Wall clock time and date at job start Mon Mar 30 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.40852 * 126.72281 * 75.00081 * 5 2 1 7 7 C 1.36682 * 103.91594 * 180.02562 * 6 5 2 8 8 N 1.38247 * 126.88985 * 180.02562 * 7 6 5 9 9 S 1.65602 * 119.99620 * 134.99636 * 8 7 6 10 10 O 1.42105 * 106.40080 * 178.53940 * 9 8 7 11 11 O 1.42102 * 106.40502 * 311.46090 * 9 8 7 12 12 C 1.76198 * 107.21896 * 65.00418 * 9 8 7 13 13 H 1.08001 * 119.99799 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00452 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00165 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 119.99665 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47355 * 90.00233 * 16 14 12 18 18 H 1.48502 * 109.47257 * 210.00434 * 16 14 12 19 19 H 1.48501 * 109.47127 * 330.00265 * 16 14 12 20 20 O 1.34254 * 106.21864 * 359.97438 * 7 6 5 21 21 N 1.20903 * 111.46677 * 359.71001 * 20 7 6 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 1.08002 * 128.04596 * 0.02562 * 6 5 2 32 32 H 0.96998 * 120.00303 * 314.99968 * 8 7 6 33 33 H 0.96995 * 119.99892 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 2.0377 -0.2118 -2.5477 7 6 2.5865 -1.2264 -3.2809 8 7 2.8144 -1.2356 -4.6445 9 16 4.2584 -1.7872 -5.2388 10 8 4.1687 -1.7014 -6.6544 11 8 5.2755 -1.1429 -4.4840 12 6 4.3613 -3.5027 -4.8499 13 1 3.5562 -3.9843 -4.3150 14 6 5.4702 -4.2299 -5.2275 15 7 5.5471 -5.5102 -4.9368 16 14 6.8630 -3.3967 -6.1521 17 1 7.8518 -2.8625 -5.1813 18 1 7.5263 -4.3832 -7.0421 19 1 6.3184 -2.2818 -6.9680 20 8 2.8608 -2.2117 -2.4113 21 7 2.5528 -1.9047 -1.2832 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 -1.7488 1.2493 29 1 3.1300 -0.7207 1.2495 30 1 1.6766 -0.2073 2.1393 31 1 1.6892 0.7488 -2.8972 32 1 2.1287 -0.9189 -5.2530 33 1 6.3270 -6.0219 -5.2028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935147.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:33 Heat of formation + Delta-G solvation = -52.327787 kcal Electronic energy + Delta-G solvation = -19706.839133 eV Core-core repulsion = 16475.759591 eV Total energy + Delta-G solvation = -3231.079542 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.88809 -38.44342 -37.94625 -37.03727 -36.74906 -35.23492 -33.59814 -30.97642 -28.65547 -28.14239 -28.08963 -24.77480 -23.53523 -21.71459 -20.66491 -19.71598 -19.10201 -18.72531 -18.27115 -17.46448 -16.83251 -16.22726 -15.76385 -15.53523 -15.05028 -15.01970 -14.92956 -14.58693 -13.90506 -13.50873 -13.19153 -13.11036 -13.05975 -13.01141 -12.92504 -12.70967 -12.54246 -12.26566 -12.16038 -12.05810 -11.90291 -11.59304 -11.37238 -11.19744 -10.99763 -9.92971 -8.99068 -7.59209 -0.33237 0.41582 1.03523 1.13667 1.17709 1.27076 1.52424 1.86496 2.37467 2.56870 3.04266 3.11748 3.54059 3.90219 4.04314 4.07377 4.12510 4.27785 4.42026 4.65653 4.79808 4.82013 4.91795 5.01589 5.02939 5.04903 5.17628 5.32430 5.33305 5.43267 5.46779 5.77985 5.98675 6.48064 7.22138 8.18969 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.005660 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.073274 B = 4946.054384 C = 5253.896760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.046 3.954 6 C -0.226 4.226 7 C 0.196 3.804 8 N -0.994 5.994 9 S 2.686 3.314 10 O -0.998 6.998 11 O -1.011 7.011 12 C -1.033 5.033 13 H 0.107 0.893 14 C 0.109 3.891 15 N -0.848 5.848 16 Si 0.825 3.175 17 H -0.241 1.241 18 H -0.215 1.215 19 H -0.223 1.223 20 O 0.055 5.945 21 N -0.385 5.385 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.215 0.785 32 H 0.451 0.549 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 13.604 7.684 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.006 3.994 3 C -0.195 4.195 4 C -0.197 4.197 5 C -0.114 4.114 6 C -0.252 4.252 7 C 0.036 3.964 8 N -0.753 5.753 9 S 2.787 3.213 10 O -0.989 6.989 11 O -1.001 7.001 12 C -1.167 5.167 13 H 0.125 0.875 14 C -0.108 4.108 15 N -0.478 5.478 16 Si 0.641 3.359 17 H -0.164 1.164 18 H -0.137 1.137 19 H -0.145 1.145 20 O -0.001 6.001 21 N -0.097 5.097 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.294 0.706 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.881 12.898 8.151 17.654 hybrid contribution 0.059 -0.518 -0.979 1.109 sum -8.822 12.380 7.172 16.809 Atomic orbital electron populations 1.21859 0.90964 1.02114 1.04140 1.19273 0.97175 0.95239 0.87689 1.21907 1.00853 0.92437 1.04293 1.21829 1.00604 1.00201 0.97041 1.23898 0.98553 0.91146 0.97754 1.22533 1.10515 1.01358 0.90814 1.20583 1.01986 0.89169 0.84709 1.52162 1.36484 1.79071 1.07624 1.01169 0.71398 0.76056 0.72658 1.93502 1.85423 1.89146 1.30781 1.93431 1.55772 1.77954 1.72933 1.30703 1.14778 1.18893 1.52291 0.87495 1.25176 0.98512 0.95044 0.92094 1.70008 1.30532 1.07714 1.39505 0.87492 0.82911 0.83179 0.82284 1.16416 1.13661 1.14485 1.85051 1.64456 1.37892 1.12746 1.73972 1.19205 1.18603 0.97934 0.93768 0.90978 0.89031 0.89063 0.93597 0.90646 0.93603 0.93964 0.89054 0.76828 0.70624 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.46 71.98 0.61 -1.49 16 2 C 0.01 0.15 0.97 -52.93 -0.05 0.10 16 3 C -0.14 -2.19 8.22 71.98 0.59 -1.60 16 4 C -0.14 -3.02 8.06 71.98 0.58 -2.44 16 5 C 0.05 1.39 5.69 43.41 0.25 1.64 16 6 C -0.23 -6.47 10.51 22.55 0.24 -6.24 16 7 C 0.20 7.38 7.56 83.32 0.63 8.01 16 8 N -0.99 -36.69 5.84 -166.78 -0.97 -37.67 16 9 S 2.69 131.07 4.21 -56.49 -0.24 130.84 16 10 O -1.00 -50.01 16.02 -128.00 -2.05 -52.06 16 11 O -1.01 -53.53 16.54 -128.00 -2.12 -55.65 16 12 C -1.03 -58.78 9.83 67.73 0.67 -58.11 16 13 H 0.11 6.37 7.94 -2.91 -0.02 6.35 16 14 C 0.11 6.32 5.47 84.66 0.46 6.78 16 15 N -0.85 -49.65 13.96 21.45 0.30 -49.35 16 16 Si 0.83 40.52 26.54 68.60 1.82 42.34 16 17 H -0.24 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.21 -9.21 7.11 99.48 0.71 -8.51 16 19 H -0.22 -10.94 5.61 99.48 0.56 -10.38 16 20 O 0.06 2.44 10.71 69.62 0.75 3.18 16 21 N -0.38 -15.15 11.45 -48.93 -0.56 -15.72 16 22 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.00 7.71 -2.39 -0.02 0.98 16 28 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.21 4.02 7.90 -2.91 -0.02 3.99 16 32 H 0.45 12.29 8.95 -96.75 -0.87 11.42 16 33 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -72.84 295.79 1.01 -71.83 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.12 Total: 15.61 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 3.97 Total: -53.36 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -1.24 Total: -102.73 kcal Atomic # 8 Polarization: -101.10 SS G_CDS: -3.42 Total: -104.52 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.82 Total: 42.34 kcal Atomic # 16 Polarization: 131.07 SS G_CDS: -0.24 Total: 130.84 kcal Total: -72.84 1.01 -71.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935147.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.502 kcal (2) G-P(sol) polarization free energy of solvation -72.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds