Wall clock time and date at job start Mon Mar 30 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.40852 * 126.72281 * 75.00081 * 5 2 1 7 7 C 1.36682 * 103.91594 * 180.02562 * 6 5 2 8 8 N 1.38247 * 126.88985 * 180.02562 * 7 6 5 9 9 S 1.65602 * 119.99620 * 134.99636 * 8 7 6 10 10 O 1.42105 * 106.40080 * 178.53940 * 9 8 7 11 11 O 1.42102 * 106.40502 * 311.46090 * 9 8 7 12 12 C 1.76198 * 107.21896 * 65.00418 * 9 8 7 13 13 H 1.08001 * 119.99799 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00452 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00165 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 119.99665 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47355 * 90.00233 * 16 14 12 18 18 H 1.48502 * 109.47257 * 210.00434 * 16 14 12 19 19 H 1.48501 * 109.47127 * 330.00265 * 16 14 12 20 20 O 1.34254 * 106.21864 * 359.97438 * 7 6 5 21 21 N 1.20903 * 111.46677 * 359.71001 * 20 7 6 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 1.08002 * 128.04596 * 0.02562 * 6 5 2 32 32 H 0.96998 * 120.00303 * 314.99968 * 8 7 6 33 33 H 0.96995 * 119.99892 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 2.0377 -0.2118 -2.5477 7 6 2.5865 -1.2264 -3.2809 8 7 2.8144 -1.2356 -4.6445 9 16 4.2584 -1.7872 -5.2388 10 8 4.1687 -1.7014 -6.6544 11 8 5.2755 -1.1429 -4.4840 12 6 4.3613 -3.5027 -4.8499 13 1 3.5562 -3.9843 -4.3150 14 6 5.4702 -4.2299 -5.2275 15 7 5.5471 -5.5102 -4.9368 16 14 6.8630 -3.3967 -6.1521 17 1 7.8518 -2.8625 -5.1813 18 1 7.5263 -4.3832 -7.0421 19 1 6.3184 -2.2818 -6.9680 20 8 2.8608 -2.2117 -2.4113 21 7 2.5528 -1.9047 -1.2832 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 -1.7488 1.2493 29 1 3.1300 -0.7207 1.2495 30 1 1.6766 -0.2073 2.1393 31 1 1.6892 0.7488 -2.8972 32 1 2.1287 -0.9189 -5.2530 33 1 6.3270 -6.0219 -5.2028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935147.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:33 Heat of formation + Delta-G solvation = -26.220374 kcal Electronic energy + Delta-G solvation = -19705.707030 eV Core-core repulsion = 16475.759591 eV Total energy + Delta-G solvation = -3229.947440 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.50501 -37.45954 -35.95439 -35.46938 -34.71060 -33.09783 -32.33706 -29.56736 -27.35640 -27.24895 -26.50895 -23.51157 -22.19278 -20.15351 -18.94834 -17.91642 -17.67963 -17.03494 -16.65421 -15.79351 -15.17430 -14.70095 -14.26038 -14.15484 -13.96351 -13.59757 -13.27650 -12.96410 -12.45757 -12.25398 -12.05554 -11.74048 -11.61904 -11.48746 -11.30195 -11.15648 -11.00559 -10.97153 -10.87767 -10.67016 -10.45319 -9.98470 -9.76011 -9.26887 -9.13422 -8.45752 -6.85110 -5.42405 1.51758 1.87399 2.51596 2.99086 3.06096 3.14025 3.20956 3.89534 4.14259 4.29004 4.53037 4.65409 4.90045 5.04944 5.06861 5.24364 5.38007 5.50900 5.54092 5.62586 5.69636 5.78914 5.82047 5.85277 5.95771 5.99721 6.21026 6.22618 6.28595 6.37006 7.15765 7.41868 8.16976 8.60720 8.64634 10.26947 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.005660 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.073274 B = 4946.054384 C = 5253.896760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.012 3.988 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.037 3.963 6 C -0.255 4.255 7 C 0.233 3.767 8 N -1.010 6.010 9 S 2.653 3.347 10 O -0.988 6.988 11 O -0.989 6.989 12 C -1.007 5.007 13 H 0.129 0.871 14 C 0.156 3.844 15 N -0.813 5.813 16 Si 0.800 3.200 17 H -0.244 1.244 18 H -0.252 1.252 19 H -0.221 1.221 20 O 0.104 5.896 21 N -0.355 5.355 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.171 0.829 32 H 0.431 0.569 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 10.943 7.312 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.122 4.122 6 C -0.282 4.282 7 C 0.071 3.929 8 N -0.764 5.764 9 S 2.756 3.244 10 O -0.978 6.978 11 O -0.979 6.979 12 C -1.143 5.143 13 H 0.147 0.853 14 C -0.065 4.065 15 N -0.442 5.442 16 Si 0.619 3.381 17 H -0.168 1.168 18 H -0.176 1.176 19 H -0.144 1.144 20 O 0.042 5.958 21 N -0.062 5.062 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.188 0.812 32 H 0.269 0.731 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.898 10.278 7.835 15.146 hybrid contribution -0.103 0.257 -1.012 1.049 sum -8.000 10.535 6.822 14.884 Atomic orbital electron populations 1.21857 0.93092 1.02366 1.02141 1.18946 0.95592 0.94536 0.89825 1.21877 1.01779 0.93863 1.02134 1.21813 1.01753 1.00603 0.95499 1.23002 1.00924 0.92343 0.95938 1.21942 1.13417 1.01075 0.91814 1.20147 0.99670 0.88146 0.84935 1.52901 1.37147 1.79448 1.06898 1.02345 0.70764 0.77942 0.73342 1.93526 1.84607 1.89405 1.30282 1.93464 1.53723 1.78338 1.72388 1.30164 1.15275 1.16203 1.52624 0.85299 1.24372 0.96435 0.94367 0.91299 1.69972 1.29192 1.06662 1.38358 0.87895 0.84832 0.82910 0.82429 1.16806 1.17569 1.14366 1.85099 1.62815 1.36120 1.11786 1.73945 1.17312 1.16473 0.98436 0.92354 0.92131 0.91816 0.91856 0.92061 0.92045 0.91904 0.92132 0.92214 0.81172 0.73073 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.46 37.16 0.31 -1.01 16 2 C 0.01 0.14 0.97 -155.66 -0.15 -0.01 16 3 C -0.14 -1.37 8.22 37.16 0.31 -1.07 16 4 C -0.14 -1.61 8.06 37.16 0.30 -1.31 16 5 C 0.04 0.58 5.69 -82.22 -0.47 0.11 16 6 C -0.26 -3.96 10.51 -39.16 -0.41 -4.37 16 7 C 0.23 4.42 7.56 -15.22 -0.12 4.31 16 8 N -1.01 -18.97 5.84 30.82 0.18 -18.79 16 9 S 2.65 64.78 4.21 -107.50 -0.45 64.33 16 10 O -0.99 -25.12 16.02 -57.17 -0.92 -26.03 16 11 O -0.99 -26.25 16.54 -57.17 -0.95 -27.20 16 12 C -1.01 -27.82 9.83 30.60 0.30 -27.52 16 13 H 0.13 3.63 7.94 -52.49 -0.42 3.21 16 14 C 0.16 4.43 5.47 -17.82 -0.10 4.33 16 15 N -0.81 -23.29 13.96 55.43 0.77 -22.52 16 16 Si 0.80 20.15 26.54 -169.99 -4.51 15.64 16 17 H -0.24 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.25 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.22 -5.60 5.61 56.52 0.32 -5.29 16 20 O 0.10 2.22 10.71 16.61 0.18 2.40 16 21 N -0.36 -6.86 11.45 33.48 0.38 -6.48 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.56 7.71 -51.93 -0.40 0.15 16 28 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.17 2.00 7.90 -52.49 -0.41 1.59 16 32 H 0.43 6.19 8.95 -34.47 -0.31 5.88 16 33 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -32.72 295.79 -5.02 -37.73 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.14 Total: 2.98 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -0.02 Total: -26.53 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 1.34 Total: -47.78 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -1.68 Total: -50.83 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.51 Total: 15.64 kcal Atomic # 16 Polarization: 64.78 SS G_CDS: -0.45 Total: 64.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.72 -5.02 -37.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935147.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.513 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds