Wall clock time and date at job start Mon Mar 30 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46931 * 2 1 4 4 C 1.46506 * 120.00081 * 85.00314 * 3 2 1 5 5 C 1.50699 * 109.46928 * 274.99878 * 4 3 2 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00518 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99987 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46922 * 90.00621 * 9 7 5 11 11 H 1.48500 * 109.47411 * 210.00442 * 9 7 5 12 12 H 1.48494 * 109.47378 * 330.00637 * 9 7 5 13 13 S 1.65599 * 120.00006 * 265.00079 * 3 2 1 14 14 O 1.42092 * 106.40565 * 23.53997 * 13 3 2 15 15 O 1.42106 * 106.40075 * 156.46217 * 13 3 2 16 16 C 1.76206 * 107.21692 * 269.99928 * 13 3 2 17 17 C 1.41375 * 128.00422 * 114.68471 * 16 13 3 18 18 N 1.30177 * 106.39466 * 179.89749 * 17 16 13 19 19 O 1.20920 * 111.60524 * 0.38390 * 18 17 16 20 20 C 1.34049 * 111.56606 * 359.74864 * 19 18 17 21 21 C 1.50696 * 126.77530 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47170 * 59.99990 * 1 2 3 23 23 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47270 * 299.99780 * 1 2 3 25 25 H 1.08998 * 109.47270 * 240.00220 * 2 1 3 26 26 H 1.08997 * 109.47170 * 120.00010 * 2 1 3 27 27 H 1.09004 * 109.47073 * 34.99706 * 4 3 2 28 28 H 1.09000 * 109.47212 * 154.99789 * 4 3 2 29 29 H 0.96992 * 120.00316 * 179.97438 * 8 7 5 30 30 H 1.08007 * 126.80475 * 0.02562 * 17 16 13 31 31 H 1.08993 * 109.47127 * 269.99931 * 21 20 19 32 32 H 1.09000 * 109.47188 * 30.00874 * 21 20 19 33 33 H 1.09005 * 109.47030 * 150.00250 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8360 2.7288 1.6357 6 1 -0.0228 2.5941 0.9948 7 6 0.7224 3.4672 2.7944 8 7 1.7680 3.6308 3.5752 9 14 -0.9164 4.2365 3.2549 10 1 -1.6967 3.2811 4.0817 11 1 -0.6789 5.4815 4.0286 12 1 -1.6765 4.5582 2.0204 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5187 -1.1997 16 6 4.1169 1.7941 -1.7319 17 6 4.6849 1.0359 -2.7813 18 7 5.9741 1.0708 -2.6038 19 8 6.2713 1.7138 -1.6238 20 6 5.1863 2.2070 -1.0104 21 6 5.1612 3.0533 0.2363 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4690 1.4182 2.0481 28 1 2.9080 2.8919 1.1513 29 1 1.6881 4.1506 4.3902 30 1 4.1545 0.5299 -3.5745 31 1 5.0943 2.4080 1.1121 32 1 6.0738 3.6468 0.2910 33 1 4.2972 3.7173 0.2074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187357019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:22 Heat of formation + Delta-G solvation = -34.689699 kcal Electronic energy + Delta-G solvation = -20245.532714 eV Core-core repulsion = 17015.218017 eV Total energy + Delta-G solvation = -3230.314697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.20680 -38.32082 -37.73988 -36.86757 -35.43314 -34.57245 -34.40052 -31.40853 -29.06537 -28.56782 -25.31851 -24.61113 -23.41843 -23.08317 -19.93069 -19.02584 -18.93089 -18.52383 -18.25680 -17.36397 -17.02683 -16.31404 -15.62060 -15.34824 -14.81926 -14.61824 -14.57911 -14.21180 -13.94345 -13.82113 -13.46947 -13.15107 -13.11515 -12.98306 -12.80218 -12.76478 -12.62680 -12.46951 -12.17303 -12.08364 -11.95941 -11.58167 -11.42667 -10.81799 -10.46964 -9.81610 -8.11732 -6.18413 -0.62205 -0.05194 0.73398 1.43958 1.47312 1.55942 1.77484 2.13035 2.47950 2.75748 2.95259 3.21086 3.35346 3.41035 3.88383 4.01649 4.10890 4.46676 4.51582 4.52931 4.57695 4.69493 4.75940 4.99030 5.03241 5.26910 5.30612 5.53362 5.63636 5.81113 5.97498 6.21778 6.86991 6.87714 7.48409 8.95624 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.007190 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.226288 B = 3893.628657 C = 4467.255917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.984 5.984 4 C 0.257 3.743 5 C -0.537 4.537 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.919 5.919 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.277 1.277 13 S 2.728 3.272 14 O -0.978 6.978 15 O -0.975 6.975 16 C -0.811 4.811 17 C 0.081 3.919 18 N -0.379 5.379 19 O 0.093 5.907 20 C 0.126 3.874 21 C -0.119 4.119 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.265 0.735 30 H 0.227 0.773 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -5.985 -6.142 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.824 5.824 4 C 0.134 3.866 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.559 5.559 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.202 1.202 13 S 2.814 3.186 14 O -0.969 6.969 15 O -0.965 6.965 16 C -0.899 4.899 17 C -0.101 4.101 18 N -0.088 5.088 19 O 0.036 5.964 20 C 0.060 3.940 21 C -0.175 4.175 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.451 -5.942 -7.139 11.309 hybrid contribution -1.051 0.502 0.664 1.341 sum 5.400 -5.439 -6.475 10.034 Atomic orbital electron populations 1.22242 0.96348 1.02632 1.01857 1.21336 0.94914 0.80624 1.03429 1.57379 1.78180 1.24422 1.22438 1.19045 0.96502 0.91207 0.79841 1.21836 0.97446 1.31774 1.06642 0.92694 1.25518 0.99393 0.96650 0.96468 1.69947 1.30418 1.41486 1.14031 0.85801 0.80946 0.78318 0.78112 1.19719 1.20795 1.20223 1.00793 0.72518 0.72872 0.72380 1.93480 1.69868 1.75836 1.57686 1.93562 1.86047 1.31453 1.85414 1.33270 1.26668 1.20341 1.09624 1.25053 0.89116 0.97111 0.98785 1.73811 1.17463 1.14073 1.03416 1.84821 1.33348 1.48958 1.29256 1.24905 0.83896 0.90639 0.94607 1.21277 1.07840 0.98933 0.89456 0.94020 0.89612 0.92607 0.89402 0.89264 0.94772 0.93824 0.92581 0.75605 0.85880 0.84995 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 9.83 71.98 0.71 -4.79 16 2 C 0.12 3.78 6.09 86.38 0.53 4.31 16 3 N -0.98 -36.88 2.80 -519.84 -1.45 -38.34 16 4 C 0.26 11.38 5.12 85.63 0.44 11.82 16 5 C -0.54 -27.67 8.41 25.60 0.22 -27.45 16 6 H 0.05 2.87 6.89 -2.91 -0.02 2.85 16 7 C 0.02 1.02 5.46 84.65 0.46 1.48 16 8 N -0.92 -49.32 13.29 21.45 0.28 -49.03 16 9 Si 0.94 42.34 29.54 68.60 2.03 44.37 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 S 2.73 102.03 5.55 -56.49 -0.31 101.71 16 14 O -0.98 -37.55 16.84 -128.00 -2.16 -39.71 16 15 O -0.97 -43.41 15.87 -128.00 -2.03 -45.44 16 16 C -0.81 -25.32 6.37 22.40 0.14 -25.17 16 17 C 0.08 2.27 11.98 85.71 1.03 3.29 16 18 N -0.38 -11.02 12.07 -59.26 -0.72 -11.73 16 19 O 0.09 2.59 11.20 71.56 0.80 3.39 16 20 C 0.13 3.58 7.49 25.04 0.19 3.77 16 21 C -0.12 -3.00 9.20 71.23 0.66 -2.35 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 2.05 6.59 -2.39 -0.02 2.03 16 25 H 0.09 2.29 7.61 -2.39 -0.02 2.27 16 26 H 0.09 2.48 8.00 -2.39 -0.02 2.47 16 27 H 0.03 1.53 8.00 -2.38 -0.02 1.51 16 28 H 0.04 1.95 4.67 -2.39 -0.01 1.94 16 29 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 30 H 0.23 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.12 2.91 8.00 -2.39 -0.02 2.89 16 32 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.10 3.10 5.57 -2.38 -0.01 3.09 16 Total: -1.00 -63.88 294.55 1.94 -61.95 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.13 Total: 7.93 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.36 Total: -35.09 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -1.88 Total: -99.10 kcal Atomic # 8 Polarization: -78.37 SS G_CDS: -3.39 Total: -81.76 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 102.03 SS G_CDS: -0.31 Total: 101.71 kcal Total: -63.88 1.94 -61.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187357019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.256 kcal (2) G-P(sol) polarization free energy of solvation -63.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds