Wall clock time and date at job start Mon Mar 30 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99923 * 2 1 4 4 N 1.34783 * 120.00187 * 180.02562 * 2 1 3 5 5 C 1.48144 * 127.83244 * 359.96951 * 4 2 1 6 6 C 1.54397 * 104.61605 * 140.41634 * 5 4 2 7 7 H 1.09000 * 117.61920 * 244.78433 * 6 5 4 8 8 C 1.53006 * 118.12031 * 87.18577 * 6 5 4 9 9 C 1.53000 * 60.55561 * 268.46278 * 8 6 5 10 10 N 1.46503 * 119.53740 * 248.23387 * 9 8 6 11 11 S 1.65611 * 119.99810 * 250.70792 * 10 9 8 12 12 O 1.42102 * 106.40101 * 311.45930 * 11 10 9 13 13 O 1.42103 * 106.39984 * 178.53867 * 11 10 9 14 14 C 1.76199 * 107.21466 * 65.00115 * 11 10 9 15 15 H 1.07995 * 120.00654 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99414 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99951 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.47249 * 127.38091 * 179.08139 * 4 2 1 23 23 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46927 * 299.99314 * 1 2 3 25 25 H 1.08995 * 109.47335 * 59.99551 * 1 2 3 26 26 H 1.08995 * 110.41300 * 21.63540 * 5 4 2 27 27 H 1.09002 * 110.40862 * 259.19451 * 5 4 2 28 28 H 1.08995 * 117.43850 * 160.81221 * 8 6 5 29 29 H 1.09000 * 117.43887 * 16.11194 * 8 6 5 30 30 H 0.96993 * 120.00383 * 70.71076 * 10 9 8 31 31 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 32 32 H 1.09004 * 109.08501 * 100.70871 * 22 4 2 33 33 H 1.08996 * 111.30152 * 338.58056 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6220 -2.5392 -0.0005 6 6 2.5409 -3.3342 -0.9531 7 1 2.1014 -3.7228 -1.8717 8 6 3.8021 -3.9753 -0.3703 9 6 3.8770 -2.5628 -0.9535 10 7 4.6338 -2.3295 -2.1860 11 16 6.0636 -1.4954 -2.1345 12 8 5.8158 -0.3210 -1.3737 13 8 6.5608 -1.4688 -3.4654 14 6 7.1991 -2.4644 -1.1984 15 1 6.8885 -3.4137 -0.7877 16 6 8.4844 -2.0106 -0.9903 17 7 8.8628 -0.8549 -1.4909 18 14 9.6881 -3.0374 0.0026 19 1 9.8752 -4.3554 -0.6558 20 1 9.1530 -3.2402 1.3729 21 1 10.9934 -2.3335 0.0795 22 6 3.6411 -1.3564 -0.0194 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.5990 -2.5329 -0.3767 27 1 1.6564 -2.9636 1.0029 28 1 4.2662 -4.7796 -0.9409 29 1 3.8599 -4.0750 0.7136 30 1 4.2974 -2.6635 -3.0322 31 1 8.2379 -0.3218 -2.0069 32 1 3.9840 -1.5844 0.9899 33 1 4.1499 -0.4726 -0.4040 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:55 Heat of formation + Delta-G solvation = -83.891133 kcal Electronic energy + Delta-G solvation = -20009.336896 eV Core-core repulsion = 16776.888665 eV Total energy + Delta-G solvation = -3232.448231 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41502 -38.27382 -35.58796 -34.45193 -34.23433 -33.23784 -31.72700 -30.21080 -27.67679 -25.66647 -25.53010 -21.46828 -20.16942 -19.51559 -19.28371 -17.84293 -17.26563 -16.11722 -15.75255 -15.62816 -15.35072 -14.73260 -14.18767 -13.98519 -13.90875 -13.54378 -13.06190 -12.70589 -12.49673 -12.39332 -12.08524 -11.86262 -11.67462 -11.15684 -11.09107 -10.99835 -10.83072 -10.64630 -10.33842 -10.30992 -9.96397 -9.61782 -9.19093 -8.95973 -8.63705 -8.32404 -7.18275 -5.40023 2.03226 2.71821 3.03020 3.22665 3.23377 3.44678 3.46547 4.08240 4.29823 4.46371 4.53976 4.66477 4.72058 4.86989 5.02303 5.10949 5.26313 5.31175 5.40314 5.47031 5.63418 5.69305 5.83056 6.01216 6.05020 6.18453 6.24639 6.48575 6.70628 7.55670 7.64828 7.66544 8.04190 8.26899 8.61283 10.19620 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.006361 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.187469 B = 4401.106074 C = 4651.051912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.525 3.475 3 O -0.536 6.536 4 N -0.621 5.621 5 C 0.128 3.872 6 C -0.188 4.188 7 H 0.123 0.877 8 C -0.133 4.133 9 C 0.104 3.896 10 N -1.088 6.088 11 S 2.688 3.312 12 O -1.002 7.002 13 O -1.011 7.011 14 C -1.079 5.079 15 H 0.104 0.896 16 C 0.089 3.911 17 N -0.843 5.843 18 Si 1.080 2.920 19 H -0.276 1.276 20 H -0.275 1.275 21 H -0.272 1.272 22 C 0.104 3.896 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.406 0.594 31 H 0.276 0.724 32 H 0.082 0.918 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.595 -8.139 4.337 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.315 3.685 3 O -0.413 6.413 4 N -0.356 5.356 5 C 0.005 3.995 6 C -0.209 4.209 7 H 0.141 0.859 8 C -0.173 4.173 9 C 0.011 3.989 10 N -0.840 5.840 11 S 2.790 3.210 12 O -0.992 6.992 13 O -1.001 7.001 14 C -1.214 5.214 15 H 0.122 0.878 16 C -0.129 4.129 17 N -0.472 5.472 18 Si 0.903 3.097 19 H -0.202 1.202 20 H -0.201 1.201 21 H -0.196 1.196 22 C -0.019 4.019 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.238 0.762 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.634 -6.471 4.602 15.778 hybrid contribution -1.693 -0.973 -0.827 2.121 sum -15.327 -7.444 3.775 17.452 Atomic orbital electron populations 1.21871 0.91600 1.04093 1.05152 1.20459 0.90120 0.82011 0.75953 1.90787 1.70531 1.30361 1.49572 1.49194 1.07663 1.05465 1.73249 1.21907 0.97132 0.81395 0.99097 1.24052 0.89995 1.04391 1.02508 0.85874 1.23511 0.96745 0.95472 1.01595 1.21405 0.96473 0.91689 0.89303 1.55075 1.40723 1.76589 1.11568 1.01146 0.71732 0.73941 0.74146 1.93357 1.84665 1.48706 1.72467 1.93438 1.78568 1.87711 1.40385 1.31349 1.13296 1.22573 1.54140 0.87763 1.25975 0.97237 0.95669 0.94037 1.70851 1.39383 1.10108 1.26870 0.83438 0.75325 0.75102 0.75807 1.20163 1.20056 1.19644 1.22411 0.81005 0.99693 0.98765 0.90576 0.88789 0.88836 0.89600 0.90257 0.87102 0.87804 0.76230 0.91163 0.89956 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 36.00 0.37 -1.23 16 2 C 0.53 8.32 8.01 -10.98 -0.09 8.23 16 3 O -0.54 -11.44 17.34 5.55 0.10 -11.34 16 4 N -0.62 -9.36 3.30 -170.03 -0.56 -9.92 16 5 C 0.13 1.31 6.62 -2.41 -0.02 1.29 16 6 C -0.19 -2.19 7.13 -89.21 -0.64 -2.83 16 7 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.13 -1.70 10.07 -26.73 -0.27 -1.97 16 9 C 0.10 1.76 3.36 -130.42 -0.44 1.32 16 10 N -1.09 -21.38 6.14 1.67 0.01 -21.37 16 11 S 2.69 70.03 4.36 -107.50 -0.47 69.56 16 12 O -1.00 -28.53 14.39 -57.17 -0.82 -29.35 16 13 O -1.01 -29.17 17.64 -57.17 -1.01 -30.18 16 14 C -1.08 -29.14 9.72 30.60 0.30 -28.84 16 15 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 16 C 0.09 2.52 5.46 -17.82 -0.10 2.42 16 17 N -0.84 -25.80 13.66 55.43 0.76 -25.05 16 18 Si 1.08 23.67 29.90 -169.99 -5.08 18.58 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 C 0.10 1.95 6.30 -2.91 -0.02 1.93 16 23 H 0.08 0.51 5.99 -51.93 -0.31 0.20 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.62 6.44 -51.93 -0.33 0.29 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.41 6.85 8.96 -34.48 -0.31 6.54 16 31 H 0.28 8.73 6.52 -40.82 -0.27 8.46 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.14 3.30 4.88 -51.93 -0.25 3.05 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -37.87 292.58 -7.21 -45.08 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.64 Total: 9.26 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.90 Total: -19.68 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.21 Total: -56.33 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -1.74 Total: -70.87 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.58 kcal Atomic # 16 Polarization: 70.03 SS G_CDS: -0.47 Total: 69.56 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -37.87 -7.21 -45.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.811 kcal (2) G-P(sol) polarization free energy of solvation -37.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds