Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46900 * 124.35704 * 2 1 4 4 C 1.54758 * 105.55178 * 196.75889 * 3 2 1 5 5 C 1.53462 * 101.42149 * 335.66735 * 4 3 2 6 6 C 1.52259 * 116.16868 * 252.24990 * 5 4 3 7 7 N 1.47300 * 87.65632 * 218.14765 * 6 5 4 8 8 S 1.65608 * 135.91089 * 206.03114 * 7 6 5 9 9 O 1.42104 * 106.39724 * 203.53875 * 8 7 6 10 10 O 1.42097 * 106.40199 * 336.45787 * 8 7 6 11 11 C 1.76195 * 107.21632 * 90.00044 * 8 7 6 12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47022 * 90.00022 * 15 13 11 17 17 H 1.48503 * 109.47301 * 209.99571 * 15 13 11 18 18 H 1.48496 * 109.47405 * 329.99823 * 15 13 11 19 19 C 1.47301 * 88.17220 * 26.28594 * 7 6 5 20 20 C 1.34817 * 124.36264 * 179.97438 * 2 1 3 21 21 O 1.21285 * 125.19882 * 358.85215 * 20 2 1 22 22 H 1.09002 * 109.46814 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47170 * 300.01815 * 1 2 3 24 24 H 1.08998 * 109.47135 * 60.01841 * 1 2 3 25 25 H 1.09003 * 110.23188 * 315.77945 * 3 2 1 26 26 H 1.08998 * 110.23219 * 77.66136 * 3 2 1 27 27 H 1.08996 * 111.03663 * 217.62359 * 4 3 2 28 28 H 1.09009 * 111.03305 * 93.70112 * 4 3 2 29 29 H 1.09002 * 113.51989 * 103.45233 * 6 5 4 30 30 H 1.08994 * 113.52125 * 332.84346 * 6 5 4 31 31 H 0.96997 * 119.99891 * 180.02562 * 14 13 11 32 32 H 1.09004 * 113.51599 * 88.41148 * 19 7 6 33 33 H 1.08999 * 113.51901 * 219.01041 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2127 0.0000 4 6 3.7067 0.7496 -0.4299 5 6 3.6770 -0.7309 -0.0268 6 6 4.5138 -1.1134 1.1863 7 7 4.8548 -2.3613 0.4820 8 16 5.3070 -3.8917 0.9248 9 8 6.0032 -4.4413 -0.1855 10 8 5.8761 -3.7823 2.2222 11 6 3.8327 -4.8392 1.1063 12 1 2.8708 -4.3807 0.9304 13 6 3.9069 -6.1663 1.4729 14 7 5.0781 -6.7250 1.6866 15 14 2.3438 -7.1707 1.6661 16 1 1.9998 -7.8056 0.3684 17 1 2.5556 -8.2238 2.6915 18 1 1.2334 -6.2815 2.0918 19 6 4.6242 -1.6520 -0.7882 20 6 2.2260 -1.1129 0.0005 21 8 1.8026 -2.2493 0.0209 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8898 24 1 -0.3633 0.5135 -0.8901 25 1 1.9017 1.9376 -0.7133 26 1 2.3264 1.6472 0.9991 27 1 4.4790 1.2890 0.1184 28 1 3.8440 0.8595 -1.5057 29 1 3.9240 -1.2709 2.0894 30 1 5.3693 -0.4579 1.3489 31 1 5.1303 -7.6587 1.9442 32 1 5.5103 -1.1450 -1.1703 33 1 4.1274 -2.2616 -1.5429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = -108.488669 kcal Electronic energy + Delta-G solvation = -20128.641337 eV Core-core repulsion = 16895.126477 eV Total energy + Delta-G solvation = -3233.514861 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.23090 -38.97404 -37.44416 -37.29707 -36.21580 -35.22236 -32.74860 -28.66127 -28.24639 -27.80400 -27.12625 -24.60658 -22.16354 -20.76620 -19.67214 -19.16672 -18.33227 -17.50128 -17.22285 -17.06439 -16.42528 -16.19494 -16.09718 -15.61717 -14.97095 -14.60438 -14.28418 -14.01326 -13.97105 -13.74160 -13.28513 -13.25585 -13.18950 -13.08468 -12.86851 -12.60721 -12.54575 -12.47942 -12.37878 -11.64900 -11.43624 -11.30416 -11.00922 -10.80456 -9.87626 -9.59842 -8.79210 -7.49014 0.20407 1.23112 1.25162 1.42339 1.47246 2.11143 2.16189 2.50904 2.75639 3.32351 3.33677 3.68008 3.77068 3.94151 3.97490 4.25523 4.40249 4.47377 4.54203 4.56352 4.64686 4.73391 4.79620 4.87328 4.90643 5.19369 5.25485 5.26764 5.41288 5.59528 5.70449 6.00532 6.14735 6.76418 7.24953 8.16835 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.007510 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.903488 B = 3727.691969 C = 4656.994030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.626 5.626 3 C 0.100 3.900 4 C -0.103 4.103 5 C -0.132 4.132 6 C 0.153 3.847 7 N -1.061 6.061 8 S 2.747 3.253 9 O -1.041 7.041 10 O -1.039 7.039 11 C -1.037 5.037 12 H 0.109 0.891 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.986 3.014 16 H -0.254 1.254 17 H -0.250 1.250 18 H -0.261 1.261 19 C 0.149 3.851 20 C 0.518 3.482 21 O -0.565 6.565 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.300 0.700 32 H 0.129 0.871 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 21.500 -4.593 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.360 5.360 3 C -0.021 4.021 4 C -0.141 4.141 5 C -0.138 4.138 6 C 0.027 3.973 7 N -0.900 5.900 8 S 2.851 3.149 9 O -1.031 7.031 10 O -1.029 7.029 11 C -1.170 5.170 12 H 0.127 0.873 13 C -0.141 4.141 14 N -0.527 5.527 15 Si 0.804 3.196 16 H -0.178 1.178 17 H -0.174 1.174 18 H -0.185 1.185 19 C 0.024 3.976 20 C 0.305 3.695 21 O -0.442 6.442 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.129 0.871 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.910 20.269 -4.336 21.849 hybrid contribution -1.222 -1.349 0.232 1.835 sum -8.132 18.920 -4.104 20.998 Atomic orbital electron populations 1.21673 0.77292 1.02602 1.03521 1.48435 1.07217 1.07525 1.72835 1.22490 0.89718 0.85877 1.03993 1.22605 0.97957 0.88775 1.04785 1.22233 0.92027 0.99734 0.99803 1.22442 0.97573 0.83036 0.94212 1.60167 1.87367 1.24299 1.18203 0.99022 0.74628 0.70116 0.71150 1.93280 1.75669 1.77889 1.56281 1.93281 1.79969 1.86667 1.43025 1.31029 1.15885 1.08831 1.61246 0.87260 1.25964 1.01951 0.97952 0.88220 1.69970 1.26978 1.16173 1.39599 0.85211 0.76842 0.77608 0.79904 1.17769 1.17351 1.18523 1.22448 0.97871 0.90879 0.86444 1.20470 0.89307 0.84413 0.75279 1.90773 1.79342 1.23268 1.50865 0.93057 0.90098 0.89411 0.87104 0.89182 0.85094 0.87154 0.92215 0.84900 0.88995 0.85295 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 11.15 127.77 1.42 3.03 16 2 N -0.63 -13.50 3.35 -843.03 -2.82 -16.32 16 3 C 0.10 1.05 7.37 86.90 0.64 1.69 16 4 C -0.10 -1.13 6.59 31.35 0.21 -0.93 16 5 C -0.13 -3.43 1.14 -53.38 -0.06 -3.49 16 6 C 0.15 4.75 8.03 83.54 0.67 5.42 16 7 N -1.06 -46.59 4.23 -550.01 -2.32 -48.91 16 8 S 2.75 164.17 5.55 -56.49 -0.31 163.86 16 9 O -1.04 -67.63 18.02 -128.00 -2.31 -69.94 16 10 O -1.04 -66.86 18.02 -128.00 -2.31 -69.16 16 11 C -1.04 -65.75 9.75 67.73 0.66 -65.09 16 12 H 0.11 6.88 7.10 -2.91 -0.02 6.86 16 13 C 0.07 4.42 5.46 84.65 0.46 4.88 16 14 N -0.90 -57.58 13.19 21.45 0.28 -57.30 16 15 Si 0.99 47.12 29.54 68.60 2.03 49.15 16 16 H -0.25 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 18 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 19 C 0.15 4.82 8.03 83.61 0.67 5.50 16 20 C 0.52 17.00 7.39 87.45 0.65 17.65 16 21 O -0.56 -25.94 16.60 -3.05 -0.05 -26.00 16 22 H 0.05 1.25 7.55 -2.39 -0.02 1.23 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.13 0.63 7.89 -2.39 -0.02 0.61 16 28 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 30 H 0.13 2.87 8.00 -2.39 -0.02 2.85 16 31 H 0.30 17.18 8.31 -92.71 -0.77 16.41 16 32 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 Total: -1.00 -97.96 298.70 -1.37 -99.34 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.12 Total: 6.61 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 5.32 Total: -31.34 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -4.86 Total: -122.53 kcal Atomic # 8 Polarization: -160.44 SS G_CDS: -4.66 Total: -165.10 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 164.17 SS G_CDS: -0.31 Total: 163.86 kcal Total: -97.96 -1.37 -99.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.150 kcal (2) G-P(sol) polarization free energy of solvation -97.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds