Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 H 1.08994 * 109.47145 * 304.86835 * 3 2 1 5 5 C 1.50694 * 109.47274 * 184.86402 * 3 2 1 6 6 H 1.08000 * 120.00504 * 239.99678 * 5 3 2 7 7 C 1.37885 * 119.99778 * 60.00366 * 5 3 2 8 8 N 1.31505 * 119.99781 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47751 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47422 * 119.99947 * 9 7 5 12 12 H 1.48502 * 109.46962 * 239.99477 * 9 7 5 13 13 N 1.46505 * 109.46932 * 64.86732 * 3 2 1 14 14 S 1.65599 * 119.99822 * 240.61487 * 13 3 2 15 15 O 1.42104 * 106.40268 * 50.35447 * 14 13 3 16 16 O 1.42097 * 106.40490 * 183.27292 * 14 13 3 17 17 C 1.76198 * 107.22038 * 296.81589 * 14 13 3 18 18 C 1.41379 * 128.01059 * 114.73506 * 17 14 13 19 19 N 1.30171 * 106.40021 * 179.89679 * 18 17 14 20 20 O 1.20928 * 111.59967 * 0.38621 * 19 18 17 21 21 C 1.34042 * 111.56912 * 359.74497 * 20 19 18 22 22 C 1.50692 * 126.77526 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47534 * 296.78978 * 1 2 3 24 24 H 1.09005 * 109.47247 * 176.79036 * 1 2 3 25 25 H 1.09005 * 109.47130 * 56.79290 * 1 2 3 26 26 H 1.09003 * 109.46830 * 119.99513 * 2 1 3 27 27 H 1.08999 * 109.47566 * 240.00201 * 2 1 3 28 28 H 0.97003 * 120.00010 * 180.02562 * 8 7 5 29 29 H 0.97000 * 120.00283 * 60.61580 * 13 3 2 30 30 H 1.08004 * 126.80066 * 0.02810 * 18 17 14 31 31 H 1.09003 * 109.47408 * 274.63248 * 22 21 20 32 32 H 1.09003 * 109.47687 * 34.63496 * 22 21 20 33 33 H 1.09003 * 109.47128 * 154.63507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6072 1.9809 -0.8431 5 6 3.5421 1.4443 -0.1205 6 1 4.1457 1.8895 0.6566 7 6 4.1459 0.8776 -1.2229 8 7 3.4109 0.3351 -2.1689 9 14 6.0079 0.8791 -1.3719 10 1 6.5991 1.5452 -0.1836 11 1 6.4994 -0.5199 -1.4513 12 1 6.4056 1.6138 -2.5996 13 7 1.6496 2.0984 1.2505 14 16 0.6774 3.4385 1.2141 15 8 -0.4345 3.1056 0.3943 16 8 0.5473 3.8766 2.5596 17 6 1.5625 4.7021 0.3628 18 6 1.2433 5.3056 -0.8752 19 7 2.1756 6.1840 -1.1070 20 8 3.0001 6.2021 -0.2225 21 6 2.7094 5.3160 0.7403 22 6 3.5023 5.0541 1.9947 23 1 -0.3634 0.4632 0.9174 24 1 -0.3634 -1.0261 -0.0575 25 1 -0.3634 0.5628 -0.8599 26 1 1.8932 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 3.8357 -0.0639 -2.9444 29 1 1.9606 1.7478 2.0998 30 1 0.3931 5.0835 -1.5031 31 1 4.2927 4.3344 1.7813 32 1 3.9449 5.9862 2.3461 33 1 2.8431 4.6522 2.7641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187401579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -25.691066 kcal Electronic energy + Delta-G solvation = -20336.394747 eV Core-core repulsion = 17106.470260 eV Total energy + Delta-G solvation = -3229.924487 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.79939 -36.82341 -35.97703 -35.39350 -34.06230 -33.08180 -32.30656 -30.58768 -27.80157 -26.72773 -23.92874 -23.07079 -21.75421 -20.17759 -19.02277 -17.76167 -17.50263 -17.11627 -16.39586 -16.01670 -15.36331 -14.73116 -14.19492 -13.83782 -13.39520 -13.21739 -13.13763 -12.98717 -12.58284 -11.88976 -11.78727 -11.58325 -11.56117 -11.38655 -11.29755 -11.09687 -10.90748 -10.88660 -10.55335 -10.34580 -10.04953 -9.74507 -9.59543 -9.41774 -8.59385 -8.33422 -6.20498 -4.30272 0.91751 1.36319 2.18059 3.12537 3.17115 3.26216 3.26905 3.61799 4.17644 4.26953 4.39417 4.61691 4.77855 5.09806 5.26551 5.42535 5.46016 5.59794 5.93937 6.04645 6.18270 6.30905 6.33814 6.60651 6.86032 7.07098 7.19126 7.52594 7.60068 7.78488 7.93127 8.18015 8.27595 8.72919 9.37181 10.83810 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.009715 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.698041 B = 2881.360695 C = 3852.548559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.280 3.720 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 N -1.096 6.096 14 S 2.723 3.277 15 O -0.956 6.956 16 O -0.980 6.980 17 C -0.778 4.778 18 C 0.084 3.916 19 N -0.368 5.368 20 O 0.091 5.909 21 C 0.112 3.888 22 C -0.107 4.107 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.103 0.897 28 H 0.264 0.736 29 H 0.409 0.591 30 H 0.202 0.798 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 5.579 6.463 8.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.064 0.936 5 C -0.572 4.572 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.858 5.858 14 S 2.806 3.194 15 O -0.946 6.946 16 O -0.970 6.970 17 C -0.865 4.865 18 C -0.098 4.098 19 N -0.075 5.075 20 O 0.033 5.967 21 C 0.046 3.954 22 C -0.164 4.164 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.219 0.781 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.541 6.595 5.419 8.674 hybrid contribution 1.418 -0.538 0.033 1.517 sum -0.123 6.057 5.452 8.151 Atomic orbital electron populations 1.21826 0.98473 0.99264 1.00903 1.21893 0.92469 0.99308 1.02967 1.18606 0.94762 0.90256 0.78817 0.93554 1.21456 0.91115 1.38689 1.05950 0.91810 1.24921 0.98388 0.94856 0.95552 1.69860 1.35065 1.37686 1.09461 0.86509 0.85276 0.77909 0.78133 1.19687 1.20801 1.21006 1.55499 1.70691 1.42988 1.16642 1.01030 0.73473 0.72394 0.72509 1.93569 1.47971 1.82716 1.70333 1.93524 1.86293 1.82482 1.34686 1.33178 1.14085 1.26702 1.12486 1.24586 0.99266 0.92055 0.93900 1.73789 1.01806 1.21995 1.09932 1.84789 1.40972 1.47756 1.23185 1.24368 0.92137 0.86953 0.91945 1.20887 1.00928 1.04888 0.89650 0.94478 0.94777 0.92968 0.94196 0.87867 0.92538 0.75721 0.78134 0.87001 0.88663 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.46 37.16 0.35 -2.56 16 2 C -0.13 -2.75 5.45 -26.73 -0.15 -2.90 16 3 C 0.28 6.19 2.26 -69.08 -0.16 6.04 16 4 H 0.05 1.14 7.73 -51.93 -0.40 0.74 16 5 C -0.53 -12.75 8.84 -34.44 -0.30 -13.05 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.66 5.29 -17.82 -0.09 1.57 16 8 N -0.88 -23.21 11.29 55.43 0.63 -22.59 16 9 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 N -1.10 -19.98 4.87 -5.88 -0.03 -20.01 16 14 S 2.72 48.93 5.50 -107.50 -0.59 48.34 16 15 O -0.96 -19.35 17.13 -57.17 -0.98 -20.33 16 16 O -0.98 -17.86 16.86 -57.17 -0.96 -18.83 16 17 C -0.78 -13.68 6.31 -39.38 -0.25 -13.93 16 18 C 0.08 1.47 11.98 -17.06 -0.20 1.27 16 19 N -0.37 -6.64 12.07 30.35 0.37 -6.28 16 20 O 0.09 1.54 11.20 17.17 0.19 1.73 16 21 C 0.11 1.79 7.49 -35.31 -0.26 1.52 16 22 C -0.11 -1.26 10.33 36.00 0.37 -0.89 16 23 H 0.04 0.69 7.73 -51.93 -0.40 0.29 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 28 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.41 6.43 8.96 -34.47 -0.31 6.13 16 30 H 0.20 3.05 8.06 -52.48 -0.42 2.63 16 31 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 1.25 6.82 -51.93 -0.35 0.89 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -29.75 299.28 -6.44 -36.19 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.86 Total: 5.52 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -0.69 Total: -22.93 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.96 Total: -48.87 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.75 Total: -37.43 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 48.93 SS G_CDS: -0.59 Total: 48.34 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.75 -6.44 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187401579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.502 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds