Wall clock time and date at job start Mon Mar 30 2020 01:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 120.00010 * 2 1 4 4 N 1.34776 * 119.99910 * 180.02562 * 2 1 3 5 5 C 1.48145 * 127.83567 * 359.97429 * 4 2 1 6 6 C 1.54391 * 104.61898 * 219.60865 * 5 4 2 7 7 H 1.09000 * 117.62101 * 115.21314 * 6 5 4 8 8 C 1.53002 * 118.90082 * 272.79341 * 6 5 4 9 9 C 1.52999 * 60.55963 * 91.09280 * 8 6 5 10 10 N 1.46494 * 119.53981 * 111.76729 * 9 8 6 11 11 S 1.65606 * 119.99739 * 102.38984 * 10 9 8 12 12 O 1.42100 * 106.40109 * 184.11395 * 11 10 9 13 13 O 1.42096 * 106.40316 * 51.19122 * 11 10 9 14 14 C 1.76205 * 107.21897 * 297.65212 * 11 10 9 15 15 H 1.08003 * 119.99422 * 11.58283 * 14 11 10 16 16 C 1.37866 * 120.00187 * 191.57860 * 14 11 10 17 17 N 1.31518 * 120.00110 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00199 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47259 * 89.99771 * 18 16 14 20 20 H 1.48500 * 109.47130 * 210.00051 * 18 16 14 21 21 H 1.48501 * 109.46970 * 329.99913 * 18 16 14 22 22 C 1.48142 * 127.83859 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.46817 * 270.00233 * 1 2 3 24 24 H 1.09000 * 109.46514 * 29.99917 * 1 2 3 25 25 H 1.08997 * 109.47110 * 149.99447 * 1 2 3 26 26 H 1.08993 * 110.41101 * 100.82589 * 5 4 2 27 27 H 1.09006 * 110.41123 * 338.38974 * 5 4 2 28 28 H 1.09005 * 117.43444 * 343.43905 * 8 6 5 29 29 H 1.08996 * 117.44430 * 198.74359 * 8 6 5 30 30 H 0.96999 * 120.00371 * 282.39481 * 10 9 8 31 31 H 0.97001 * 120.00237 * 180.02562 * 17 16 14 32 32 H 1.08991 * 110.41131 * 21.60387 * 22 4 2 33 33 H 1.08999 * 110.40616 * 259.17318 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6220 -2.5392 -0.0006 6 6 2.5412 -3.3345 0.9513 7 1 2.1022 -3.7233 1.8701 8 6 3.8066 -3.9833 0.3866 9 6 3.8775 -2.5631 0.9513 10 7 4.6250 -2.3133 2.1862 11 16 6.1334 -1.6331 2.1177 12 8 6.6250 -1.6121 3.4508 13 8 6.0115 -0.4664 1.3158 14 6 7.1671 -2.7454 1.2237 15 1 6.7305 -3.5735 0.6850 16 6 8.5330 -2.5587 1.2119 17 7 9.0646 -1.5506 1.8683 18 14 9.6288 -3.7375 0.2636 19 1 9.7992 -3.2449 -1.1269 20 1 10.9555 -3.8210 0.9254 21 1 9.0026 -5.0838 0.2386 22 6 3.6485 -1.3693 -0.0001 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6559 -2.9634 -1.0040 27 1 0.5991 -2.5330 0.3760 28 1 3.8724 -4.0975 -0.6954 29 1 4.2665 -4.7799 0.9713 30 1 4.2366 -2.5463 3.0439 31 1 10.0256 -1.4190 1.8598 32 1 4.1544 -0.4805 0.3768 33 1 3.9992 -1.6105 -1.0035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:57 Heat of formation + Delta-G solvation = -83.721905 kcal Electronic energy + Delta-G solvation = -19900.251750 eV Core-core repulsion = 16667.810857 eV Total energy + Delta-G solvation = -3232.440893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31189 -38.23496 -35.21888 -34.13588 -33.96794 -33.09809 -31.59445 -30.14732 -27.63002 -26.12702 -25.61667 -21.39783 -20.03487 -19.42336 -18.82248 -17.34298 -17.08276 -16.07813 -15.70849 -15.55036 -15.32851 -14.90369 -14.17770 -13.87543 -13.84608 -13.32544 -12.94889 -12.63970 -12.37352 -12.09934 -11.98183 -11.79039 -11.64408 -11.31242 -11.21643 -10.85365 -10.62307 -10.57440 -10.28437 -10.10018 -9.90883 -9.53537 -9.24353 -8.99966 -8.67152 -8.43322 -6.68148 -5.30816 2.26834 2.73849 3.03616 3.07134 3.14287 3.19186 3.52089 4.04401 4.48229 4.52662 4.62130 4.67341 4.73955 4.94629 5.09233 5.18198 5.30178 5.38614 5.45156 5.65831 5.71451 5.82643 5.90967 6.05909 6.12739 6.26946 6.41392 6.60485 6.84043 7.32358 7.67826 7.79451 7.99838 8.28273 8.89637 10.25345 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.006157 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.862378 B = 4546.934109 C = 4864.595002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.526 3.474 3 O -0.538 6.538 4 N -0.623 5.623 5 C 0.129 3.871 6 C -0.188 4.188 7 H 0.122 0.878 8 C -0.132 4.132 9 C 0.102 3.898 10 N -1.096 6.096 11 S 2.710 3.290 12 O -0.997 6.997 13 O -1.005 7.005 14 C -1.014 5.014 15 H 0.104 0.896 16 C 0.132 3.868 17 N -0.842 5.842 18 Si 0.920 3.080 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.263 1.263 22 C 0.113 3.887 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.404 0.596 31 H 0.290 0.710 32 H 0.128 0.872 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 -6.759 -4.609 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.316 3.684 3 O -0.414 6.414 4 N -0.358 5.358 5 C 0.006 3.994 6 C -0.209 4.209 7 H 0.140 0.860 8 C -0.172 4.172 9 C 0.009 3.991 10 N -0.846 5.846 11 S 2.811 3.189 12 O -0.988 6.988 13 O -0.995 6.995 14 C -1.148 5.148 15 H 0.122 0.878 16 C -0.087 4.087 17 N -0.471 5.471 18 Si 0.744 3.256 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.010 4.010 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.236 0.764 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.623 -5.002 -4.298 16.042 hybrid contribution 0.533 -1.503 -0.213 1.609 sum -14.091 -6.506 -4.511 16.162 Atomic orbital electron populations 1.21871 0.91584 1.04590 1.04597 1.20441 0.90095 0.81959 0.75921 1.90780 1.70613 1.30400 1.49643 1.49386 1.07757 1.05423 1.73273 1.21851 0.97070 0.81424 0.99056 1.24005 0.89933 1.04364 1.02573 0.85966 1.23514 0.96595 0.95353 1.01716 1.21368 0.96842 0.91328 0.89541 1.55460 1.36466 1.82708 1.10008 1.00620 0.70083 0.74317 0.73876 1.93382 1.77735 1.87954 1.39691 1.93345 1.85593 1.49244 1.71290 1.30471 1.04562 1.31139 1.48598 0.87793 1.24759 0.97587 0.94378 0.91933 1.69933 1.15055 1.26888 1.35251 0.86170 0.78754 0.80748 0.79904 1.19182 1.20070 1.18693 1.22374 0.80534 0.99424 0.98666 0.88988 0.88942 0.90309 0.90370 0.89734 0.87920 0.86918 0.76428 0.89933 0.85356 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.72 36.01 0.35 -1.21 16 2 C 0.53 8.18 8.02 -10.98 -0.09 8.09 16 3 O -0.54 -11.26 17.37 5.56 0.10 -11.16 16 4 N -0.62 -9.22 3.32 -169.33 -0.56 -9.78 16 5 C 0.13 1.30 6.50 -2.41 -0.02 1.29 16 6 C -0.19 -2.19 7.10 -89.21 -0.63 -2.82 16 7 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 8 C -0.13 -1.71 10.10 -26.73 -0.27 -1.98 16 9 C 0.10 1.72 3.23 -130.43 -0.42 1.30 16 10 N -1.10 -21.70 6.12 1.66 0.01 -21.69 16 11 S 2.71 71.63 5.14 -107.50 -0.55 71.08 16 12 O -1.00 -29.53 17.57 -57.17 -1.00 -30.54 16 13 O -1.00 -29.15 15.23 -57.17 -0.87 -30.02 16 14 C -1.01 -27.21 9.67 30.60 0.30 -26.92 16 15 H 0.10 2.51 7.81 -52.48 -0.41 2.10 16 16 C 0.13 3.63 5.45 -17.82 -0.10 3.53 16 17 N -0.84 -24.74 12.83 55.43 0.71 -24.03 16 18 Si 0.92 20.25 29.54 -169.99 -5.02 15.23 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 22 C 0.11 2.06 6.35 -2.42 -0.02 2.05 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.52 7.05 -51.93 -0.37 0.15 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.61 7.05 -51.93 -0.37 0.24 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.40 6.93 8.96 -34.47 -0.31 6.62 16 31 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.13 2.96 5.49 -51.93 -0.29 2.68 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -37.95 296.25 -7.45 -45.40 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.83 Total: 7.71 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.90 Total: -16.67 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.16 Total: -55.50 kcal Atomic # 8 Polarization: -69.94 SS G_CDS: -1.78 Total: -71.72 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 71.63 SS G_CDS: -0.55 Total: 71.08 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -37.95 -7.45 -45.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.320 kcal (2) G-P(sol) polarization free energy of solvation -37.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds