2 C 0.10 1.78 7.19 43.49 0.31 2.09 16 3 N -0.30 -7.31 12.98 -47.15 -0.61 -7.92 16 4 O 0.00 -0.06 13.71 70.16 0.96 0.90 16 5 N -0.28 -7.48 12.98 -47.16 -0.61 -8.09 16 6 C 0.08 1.57 6.45 43.49 0.28 1.85 16 7 C -0.55 -5.96 5.97 71.24 0.43 -5.53 16 8 S 2.41 52.85 4.70 -56.49 -0.27 52.58 16 9 O -0.97 -31.52 18.10 -127.37 -2.31 -33.83 16 10 O -0.95 -24.98 17.30 -127.37 -2.20 -27.18 16 11 C -0.58 -12.56 5.81 71.98 0.42 -12.14 16 12 C -0.11 -3.97 5.16 30.59 0.16 -3.82 16 13 C 0.03 1.39 4.97 29.85 0.15 1.54 16 14 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 15 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -53.37 13.29 21.45 0.28 -53.08 16 18 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 23 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.12 0.84 6.97 -2.39 -0.02 0.82 16 25 H 0.22 -0.21 7.78 -2.39 -0.02 -0.23 16 26 H 0.20 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.17 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 32 H 0.01 0.61 8.14 -2.38 -0.02 0.60 16 33 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -82.43 308.15 1.55 -80.88 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: 1.12 Total: -3.87 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 3.15 Total: -45.37 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.94 Total: -69.09 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -3.55 Total: -60.11 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 52.85 SS G_CDS: -0.27 Total: 52.58 kcal Total: -82.43 1.55 -80.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119560711.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.448 kcal (2) G-P(sol) polarization free energy of solvation -82.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds