Wall clock time and date at job start Mon Mar 30 2020 01:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46507 * 109.46571 * 90.00580 * 7 6 2 9 9 S 1.65596 * 119.99813 * 164.99895 * 8 7 6 10 10 O 1.42098 * 104.27861 * 181.06731 * 9 8 7 11 11 O 1.42097 * 104.27789 * 308.93009 * 9 8 7 12 12 C 1.81404 * 104.45122 * 64.99959 * 9 8 7 13 13 C 1.52991 * 109.47403 * 179.97438 * 12 9 8 14 14 C 1.50697 * 109.47331 * 179.97438 * 13 12 9 15 15 H 1.07999 * 120.00078 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00186 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99978 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47156 * 119.99772 * 18 16 14 21 21 H 1.48501 * 109.47257 * 240.00041 * 18 16 14 22 22 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 23 23 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 24 24 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 25 25 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 26 26 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 27 27 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 28 28 H 0.96993 * 119.99952 * 344.99690 * 8 7 6 29 29 H 1.09001 * 109.47032 * 300.00248 * 12 9 8 30 30 H 1.08998 * 109.47254 * 59.99528 * 12 9 8 31 31 H 1.09001 * 109.47344 * 300.00198 * 13 12 9 32 32 H 1.09002 * 109.47024 * 60.00110 * 13 12 9 33 33 H 0.97003 * 120.00121 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7031 -2.9895 -1.3793 9 16 1.5844 -4.6103 -1.6970 10 8 1.4831 -4.6835 -3.1125 11 8 2.6889 -5.1837 -1.0110 12 6 0.0233 -5.1108 -0.9204 13 6 -0.2028 -6.6068 -1.1476 14 6 -1.4993 -7.0227 -0.5019 15 1 -2.1021 -6.2928 0.0181 16 6 -1.9162 -8.3349 -0.5750 17 7 -1.1820 -9.2238 -1.2078 18 14 -3.5237 -8.8502 0.2248 19 1 -4.1564 -7.6713 0.8690 20 1 -4.4372 -9.3995 -0.8091 21 1 -3.2553 -9.8897 1.2508 22 1 -0.3633 -0.0006 -1.0278 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 4.4065 1.3436 0.0003 26 1 2.5902 -3.1348 0.5157 27 1 0.8916 -2.6029 0.5158 28 1 1.6757 -2.3493 -2.1074 29 1 0.0684 -4.9081 0.1496 30 1 -0.7991 -4.5482 -1.3623 31 1 -0.2481 -6.8091 -2.2177 32 1 0.6196 -7.1697 -0.7059 33 1 -1.4754 -10.1469 -1.2595 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120305901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:17 Heat of formation + Delta-G solvation = -92.173172 kcal Electronic energy + Delta-G solvation = -18837.431643 eV Core-core repulsion = 15604.624276 eV Total energy + Delta-G solvation = -3232.807367 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.35463 -38.19760 -37.07303 -36.77486 -36.08257 -35.85733 -33.09123 -32.44527 -29.07726 -27.56000 -26.40551 -23.57917 -23.25647 -21.88469 -20.40049 -19.16566 -18.59674 -18.08228 -17.65484 -17.16559 -17.05506 -16.49992 -16.16230 -15.88917 -15.21101 -14.82157 -14.52574 -14.36221 -14.12374 -13.74397 -13.66032 -13.21137 -13.17697 -13.11781 -12.92886 -12.90402 -12.74127 -12.20916 -12.08316 -12.01053 -11.71981 -11.55516 -11.17786 -10.62432 -10.52400 -9.78173 -8.22980 -6.36289 -0.74444 0.39060 1.44314 1.44509 1.57555 1.60833 1.76944 1.95696 2.40845 2.81635 3.11348 3.24678 3.30359 3.62516 3.82787 4.01597 4.13486 4.16743 4.27870 4.61492 4.69218 4.80902 4.82316 4.86526 5.00405 5.17276 5.32239 5.33733 5.43335 5.72577 5.94552 6.09679 6.69841 6.78530 7.34096 8.89457 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.004171 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.982005 B = 6710.772162 C = 7343.048462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 N -0.523 5.523 4 C 0.191 3.809 5 O -0.213 6.213 6 C -0.076 4.076 7 C 0.196 3.804 8 N -1.109 6.109 9 S 2.620 3.380 10 O -0.998 6.998 11 O -0.997 6.997 12 C -0.582 4.582 13 C 0.016 3.984 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.085 0.915 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.293 0.707 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.424 0.576 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 20.258 4.707 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 N -0.252 5.252 4 C -0.035 4.035 5 O -0.099 6.099 6 C -0.130 4.130 7 C 0.070 3.930 8 N -0.870 5.870 9 S 2.718 3.282 10 O -0.988 6.988 11 O -0.987 6.987 12 C -0.715 4.715 13 C -0.022 4.022 14 C -0.573 4.573 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.176 1.176 20 H -0.207 1.207 21 H -0.206 1.206 22 H 0.104 0.896 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.308 0.692 26 H 0.114 0.886 27 H 0.152 0.848 28 H 0.260 0.740 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.088 20.053 4.323 21.135 hybrid contribution -0.572 -0.813 0.062 0.996 sum 4.516 19.240 4.385 20.243 Atomic orbital electron populations 1.20368 0.84692 1.04679 1.04099 1.22033 0.99241 0.87229 1.03123 1.70450 1.02496 1.32216 1.20055 1.29146 0.98365 0.78993 0.96989 1.84480 1.30294 1.25577 1.69568 1.23035 0.81168 0.97479 1.11321 1.19856 1.03650 0.86544 0.82925 1.55472 1.91467 1.25760 1.14276 1.04538 0.77324 0.72764 0.73618 1.93513 1.88419 1.85630 1.31229 1.93507 1.51141 1.77498 1.76520 1.30310 1.19745 1.06697 1.14790 1.18856 0.98297 0.88300 0.96791 1.21574 1.05926 0.94900 1.34933 0.90159 1.26105 1.01396 0.96910 0.95920 1.70109 1.40214 1.03529 1.43709 0.85285 0.78390 0.78685 0.78003 1.17629 1.20718 1.20650 0.89619 0.88485 0.90245 0.69159 0.88595 0.84832 0.74046 0.83054 0.83196 0.97592 0.97374 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.22 71.23 0.73 -0.42 16 2 C 0.00 0.08 7.11 41.26 0.29 0.38 16 3 N -0.52 -10.68 11.30 -304.07 -3.43 -14.11 16 4 C 0.19 2.94 13.23 130.48 1.73 4.66 16 5 O -0.21 -4.35 10.77 -3.68 -0.04 -4.39 16 6 C -0.08 -1.54 6.78 24.79 0.17 -1.37 16 7 C 0.20 3.73 6.46 85.63 0.55 4.28 16 8 N -1.11 -25.16 5.88 -190.78 -1.12 -26.28 16 9 S 2.62 86.51 5.46 -56.49 -0.31 86.20 16 10 O -1.00 -40.08 18.08 -127.65 -2.31 -42.39 16 11 O -1.00 -39.67 17.50 -127.65 -2.23 -41.90 16 12 C -0.58 -19.55 6.01 71.98 0.43 -19.12 16 13 C 0.02 0.82 4.98 29.84 0.15 0.97 16 14 C -0.53 -28.27 9.11 25.60 0.23 -28.04 16 15 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 16 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -55.93 13.29 21.45 0.28 -55.65 16 18 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 19 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.10 1.01 7.17 -2.39 -0.02 0.99 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.29 1.14 8.06 -2.91 -0.02 1.12 16 26 H 0.10 1.94 7.69 -2.39 -0.02 1.93 16 27 H 0.13 1.63 7.17 -2.39 -0.02 1.61 16 28 H 0.42 8.52 8.61 -96.76 -0.83 7.69 16 29 H 0.15 4.10 8.14 -2.39 -0.02 4.08 16 30 H 0.15 4.24 8.14 -2.39 -0.02 4.22 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -80.35 306.08 -2.09 -82.43 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.30 Total: 10.45 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.75 Total: -38.48 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.27 Total: -96.04 kcal Atomic # 8 Polarization: -84.09 SS G_CDS: -4.58 Total: -88.67 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 86.51 SS G_CDS: -0.31 Total: 86.20 kcal Total: -80.35 -2.09 -82.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120305901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.742 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds