Wall clock time and date at job start Mon Mar 30 2020 01:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46900 * 124.35704 * 2 1 4 4 C 1.54758 * 105.55178 * 196.75889 * 3 2 1 5 5 C 1.53462 * 101.42149 * 335.66735 * 4 3 2 6 6 C 1.52259 * 116.16868 * 252.24990 * 5 4 3 7 7 N 1.47300 * 87.65632 * 218.14765 * 6 5 4 8 8 S 1.65608 * 135.91089 * 206.03114 * 7 6 5 9 9 O 1.42104 * 106.39724 * 203.53875 * 8 7 6 10 10 O 1.42097 * 106.40199 * 336.45787 * 8 7 6 11 11 C 1.76195 * 107.21632 * 90.00044 * 8 7 6 12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47022 * 90.00022 * 15 13 11 17 17 H 1.48503 * 109.47301 * 209.99571 * 15 13 11 18 18 H 1.48496 * 109.47405 * 329.99823 * 15 13 11 19 19 C 1.47301 * 88.17220 * 26.28594 * 7 6 5 20 20 C 1.34817 * 124.36264 * 179.97438 * 2 1 3 21 21 O 1.21285 * 125.19882 * 358.85215 * 20 2 1 22 22 H 1.09002 * 109.46814 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47170 * 300.01815 * 1 2 3 24 24 H 1.08998 * 109.47135 * 60.01841 * 1 2 3 25 25 H 1.09003 * 110.23188 * 315.77945 * 3 2 1 26 26 H 1.08998 * 110.23219 * 77.66136 * 3 2 1 27 27 H 1.08996 * 111.03663 * 217.62359 * 4 3 2 28 28 H 1.09009 * 111.03305 * 93.70112 * 4 3 2 29 29 H 1.09002 * 113.51989 * 103.45233 * 6 5 4 30 30 H 1.08994 * 113.52125 * 332.84346 * 6 5 4 31 31 H 0.96997 * 119.99891 * 180.02562 * 14 13 11 32 32 H 1.09004 * 113.51599 * 88.41148 * 19 7 6 33 33 H 1.08999 * 113.51901 * 219.01041 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2127 0.0000 4 6 3.7067 0.7496 -0.4299 5 6 3.6770 -0.7309 -0.0268 6 6 4.5138 -1.1134 1.1863 7 7 4.8548 -2.3613 0.4820 8 16 5.3070 -3.8917 0.9248 9 8 6.0032 -4.4413 -0.1855 10 8 5.8761 -3.7823 2.2222 11 6 3.8327 -4.8392 1.1063 12 1 2.8708 -4.3807 0.9304 13 6 3.9069 -6.1663 1.4729 14 7 5.0781 -6.7250 1.6866 15 14 2.3438 -7.1707 1.6661 16 1 1.9998 -7.8056 0.3684 17 1 2.5556 -8.2238 2.6915 18 1 1.2334 -6.2815 2.0918 19 6 4.6242 -1.6520 -0.7882 20 6 2.2260 -1.1129 0.0005 21 8 1.8026 -2.2493 0.0209 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8898 24 1 -0.3633 0.5135 -0.8901 25 1 1.9017 1.9376 -0.7133 26 1 2.3264 1.6472 0.9991 27 1 4.4790 1.2890 0.1184 28 1 3.8440 0.8595 -1.5057 29 1 3.9240 -1.2709 2.0894 30 1 5.3693 -0.4579 1.3489 31 1 5.1303 -7.6587 1.9442 32 1 5.5103 -1.1450 -1.1703 33 1 4.1274 -2.2616 -1.5429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:59 Heat of formation + Delta-G solvation = -72.748895 kcal Electronic energy + Delta-G solvation = -20127.091544 eV Core-core repulsion = 16895.126477 eV Total energy + Delta-G solvation = -3231.965068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08420 -37.67726 -36.16201 -35.10645 -33.87488 -32.93358 -31.78167 -27.47897 -26.86727 -25.92819 -25.81436 -23.49063 -21.19744 -18.82302 -18.28707 -17.36103 -16.46740 -16.32231 -16.06026 -15.19603 -14.79006 -14.64231 -14.59269 -13.80557 -13.69433 -13.33948 -13.04132 -12.79489 -12.57454 -12.25910 -12.09033 -11.89616 -11.84303 -11.55857 -11.08981 -10.96079 -10.46746 -10.32628 -10.22817 -10.13225 -10.07760 -9.55432 -9.09894 -8.81550 -8.68017 -8.21419 -6.55121 -5.12332 2.26610 2.70252 3.01193 3.18812 3.23657 3.34886 4.15175 4.28202 4.36599 4.46503 4.66815 4.77694 4.93682 5.09849 5.22397 5.33060 5.40080 5.46278 5.58441 5.64752 5.66828 5.75207 5.81501 5.85461 5.95290 6.07514 6.22146 6.56844 7.07047 7.21418 7.34179 7.52195 8.25795 8.44176 9.08363 10.38888 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.007510 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.903488 B = 3727.691969 C = 4656.994030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.633 5.633 3 C 0.107 3.893 4 C -0.119 4.119 5 C -0.148 4.148 6 C 0.160 3.840 7 N -1.039 6.039 8 S 2.734 3.266 9 O -1.002 7.002 10 O -1.003 7.003 11 C -1.007 5.007 12 H 0.115 0.885 13 C 0.132 3.868 14 N -0.854 5.854 15 Si 0.921 3.079 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.262 1.262 19 C 0.158 3.842 20 C 0.539 3.461 21 O -0.491 6.491 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.289 0.711 32 H 0.085 0.915 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 18.266 -4.119 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.370 5.370 3 C -0.016 4.016 4 C -0.157 4.157 5 C -0.154 4.154 6 C 0.033 3.967 7 N -0.874 5.874 8 S 2.837 3.163 9 O -0.992 6.992 10 O -0.993 6.993 11 C -1.142 5.142 12 H 0.133 0.867 13 C -0.085 4.085 14 N -0.485 5.485 15 Si 0.745 3.255 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.186 1.186 19 C 0.031 3.969 20 C 0.325 3.675 21 O -0.363 6.363 22 H 0.101 0.899 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.942 16.967 -3.863 18.388 hybrid contribution -1.480 -0.543 0.127 1.582 sum -7.422 16.424 -3.737 18.406 Atomic orbital electron populations 1.21493 0.78293 1.03777 1.00940 1.48214 1.06198 1.07252 1.75363 1.22071 0.90677 0.87244 1.01626 1.22452 0.96579 0.93893 1.02814 1.22405 0.94458 0.96252 1.02257 1.21919 0.95620 0.85120 0.94042 1.60760 1.87584 1.24608 1.14447 0.99970 0.75228 0.68836 0.72281 1.93349 1.74750 1.75597 1.55530 1.93348 1.79253 1.85339 1.41387 1.30665 1.15292 1.07452 1.60759 0.86700 1.24766 0.97979 0.96686 0.89034 1.69912 1.24667 1.15096 1.38831 0.86154 0.81851 0.78845 0.78602 1.19277 1.20194 1.18593 1.21959 0.95424 0.91067 0.88414 1.19839 0.87562 0.84375 0.75679 1.90819 1.77999 1.20265 1.47231 0.89922 0.92401 0.92427 0.90675 0.91181 0.88665 0.89388 0.90592 0.89518 0.90114 0.89680 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 11.15 59.85 0.67 1.62 16 2 N -0.63 -7.63 3.35 -180.40 -0.60 -8.23 16 3 C 0.11 0.85 7.37 -2.90 -0.02 0.82 16 4 C -0.12 -0.98 6.59 -25.57 -0.17 -1.15 16 5 C -0.15 -2.09 1.14 -156.37 -0.18 -2.27 16 6 C 0.16 2.61 8.03 -7.76 -0.06 2.55 16 7 N -1.04 -22.52 4.23 -125.20 -0.53 -23.05 16 8 S 2.73 78.38 5.55 -107.50 -0.60 77.78 16 9 O -1.00 -31.15 18.02 -57.17 -1.03 -32.18 16 10 O -1.00 -31.00 18.02 -57.17 -1.03 -32.03 16 11 C -1.01 -30.52 9.75 30.60 0.30 -30.23 16 12 H 0.11 3.41 7.10 -52.49 -0.37 3.04 16 13 C 0.13 3.97 5.46 -17.82 -0.10 3.88 16 14 N -0.85 -26.64 13.19 55.43 0.73 -25.91 16 15 Si 0.92 22.60 29.54 -169.99 -5.02 17.57 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.16 2.64 8.03 -7.64 -0.06 2.58 16 20 C 0.54 8.94 7.39 -11.27 -0.08 8.86 16 21 O -0.49 -10.72 16.60 5.55 0.09 -10.63 16 22 H 0.08 0.98 7.55 -51.93 -0.39 0.59 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.58 7.89 -51.93 -0.41 0.17 16 28 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 31 H 0.29 8.08 8.31 -40.82 -0.34 7.74 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.41 8.13 -51.93 -0.42 0.98 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -41.00 298.70 -7.30 -48.30 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.11 Total: -2.80 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 0.29 Total: -13.34 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.40 Total: -57.19 kcal Atomic # 8 Polarization: -72.87 SS G_CDS: -1.97 Total: -74.84 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 78.38 SS G_CDS: -0.60 Total: 77.78 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -41.00 -7.30 -48.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.447 kcal (2) G-P(sol) polarization free energy of solvation -41.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds