Wall clock time and date at job start Mon Mar 30 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99923 * 2 1 4 4 N 1.34783 * 120.00187 * 180.02562 * 2 1 3 5 5 C 1.48144 * 127.83244 * 359.96951 * 4 2 1 6 6 C 1.54397 * 104.61605 * 140.41634 * 5 4 2 7 7 H 1.09000 * 117.61920 * 244.78433 * 6 5 4 8 8 C 1.53006 * 118.12031 * 87.18577 * 6 5 4 9 9 C 1.53000 * 60.55561 * 268.46278 * 8 6 5 10 10 N 1.46503 * 119.53740 * 248.23387 * 9 8 6 11 11 S 1.65611 * 119.99810 * 250.70792 * 10 9 8 12 12 O 1.42102 * 106.40101 * 311.45930 * 11 10 9 13 13 O 1.42103 * 106.39984 * 178.53867 * 11 10 9 14 14 C 1.76199 * 107.21466 * 65.00115 * 11 10 9 15 15 H 1.07995 * 120.00654 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99414 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99951 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.47249 * 127.38091 * 179.08139 * 4 2 1 23 23 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46927 * 299.99314 * 1 2 3 25 25 H 1.08995 * 109.47335 * 59.99551 * 1 2 3 26 26 H 1.08995 * 110.41300 * 21.63540 * 5 4 2 27 27 H 1.09002 * 110.40862 * 259.19451 * 5 4 2 28 28 H 1.08995 * 117.43850 * 160.81221 * 8 6 5 29 29 H 1.09000 * 117.43887 * 16.11194 * 8 6 5 30 30 H 0.96993 * 120.00383 * 70.71076 * 10 9 8 31 31 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 32 32 H 1.09004 * 109.08501 * 100.70871 * 22 4 2 33 33 H 1.08996 * 111.30152 * 338.58056 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6220 -2.5392 -0.0005 6 6 2.5409 -3.3342 -0.9531 7 1 2.1014 -3.7228 -1.8717 8 6 3.8021 -3.9753 -0.3703 9 6 3.8770 -2.5628 -0.9535 10 7 4.6338 -2.3295 -2.1860 11 16 6.0636 -1.4954 -2.1345 12 8 5.8158 -0.3210 -1.3737 13 8 6.5608 -1.4688 -3.4654 14 6 7.1991 -2.4644 -1.1984 15 1 6.8885 -3.4137 -0.7877 16 6 8.4844 -2.0106 -0.9903 17 7 8.8628 -0.8549 -1.4909 18 14 9.6881 -3.0374 0.0026 19 1 9.8752 -4.3554 -0.6558 20 1 9.1530 -3.2402 1.3729 21 1 10.9934 -2.3335 0.0795 22 6 3.6411 -1.3564 -0.0194 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.5990 -2.5329 -0.3767 27 1 1.6564 -2.9636 1.0029 28 1 4.2662 -4.7796 -0.9409 29 1 3.8599 -4.0750 0.7136 30 1 4.2974 -2.6635 -3.0322 31 1 8.2379 -0.3218 -2.0069 32 1 3.9840 -1.5844 0.9899 33 1 4.1499 -0.4726 -0.4040 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:54 Heat of formation + Delta-G solvation = -116.901076 kcal Electronic energy + Delta-G solvation = -20010.768314 eV Core-core repulsion = 16776.888665 eV Total energy + Delta-G solvation = -3233.879650 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56710 -39.53823 -37.75260 -36.61717 -35.60942 -35.30954 -33.14237 -31.17594 -28.75322 -27.71907 -26.73406 -22.55723 -21.49393 -21.42346 -20.57729 -19.67057 -18.57132 -17.90258 -17.12681 -16.94870 -16.68816 -16.46709 -15.97927 -15.67391 -15.16107 -14.86593 -14.48450 -14.35359 -13.68806 -13.38291 -13.21249 -13.09935 -13.04644 -12.96192 -12.89001 -12.75264 -12.59667 -12.36358 -11.97046 -11.94270 -11.25925 -11.18025 -10.93993 -10.71897 -10.01549 -9.80785 -9.40085 -7.63069 0.07343 1.46787 1.51780 1.54206 1.76631 1.91918 2.33481 2.38430 2.56160 2.62310 3.30400 3.38249 3.57842 3.74759 3.90453 3.94544 4.16045 4.29047 4.37803 4.51495 4.62133 4.68576 4.85236 4.90128 4.97055 5.05978 5.08985 5.15955 5.22281 5.41275 5.80219 6.17087 6.49651 6.54674 7.09954 7.94306 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.006361 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.187469 B = 4401.106074 C = 4651.051912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.510 3.490 3 O -0.611 6.611 4 N -0.620 5.620 5 C 0.122 3.878 6 C -0.142 4.142 7 H 0.151 0.849 8 C -0.117 4.117 9 C 0.041 3.959 10 N -1.074 6.074 11 S 2.692 3.308 12 O -1.039 7.039 13 O -1.051 7.051 14 C -1.085 5.085 15 H 0.130 0.870 16 C 0.032 3.968 17 N -0.880 5.880 18 Si 1.122 2.878 19 H -0.247 1.247 20 H -0.246 1.246 21 H -0.274 1.274 22 C 0.096 3.904 23 H 0.116 0.884 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.130 0.870 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.418 0.582 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.307 -12.018 5.704 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.302 3.698 3 O -0.493 6.493 4 N -0.354 5.354 5 C 0.001 3.999 6 C -0.163 4.163 7 H 0.168 0.832 8 C -0.156 4.156 9 C -0.050 4.050 10 N -0.830 5.830 11 S 2.795 3.205 12 O -1.028 7.028 13 O -1.041 7.041 14 C -1.220 5.220 15 H 0.148 0.852 16 C -0.178 4.178 17 N -0.510 5.510 18 Si 0.936 3.064 19 H -0.171 1.171 20 H -0.170 1.170 21 H -0.198 1.198 22 C -0.029 4.029 23 H 0.134 0.866 24 H 0.127 0.873 25 H 0.120 0.880 26 H 0.148 0.852 27 H 0.126 0.874 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.406 -10.403 5.952 20.317 hybrid contribution -0.980 0.203 -1.245 1.598 sum -17.386 -10.199 4.707 20.699 Atomic orbital electron populations 1.21908 0.85986 1.07051 1.06208 1.21795 0.92657 0.81085 0.74274 1.90751 1.72472 1.33101 1.52969 1.49373 1.06306 1.07501 1.72183 1.22390 0.98589 0.78119 1.00772 1.24382 0.87985 1.00733 1.03185 0.83160 1.23701 0.96746 0.92209 1.02973 1.21646 1.01470 0.93047 0.88866 1.54326 1.38919 1.76113 1.13686 1.00636 0.72837 0.74025 0.73001 1.93345 1.85574 1.50958 1.72918 1.93366 1.80305 1.88385 1.42060 1.31696 1.13419 1.23367 1.53505 0.85243 1.27897 1.00113 0.95676 0.94067 1.71006 1.39096 1.11830 1.29118 0.83049 0.72959 0.74541 0.75888 1.17058 1.17009 1.19837 1.22146 0.83325 0.98351 0.99111 0.86582 0.87340 0.88018 0.85195 0.87397 0.86063 0.85849 0.74706 0.93585 0.89739 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.24 71.24 0.73 -1.66 16 2 C 0.51 15.87 8.01 87.66 0.70 16.57 16 3 O -0.61 -27.59 17.34 -3.04 -0.05 -27.64 16 4 N -0.62 -17.69 3.30 -810.25 -2.67 -20.36 16 5 C 0.12 1.84 6.62 86.54 0.57 2.41 16 6 C -0.14 -2.60 7.13 -9.88 -0.07 -2.67 16 7 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 8 C -0.12 -2.48 10.07 30.60 0.31 -2.18 16 9 C 0.04 1.32 3.36 4.51 0.02 1.34 16 10 N -1.07 -42.22 6.14 -148.64 -0.91 -43.13 16 11 S 2.69 146.34 4.36 -56.49 -0.25 146.09 16 12 O -1.04 -63.48 14.39 -128.00 -1.84 -65.33 16 13 O -1.05 -63.68 17.64 -128.00 -2.26 -65.93 16 14 C -1.08 -59.19 9.72 67.73 0.66 -58.53 16 15 H 0.13 6.17 7.81 -2.91 -0.02 6.14 16 16 C 0.03 1.84 5.46 84.66 0.46 2.30 16 17 N -0.88 -56.16 13.66 21.45 0.29 -55.87 16 18 Si 1.12 46.38 29.90 68.60 2.05 48.43 16 19 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 20 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.10 3.61 6.30 86.71 0.55 4.16 16 23 H 0.12 0.84 5.99 -2.39 -0.01 0.83 16 24 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.13 0.90 6.44 -2.39 -0.02 0.89 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.42 13.89 8.96 -96.75 -0.87 13.02 16 31 H 0.25 17.07 6.52 -92.70 -0.60 16.46 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.08 4.08 4.88 -2.39 -0.01 4.07 16 Total: -1.00 -93.05 292.58 -1.27 -94.31 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.45 Total: 27.69 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.93 Total: -38.26 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -3.29 Total: -119.36 kcal Atomic # 8 Polarization: -154.75 SS G_CDS: -4.15 Total: -158.90 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.05 Total: 48.43 kcal Atomic # 16 Polarization: 146.34 SS G_CDS: -0.25 Total: 146.09 kcal Total: -93.05 -1.27 -94.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.588 kcal (2) G-P(sol) polarization free energy of solvation -93.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds