Wall clock time and date at job start Mon Mar 30 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 H 1.09004 * 109.47229 * 54.18033 * 3 2 1 5 5 C 1.50699 * 109.47250 * 174.17819 * 3 2 1 6 6 H 1.08007 * 119.99579 * 119.99834 * 5 3 2 7 7 C 1.37873 * 120.00647 * 300.00461 * 5 3 2 8 8 N 1.31526 * 119.99435 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00373 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47224 * 90.00165 * 9 7 5 11 11 H 1.48502 * 109.47039 * 209.99748 * 9 7 5 12 12 H 1.48499 * 109.47138 * 329.99421 * 9 7 5 13 13 N 1.46500 * 109.47366 * 294.18111 * 3 2 1 14 14 S 1.65605 * 120.00169 * 117.28672 * 13 3 2 15 15 O 1.42095 * 106.40446 * 176.60866 * 14 13 3 16 16 O 1.42104 * 106.40047 * 309.53580 * 14 13 3 17 17 C 1.76203 * 107.21523 * 63.07287 * 14 13 3 18 18 C 1.41381 * 128.00800 * 108.88713 * 17 14 13 19 19 N 1.30177 * 106.39378 * 179.89033 * 18 17 14 20 20 O 1.20913 * 111.60789 * 0.39848 * 19 18 17 21 21 C 1.34046 * 111.56792 * 359.73453 * 20 19 18 22 22 C 1.50701 * 126.77932 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.46858 * 298.09552 * 1 2 3 24 24 H 1.08995 * 109.47167 * 178.08985 * 1 2 3 25 25 H 1.09004 * 109.46825 * 58.09045 * 1 2 3 26 26 H 1.09001 * 109.46990 * 119.99864 * 2 1 3 27 27 H 1.09001 * 109.47522 * 240.00139 * 2 1 3 28 28 H 0.96996 * 119.99498 * 180.02562 * 8 7 5 29 29 H 0.96996 * 120.00256 * 297.28994 * 13 3 2 30 30 H 1.07997 * 126.79843 * 0.03664 * 18 17 14 31 31 H 1.08995 * 109.47725 * 269.87900 * 22 21 20 32 32 H 1.09000 * 109.46337 * 29.87907 * 22 21 20 33 33 H 1.09000 * 109.46809 * 149.87251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 0.8333 5 6 3.5401 1.4449 0.1441 6 1 4.1558 1.8858 -0.6260 7 6 4.1266 0.8843 1.2588 8 7 3.3767 0.3477 2.1968 9 14 5.9860 0.8868 1.4371 10 1 6.4144 2.1230 2.1396 11 1 6.4096 -0.3006 2.2219 12 1 6.6123 0.8397 0.0914 13 7 1.6694 2.0915 -1.2600 14 16 0.6550 3.4005 -1.2502 15 8 0.5565 3.8420 -2.5972 16 8 -0.4727 3.0282 -0.4697 17 6 1.4711 4.6861 -0.3637 18 6 2.0253 5.8812 -0.8768 19 7 2.5188 6.5243 0.1418 20 8 2.3605 5.9135 1.1732 21 6 1.7179 4.7554 0.9664 22 6 1.3447 3.7321 2.0078 23 1 -0.3633 0.4840 0.9066 24 1 -0.3633 -1.0270 -0.0343 25 1 -0.3633 0.5432 -0.8724 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7893 -0.0463 2.9812 29 1 2.0182 1.7546 -2.1001 30 1 2.0350 6.1989 -1.9089 31 1 2.1542 3.0101 2.1145 32 1 1.1744 4.2306 2.9621 33 1 0.4353 3.2158 1.7003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187401580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:55 Heat of formation + Delta-G solvation = -40.089323 kcal Electronic energy + Delta-G solvation = -20562.066700 eV Core-core repulsion = 17331.517857 eV Total energy + Delta-G solvation = -3230.548842 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.12809 -38.43705 -37.62462 -36.89452 -35.35465 -34.32306 -34.10645 -32.16325 -29.03293 -28.42362 -25.28963 -24.76857 -23.06533 -21.82805 -20.45349 -19.18596 -18.83157 -18.71731 -17.96962 -17.35806 -17.00664 -16.33199 -15.70184 -15.36936 -14.79935 -14.70998 -14.53937 -14.27560 -13.71723 -13.46733 -13.22408 -13.12569 -13.09683 -12.99254 -12.70231 -12.66525 -12.51796 -12.37150 -12.05064 -11.92816 -11.72692 -11.41922 -11.18501 -10.68983 -10.40737 -9.97702 -8.07113 -6.18828 -0.50990 0.05577 0.80619 1.43359 1.49934 1.54540 1.85074 2.21584 2.48469 2.71943 3.00269 3.20583 3.41372 3.48409 4.01109 4.18521 4.51918 4.57834 4.60591 4.71980 4.74717 4.78698 5.00439 5.12783 5.25551 5.47962 5.54866 5.74777 5.89557 6.14132 6.20977 6.49070 6.89222 6.93135 7.49640 8.94912 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.009759 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.742806 B = 2868.495332 C = 3759.002903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.261 3.739 4 H 0.064 0.936 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.037 3.963 8 N -0.897 5.897 9 Si 0.934 3.066 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.278 1.278 13 N -1.096 6.096 14 S 2.744 3.256 15 O -0.988 6.988 16 O -0.968 6.968 17 C -0.808 4.808 18 C 0.080 3.920 19 N -0.384 5.384 20 O 0.083 5.917 21 C 0.133 3.867 22 C -0.123 4.123 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.417 0.583 30 H 0.227 0.773 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 4.186 -1.507 5.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.157 3.843 4 H 0.082 0.918 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.164 4.164 8 N -0.536 5.536 9 Si 0.762 3.238 10 H -0.208 1.208 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.858 5.858 14 S 2.828 3.172 15 O -0.979 6.979 16 O -0.958 6.958 17 C -0.896 4.896 18 C -0.102 4.102 19 N -0.093 5.093 20 O 0.028 5.972 21 C 0.066 3.934 22 C -0.179 4.179 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.252 0.748 30 H 0.243 0.757 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.942 5.438 -1.285 6.838 hybrid contribution 1.622 -0.535 -0.244 1.726 sum -2.319 4.903 -1.530 5.635 Atomic orbital electron populations 1.21778 0.96797 1.00434 1.01069 1.21826 0.93943 0.99021 1.01945 1.18920 0.93999 0.91226 0.80198 0.91839 1.21665 0.92618 1.38340 1.05314 0.92754 1.25303 1.00463 0.94879 0.95787 1.69904 1.35663 1.38475 1.09531 0.85932 0.82724 0.77372 0.77788 1.20830 1.21016 1.20330 1.55393 1.68469 1.45239 1.16661 1.00298 0.73026 0.71893 0.71979 1.93495 1.86868 1.82475 1.35048 1.93552 1.47707 1.82195 1.72380 1.33139 1.28833 1.21252 1.06340 1.25035 0.94158 0.89400 1.01647 1.73776 1.21855 1.20398 0.93306 1.84792 1.56560 1.26213 1.29616 1.24873 0.86275 0.87085 0.95131 1.21367 1.05222 0.94564 0.96751 0.93470 0.93043 0.93793 0.89880 0.94311 0.92417 0.74796 0.75666 0.86309 0.85637 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.41 71.98 0.68 -4.49 16 2 C -0.13 -5.19 5.45 30.59 0.17 -5.02 16 3 C 0.26 10.70 2.21 44.24 0.10 10.80 16 4 H 0.06 2.59 3.15 -2.38 -0.01 2.58 16 5 C -0.54 -24.82 8.76 25.60 0.22 -24.59 16 6 H 0.05 2.55 7.81 -2.91 -0.02 2.52 16 7 C 0.04 1.75 5.29 84.65 0.45 2.19 16 8 N -0.90 -42.63 11.29 21.45 0.24 -42.39 16 9 Si 0.93 38.99 29.54 68.60 2.03 41.02 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 N -1.10 -39.22 4.82 -172.52 -0.83 -40.05 16 14 S 2.74 95.03 5.58 -56.49 -0.32 94.71 16 15 O -0.99 -36.22 17.87 -128.00 -2.29 -38.51 16 16 O -0.97 -35.86 15.06 -128.00 -1.93 -37.79 16 17 C -0.81 -27.40 6.30 22.40 0.14 -27.26 16 18 C 0.08 2.53 11.99 85.71 1.03 3.56 16 19 N -0.38 -13.00 12.07 -59.26 -0.72 -13.72 16 20 O 0.08 2.81 11.20 71.59 0.80 3.61 16 21 C 0.13 4.41 7.49 25.04 0.19 4.60 16 22 C -0.12 -3.72 8.44 71.24 0.60 -3.12 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.04 1.53 6.98 -2.38 -0.02 1.51 16 26 H 0.08 3.78 5.94 -2.39 -0.01 3.77 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.27 12.26 8.31 -92.71 -0.77 11.49 16 29 H 0.42 13.50 8.96 -96.75 -0.87 12.63 16 30 H 0.23 5.62 8.06 -2.91 -0.02 5.60 16 31 H 0.12 4.21 6.84 -2.39 -0.02 4.19 16 32 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.11 3.51 5.98 -2.39 -0.01 3.50 16 Total: -1.00 -55.06 288.69 0.85 -54.21 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.29 Total: 22.25 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 3.57 Total: -43.34 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -1.31 Total: -96.16 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -3.41 Total: -72.69 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: 95.03 SS G_CDS: -0.32 Total: 94.71 kcal Total: -55.06 0.85 -54.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187401580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.121 kcal (2) G-P(sol) polarization free energy of solvation -55.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds