Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 H 1.08994 * 109.47145 * 304.86835 * 3 2 1 5 5 C 1.50694 * 109.47274 * 184.86402 * 3 2 1 6 6 H 1.08000 * 120.00504 * 239.99678 * 5 3 2 7 7 C 1.37885 * 119.99778 * 60.00366 * 5 3 2 8 8 N 1.31505 * 119.99781 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47751 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47422 * 119.99947 * 9 7 5 12 12 H 1.48502 * 109.46962 * 239.99477 * 9 7 5 13 13 N 1.46505 * 109.46932 * 64.86732 * 3 2 1 14 14 S 1.65599 * 119.99822 * 240.61487 * 13 3 2 15 15 O 1.42104 * 106.40268 * 50.35447 * 14 13 3 16 16 O 1.42097 * 106.40490 * 183.27292 * 14 13 3 17 17 C 1.76198 * 107.22038 * 296.81589 * 14 13 3 18 18 C 1.41379 * 128.01059 * 114.73506 * 17 14 13 19 19 N 1.30171 * 106.40021 * 179.89679 * 18 17 14 20 20 O 1.20928 * 111.59967 * 0.38621 * 19 18 17 21 21 C 1.34042 * 111.56912 * 359.74497 * 20 19 18 22 22 C 1.50692 * 126.77526 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47534 * 296.78978 * 1 2 3 24 24 H 1.09005 * 109.47247 * 176.79036 * 1 2 3 25 25 H 1.09005 * 109.47130 * 56.79290 * 1 2 3 26 26 H 1.09003 * 109.46830 * 119.99513 * 2 1 3 27 27 H 1.08999 * 109.47566 * 240.00201 * 2 1 3 28 28 H 0.97003 * 120.00010 * 180.02562 * 8 7 5 29 29 H 0.97000 * 120.00283 * 60.61580 * 13 3 2 30 30 H 1.08004 * 126.80066 * 0.02810 * 18 17 14 31 31 H 1.09003 * 109.47408 * 274.63248 * 22 21 20 32 32 H 1.09003 * 109.47687 * 34.63496 * 22 21 20 33 33 H 1.09003 * 109.47128 * 154.63507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6072 1.9809 -0.8431 5 6 3.5421 1.4443 -0.1205 6 1 4.1457 1.8895 0.6566 7 6 4.1459 0.8776 -1.2229 8 7 3.4109 0.3351 -2.1689 9 14 6.0079 0.8791 -1.3719 10 1 6.5991 1.5452 -0.1836 11 1 6.4994 -0.5199 -1.4513 12 1 6.4056 1.6138 -2.5996 13 7 1.6496 2.0984 1.2505 14 16 0.6774 3.4385 1.2141 15 8 -0.4345 3.1056 0.3943 16 8 0.5473 3.8766 2.5596 17 6 1.5625 4.7021 0.3628 18 6 1.2433 5.3056 -0.8752 19 7 2.1756 6.1840 -1.1070 20 8 3.0001 6.2021 -0.2225 21 6 2.7094 5.3160 0.7403 22 6 3.5023 5.0541 1.9947 23 1 -0.3634 0.4632 0.9174 24 1 -0.3634 -1.0261 -0.0575 25 1 -0.3634 0.5628 -0.8599 26 1 1.8932 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 3.8357 -0.0639 -2.9444 29 1 1.9606 1.7478 2.0998 30 1 0.3931 5.0835 -1.5031 31 1 4.2927 4.3344 1.7813 32 1 3.9449 5.9862 2.3461 33 1 2.8431 4.6522 2.7641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187401579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -46.834640 kcal Electronic energy + Delta-G solvation = -20337.311601 eV Core-core repulsion = 17106.470260 eV Total energy + Delta-G solvation = -3230.841341 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.13405 -38.34223 -37.64594 -36.90667 -35.35331 -34.34607 -34.11704 -32.21385 -28.92526 -28.52404 -25.29559 -24.84028 -23.04512 -21.88674 -20.49140 -19.20739 -18.86219 -18.67645 -18.03363 -17.39442 -17.01686 -16.36704 -15.52436 -15.47945 -14.83760 -14.66822 -14.54286 -14.14745 -13.69599 -13.50825 -13.46694 -13.16290 -13.08139 -13.04810 -12.70289 -12.63947 -12.62182 -12.39457 -12.06192 -11.88905 -11.76153 -11.47813 -11.32005 -10.71439 -10.47760 -10.00047 -8.09112 -6.23289 -0.52337 0.08316 0.81072 1.43427 1.47976 1.55529 1.90388 2.15503 2.46487 2.74941 3.05986 3.20012 3.42005 3.46687 3.98861 4.21387 4.51389 4.56353 4.58262 4.64920 4.72512 4.74629 4.95096 5.04539 5.16840 5.41268 5.49724 5.70595 5.83320 6.10603 6.19760 6.49302 6.88282 6.96736 7.46828 8.94464 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.009715 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.698041 B = 2881.360695 C = 3852.548559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.286 3.714 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.076 0.924 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.256 1.256 11 H -0.284 1.284 12 H -0.294 1.294 13 N -1.090 6.090 14 S 2.743 3.257 15 O -0.981 6.981 16 O -0.979 6.979 17 C -0.804 4.804 18 C 0.072 3.928 19 N -0.385 5.385 20 O 0.090 5.910 21 C 0.123 3.877 22 C -0.112 4.112 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.262 0.738 29 H 0.422 0.578 30 H 0.214 0.786 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 5.951 8.112 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.181 3.819 4 H 0.036 0.964 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.180 1.180 11 H -0.210 1.210 12 H -0.221 1.221 13 N -0.853 5.853 14 S 2.828 3.172 15 O -0.971 6.971 16 O -0.969 6.969 17 C -0.892 4.892 18 C -0.110 4.110 19 N -0.093 5.093 20 O 0.033 5.967 21 C 0.056 3.944 22 C -0.169 4.169 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.258 0.742 30 H 0.231 0.769 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.566 6.963 7.116 9.972 hybrid contribution 1.104 -0.610 -0.440 1.336 sum 0.539 6.353 6.675 9.231 Atomic orbital electron populations 1.21756 0.97055 1.00430 1.00669 1.21793 0.93763 0.98845 1.02120 1.18289 0.93910 0.90355 0.79369 0.96353 1.21829 0.92160 1.37534 1.05783 0.90549 1.25617 1.01833 0.95060 0.95657 1.69996 1.36398 1.38925 1.09992 0.85662 0.81271 0.77603 0.78061 1.17963 1.20993 1.22065 1.55235 1.70642 1.43293 1.16089 1.00276 0.72840 0.72059 0.72043 1.93536 1.49418 1.83200 1.70944 1.93520 1.86298 1.82405 1.34677 1.33112 1.15470 1.27547 1.13048 1.24934 0.99719 0.92013 0.94332 1.73771 1.02218 1.22573 1.10725 1.84763 1.40695 1.47979 1.23278 1.25099 0.91577 0.85340 0.92340 1.21211 1.00857 1.07119 0.87682 0.93428 0.92775 0.94594 0.93097 0.90604 0.92907 0.74192 0.76929 0.85971 0.85054 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 9.46 71.98 0.68 -4.81 16 2 C -0.13 -5.39 5.45 30.59 0.17 -5.22 16 3 C 0.29 12.52 2.26 44.24 0.10 12.62 16 4 H 0.02 0.92 7.73 -2.39 -0.02 0.91 16 5 C -0.53 -24.90 8.84 25.60 0.23 -24.67 16 6 H 0.08 3.29 7.81 -2.91 -0.02 3.27 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -48.57 11.29 21.45 0.24 -48.33 16 9 Si 0.95 39.68 29.54 68.60 2.03 41.70 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 13 N -1.09 -38.11 4.87 -172.52 -0.84 -38.95 16 14 S 2.74 95.39 5.50 -56.49 -0.31 95.08 16 15 O -0.98 -39.36 17.13 -128.00 -2.19 -41.55 16 16 O -0.98 -33.72 16.86 -128.00 -2.16 -35.88 16 17 C -0.80 -27.45 6.31 22.40 0.14 -27.31 16 18 C 0.07 2.51 11.98 85.71 1.03 3.53 16 19 N -0.38 -13.67 12.07 -59.27 -0.72 -14.38 16 20 O 0.09 2.91 11.20 71.61 0.80 3.71 16 21 C 0.12 3.68 7.49 25.04 0.19 3.86 16 22 C -0.11 -2.29 10.33 71.23 0.74 -1.55 16 23 H 0.05 1.71 7.73 -2.39 -0.02 1.69 16 24 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 3.73 5.95 -2.39 -0.01 3.72 16 28 H 0.26 13.43 8.31 -92.71 -0.77 12.65 16 29 H 0.42 12.33 8.96 -96.75 -0.87 11.46 16 30 H 0.21 6.55 8.06 -2.91 -0.02 6.53 16 31 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.24 6.82 -2.39 -0.02 2.22 16 Total: -1.00 -62.25 299.28 0.84 -61.42 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.27 Total: 19.37 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 3.71 Total: -42.18 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -1.31 Total: -101.66 kcal Atomic # 8 Polarization: -70.17 SS G_CDS: -3.55 Total: -73.72 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 16 Polarization: 95.39 SS G_CDS: -0.31 Total: 95.08 kcal Total: -62.25 0.84 -61.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187401579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.581 kcal (2) G-P(sol) polarization free energy of solvation -62.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds