Wall clock time and date at job start Mon Mar 30 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 H 1.09004 * 109.47229 * 54.18033 * 3 2 1 5 5 C 1.50699 * 109.47250 * 174.17819 * 3 2 1 6 6 H 1.08007 * 119.99579 * 119.99834 * 5 3 2 7 7 C 1.37873 * 120.00647 * 300.00461 * 5 3 2 8 8 N 1.31526 * 119.99435 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00373 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47224 * 90.00165 * 9 7 5 11 11 H 1.48502 * 109.47039 * 209.99748 * 9 7 5 12 12 H 1.48499 * 109.47138 * 329.99421 * 9 7 5 13 13 N 1.46500 * 109.47366 * 294.18111 * 3 2 1 14 14 S 1.65605 * 120.00169 * 117.28672 * 13 3 2 15 15 O 1.42095 * 106.40446 * 176.60866 * 14 13 3 16 16 O 1.42104 * 106.40047 * 309.53580 * 14 13 3 17 17 C 1.76203 * 107.21523 * 63.07287 * 14 13 3 18 18 C 1.41381 * 128.00800 * 108.88713 * 17 14 13 19 19 N 1.30177 * 106.39378 * 179.89033 * 18 17 14 20 20 O 1.20913 * 111.60789 * 0.39848 * 19 18 17 21 21 C 1.34046 * 111.56792 * 359.73453 * 20 19 18 22 22 C 1.50701 * 126.77932 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.46858 * 298.09552 * 1 2 3 24 24 H 1.08995 * 109.47167 * 178.08985 * 1 2 3 25 25 H 1.09004 * 109.46825 * 58.09045 * 1 2 3 26 26 H 1.09001 * 109.46990 * 119.99864 * 2 1 3 27 27 H 1.09001 * 109.47522 * 240.00139 * 2 1 3 28 28 H 0.96996 * 119.99498 * 180.02562 * 8 7 5 29 29 H 0.96996 * 120.00256 * 297.28994 * 13 3 2 30 30 H 1.07997 * 126.79843 * 0.03664 * 18 17 14 31 31 H 1.08995 * 109.47725 * 269.87900 * 22 21 20 32 32 H 1.09000 * 109.46337 * 29.87907 * 22 21 20 33 33 H 1.09000 * 109.46809 * 149.87251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 0.8333 5 6 3.5401 1.4449 0.1441 6 1 4.1558 1.8858 -0.6260 7 6 4.1266 0.8843 1.2588 8 7 3.3767 0.3477 2.1968 9 14 5.9860 0.8868 1.4371 10 1 6.4144 2.1230 2.1396 11 1 6.4096 -0.3006 2.2219 12 1 6.6123 0.8397 0.0914 13 7 1.6694 2.0915 -1.2600 14 16 0.6550 3.4005 -1.2502 15 8 0.5565 3.8420 -2.5972 16 8 -0.4727 3.0282 -0.4697 17 6 1.4711 4.6861 -0.3637 18 6 2.0253 5.8812 -0.8768 19 7 2.5188 6.5243 0.1418 20 8 2.3605 5.9135 1.1732 21 6 1.7179 4.7554 0.9664 22 6 1.3447 3.7321 2.0078 23 1 -0.3633 0.4840 0.9066 24 1 -0.3633 -1.0270 -0.0343 25 1 -0.3633 0.5432 -0.8724 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7893 -0.0463 2.9812 29 1 2.0182 1.7546 -2.1001 30 1 2.0350 6.1989 -1.9089 31 1 2.1542 3.0101 2.1145 32 1 1.1744 4.2306 2.9621 33 1 0.4353 3.2158 1.7003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187401580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:55 Heat of formation + Delta-G solvation = -21.489739 kcal Electronic energy + Delta-G solvation = -20561.260161 eV Core-core repulsion = 17331.517857 eV Total energy + Delta-G solvation = -3229.742304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.77891 -36.91640 -36.02898 -35.38906 -34.00347 -32.98509 -32.35532 -30.60352 -27.69714 -26.72787 -23.91706 -23.09365 -21.72707 -20.20926 -18.99400 -17.73586 -17.44511 -17.16168 -16.36152 -15.97720 -15.35133 -14.73134 -14.24682 -13.92485 -13.26923 -13.20276 -13.01289 -12.88729 -12.42691 -11.87189 -11.68271 -11.59016 -11.55786 -11.31974 -11.25282 -11.10726 -10.91713 -10.85363 -10.57833 -10.36194 -10.07057 -9.76417 -9.57885 -9.27992 -8.62712 -8.36120 -6.26835 -4.35570 0.94206 1.43063 2.14100 3.15927 3.19435 3.24616 3.27758 3.68017 4.15066 4.24567 4.37277 4.69744 4.80921 5.02705 5.40005 5.49702 5.77035 5.87222 6.01901 6.13204 6.28005 6.29629 6.44176 6.58170 6.83748 7.02741 7.14678 7.49759 7.57666 7.74125 7.89126 8.14603 8.27948 8.69384 9.32085 10.76580 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.009759 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.742806 B = 2868.495332 C = 3759.002903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.261 3.739 4 H 0.060 0.940 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 N -1.097 6.097 14 S 2.724 3.276 15 O -0.980 6.980 16 O -0.957 6.957 17 C -0.792 4.792 18 C 0.078 3.922 19 N -0.372 5.372 20 O 0.088 5.912 21 C 0.133 3.867 22 C -0.124 4.124 23 H 0.050 0.950 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.105 0.895 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.410 0.590 30 H 0.200 0.800 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 3.856 -1.325 5.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.158 3.842 4 H 0.078 0.922 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.858 5.858 14 S 2.808 3.192 15 O -0.970 6.970 16 O -0.947 6.947 17 C -0.880 4.880 18 C -0.104 4.104 19 N -0.080 5.080 20 O 0.031 5.969 21 C 0.067 3.933 22 C -0.180 4.180 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.244 0.756 30 H 0.217 0.783 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.742 5.121 -1.097 6.437 hybrid contribution 1.564 -0.453 -0.288 1.653 sum -2.179 4.668 -1.385 5.334 Atomic orbital electron populations 1.21838 0.98388 0.99210 1.01114 1.21918 0.92523 0.99382 1.03038 1.19022 0.95209 0.90816 0.79194 0.92242 1.21480 0.91313 1.38688 1.05654 0.91890 1.24880 0.98282 0.94710 0.95665 1.69839 1.34992 1.38116 1.09387 0.86578 0.85352 0.77728 0.78346 1.20591 1.20992 1.19879 1.55517 1.68429 1.44922 1.16968 1.00956 0.73524 0.72267 0.72469 1.93509 1.86728 1.82373 1.34397 1.93571 1.46995 1.81942 1.72196 1.33150 1.27997 1.20852 1.05961 1.24547 0.95257 0.90046 1.00579 1.73782 1.21193 1.19965 0.93052 1.84801 1.56453 1.26171 1.29510 1.24605 0.86837 0.87032 0.94874 1.21362 1.06301 0.95070 0.95290 0.93113 0.94802 0.94164 0.87736 0.94293 0.92365 0.75623 0.78317 0.84299 0.89007 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.41 37.16 0.35 -2.43 16 2 C -0.13 -2.67 5.45 -26.73 -0.15 -2.82 16 3 C 0.26 5.46 2.21 -69.08 -0.15 5.31 16 4 H 0.06 1.23 3.15 -51.93 -0.16 1.07 16 5 C -0.53 -12.38 8.76 -34.44 -0.30 -12.68 16 6 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 7 C 0.07 1.60 5.29 -17.82 -0.09 1.51 16 8 N -0.89 -21.21 11.29 55.43 0.63 -20.58 16 9 Si 0.89 19.23 29.54 -169.99 -5.02 14.21 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 N -1.10 -20.24 4.82 -5.88 -0.03 -20.26 16 14 S 2.72 49.12 5.58 -107.50 -0.60 48.52 16 15 O -0.98 -18.80 17.87 -57.17 -1.02 -19.82 16 16 O -0.96 -18.41 15.06 -57.17 -0.86 -19.27 16 17 C -0.79 -14.03 6.30 -39.38 -0.25 -14.28 16 18 C 0.08 1.31 11.99 -17.06 -0.20 1.10 16 19 N -0.37 -6.58 12.07 30.35 0.37 -6.22 16 20 O 0.09 1.53 11.20 17.16 0.19 1.73 16 21 C 0.13 2.29 7.49 -35.30 -0.26 2.03 16 22 C -0.12 -1.95 8.44 36.01 0.30 -1.65 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.73 6.98 -51.93 -0.36 0.37 16 26 H 0.10 2.40 5.94 -51.93 -0.31 2.09 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 29 H 0.41 6.86 8.96 -34.47 -0.31 6.55 16 30 H 0.20 2.72 8.06 -52.49 -0.42 2.29 16 31 H 0.14 2.50 6.84 -51.93 -0.36 2.15 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 1.85 5.98 -51.93 -0.31 1.54 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -27.30 288.69 -6.22 -33.53 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.47 Total: 7.73 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -0.76 Total: -23.91 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.96 Total: -47.06 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.69 Total: -37.37 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.60 Total: 48.52 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.30 -6.22 -33.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187401580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.037 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds