Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46931 * 2 1 4 4 C 1.46506 * 120.00081 * 85.00314 * 3 2 1 5 5 C 1.50699 * 109.46928 * 274.99878 * 4 3 2 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00518 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99987 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46922 * 90.00621 * 9 7 5 11 11 H 1.48500 * 109.47411 * 210.00442 * 9 7 5 12 12 H 1.48494 * 109.47378 * 330.00637 * 9 7 5 13 13 S 1.65599 * 120.00006 * 265.00079 * 3 2 1 14 14 O 1.42092 * 106.40565 * 23.53997 * 13 3 2 15 15 O 1.42106 * 106.40075 * 156.46217 * 13 3 2 16 16 C 1.76206 * 107.21692 * 269.99928 * 13 3 2 17 17 C 1.41375 * 128.00422 * 114.68471 * 16 13 3 18 18 N 1.30177 * 106.39466 * 179.89749 * 17 16 13 19 19 O 1.20920 * 111.60524 * 0.38390 * 18 17 16 20 20 C 1.34049 * 111.56606 * 359.74864 * 19 18 17 21 21 C 1.50696 * 126.77530 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47170 * 59.99990 * 1 2 3 23 23 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47270 * 299.99780 * 1 2 3 25 25 H 1.08998 * 109.47270 * 240.00220 * 2 1 3 26 26 H 1.08997 * 109.47170 * 120.00010 * 2 1 3 27 27 H 1.09004 * 109.47073 * 34.99706 * 4 3 2 28 28 H 1.09000 * 109.47212 * 154.99789 * 4 3 2 29 29 H 0.96992 * 120.00316 * 179.97438 * 8 7 5 30 30 H 1.08007 * 126.80475 * 0.02562 * 17 16 13 31 31 H 1.08993 * 109.47127 * 269.99931 * 21 20 19 32 32 H 1.09000 * 109.47188 * 30.00874 * 21 20 19 33 33 H 1.09005 * 109.47030 * 150.00250 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8360 2.7288 1.6357 6 1 -0.0228 2.5941 0.9948 7 6 0.7224 3.4672 2.7944 8 7 1.7680 3.6308 3.5752 9 14 -0.9164 4.2365 3.2549 10 1 -1.6967 3.2811 4.0817 11 1 -0.6789 5.4815 4.0286 12 1 -1.6765 4.5582 2.0204 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5187 -1.1997 16 6 4.1169 1.7941 -1.7319 17 6 4.6849 1.0359 -2.7813 18 7 5.9741 1.0708 -2.6038 19 8 6.2713 1.7138 -1.6238 20 6 5.1863 2.2070 -1.0104 21 6 5.1612 3.0533 0.2363 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4690 1.4182 2.0481 28 1 2.9080 2.8919 1.1513 29 1 1.6881 4.1506 4.3902 30 1 4.1545 0.5299 -3.5745 31 1 5.0943 2.4080 1.1121 32 1 6.0738 3.6468 0.2910 33 1 4.2972 3.7173 0.2074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187357019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = -13.706543 kcal Electronic energy + Delta-G solvation = -20244.622816 eV Core-core repulsion = 17015.218017 eV Total energy + Delta-G solvation = -3229.404799 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.99993 -36.74785 -36.20929 -35.27608 -34.21686 -33.21810 -32.66567 -29.90866 -27.88141 -26.81023 -24.06024 -22.85839 -22.01954 -21.82675 -18.50766 -17.79317 -17.52513 -16.86742 -16.62262 -15.97192 -15.40871 -14.54817 -14.35678 -13.90371 -13.48905 -13.21261 -13.12895 -12.98596 -12.65093 -12.26800 -11.92516 -11.60438 -11.55809 -11.38161 -11.34740 -11.08497 -11.01682 -11.00485 -10.75676 -10.48656 -10.42708 -9.96512 -9.67906 -9.59867 -8.49559 -8.20691 -6.13517 -4.16024 0.85370 1.19308 1.93933 2.97573 3.28019 3.35290 3.40512 3.57958 4.17849 4.23708 4.39951 4.51121 4.65644 5.19133 5.24404 5.30357 5.37612 5.50492 5.60824 5.81067 5.83110 5.90335 6.05538 6.13532 6.34692 6.64869 6.93996 7.09077 7.28979 7.49362 7.85007 8.06324 8.12339 8.85945 9.49157 10.95194 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.007190 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.226288 B = 3893.628657 C = 4467.255917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 N -0.981 5.981 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.714 3.286 14 O -0.968 6.968 15 O -0.936 6.936 16 C -0.796 4.796 17 C 0.076 3.924 18 N -0.371 5.371 19 O 0.090 5.910 20 C 0.113 3.887 21 C -0.115 4.115 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.202 0.798 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.281 -5.107 -5.872 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.007 3.993 3 N -0.822 5.822 4 C 0.126 3.874 5 C -0.565 4.565 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.797 3.203 14 O -0.959 6.959 15 O -0.926 6.926 16 C -0.880 4.880 17 C -0.106 4.106 18 N -0.078 5.078 19 O 0.031 5.969 20 C 0.047 3.953 21 C -0.172 4.172 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.219 0.781 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.986 -5.057 -6.875 10.425 hybrid contribution -0.938 0.271 0.631 1.163 sum 5.048 -4.786 -6.244 9.347 Atomic orbital electron populations 1.22260 0.96015 1.01036 1.03833 1.21027 0.95067 0.81796 1.01411 1.57504 1.77515 1.23492 1.23656 1.19326 0.98116 0.91190 0.78738 1.21506 0.96286 1.31856 1.06859 0.91704 1.24898 0.96863 0.95949 0.96168 1.69885 1.29251 1.40724 1.13679 0.86549 0.83830 0.78808 0.78621 1.20659 1.21103 1.19669 1.01599 0.72031 0.73890 0.72796 1.93502 1.68869 1.75946 1.57553 1.93608 1.84986 1.29081 1.84964 1.33709 1.28008 1.18368 1.07946 1.24639 0.89330 0.97806 0.98805 1.73813 1.17264 1.13567 1.03121 1.84815 1.33666 1.49029 1.29362 1.24661 0.84213 0.91629 0.94760 1.21185 1.07146 0.98917 0.89921 0.92650 0.92925 0.90149 0.91904 0.90846 0.94440 0.93803 0.92661 0.78093 0.86850 0.88431 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.83 37.16 0.37 -2.49 16 2 C 0.13 2.17 6.09 -4.04 -0.02 2.15 16 3 N -0.98 -18.71 2.80 -115.66 -0.32 -19.03 16 4 C 0.25 5.50 5.12 -5.19 -0.03 5.47 16 5 C -0.53 -13.45 8.41 -34.44 -0.29 -13.74 16 6 H 0.06 1.67 6.89 -52.48 -0.36 1.31 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -24.08 13.29 55.43 0.74 -23.34 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 S 2.71 51.52 5.55 -107.50 -0.60 50.93 16 14 O -0.97 -19.08 16.84 -57.17 -0.96 -20.04 16 15 O -0.94 -20.65 15.87 -57.17 -0.91 -21.56 16 16 C -0.80 -13.01 6.37 -39.38 -0.25 -13.26 16 17 C 0.08 1.14 11.98 -17.06 -0.20 0.94 16 18 N -0.37 -5.79 12.07 30.36 0.37 -5.42 16 19 O 0.09 1.35 11.20 17.15 0.19 1.54 16 20 C 0.11 1.71 7.49 -35.31 -0.26 1.44 16 21 C -0.12 -1.53 9.20 36.00 0.33 -1.20 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.48 6.59 -51.93 -0.34 1.14 16 25 H 0.06 0.90 7.61 -51.93 -0.40 0.50 16 26 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 27 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 28 H 0.04 0.98 4.67 -51.93 -0.24 0.73 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.20 2.45 8.06 -52.48 -0.42 2.03 16 31 H 0.11 1.42 8.00 -51.93 -0.42 1.00 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.12 1.93 5.57 -51.93 -0.29 1.64 16 LS Contribution 294.55 15.07 4.44 4.44 Total: -1.00 -30.47 294.55 -6.24 -36.71 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.70 Total: -0.75 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.46 Total: -19.12 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.78 Total: -47.80 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.68 Total: -40.06 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 51.52 SS G_CDS: -0.60 Total: 50.93 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.47 -6.24 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187357019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.000 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds