Wall clock time and date at job start Mon Mar 30 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 120.00010 * 2 1 4 4 N 1.34776 * 119.99910 * 180.02562 * 2 1 3 5 5 C 1.48145 * 127.83567 * 359.97429 * 4 2 1 6 6 C 1.54391 * 104.61898 * 219.60865 * 5 4 2 7 7 H 1.09000 * 117.62101 * 115.21314 * 6 5 4 8 8 C 1.53002 * 118.90082 * 272.79341 * 6 5 4 9 9 C 1.52999 * 60.55963 * 91.09280 * 8 6 5 10 10 N 1.46494 * 119.53981 * 111.76729 * 9 8 6 11 11 S 1.65606 * 119.99739 * 102.38984 * 10 9 8 12 12 O 1.42100 * 106.40109 * 184.11395 * 11 10 9 13 13 O 1.42096 * 106.40316 * 51.19122 * 11 10 9 14 14 C 1.76205 * 107.21897 * 297.65212 * 11 10 9 15 15 H 1.08003 * 119.99422 * 11.58283 * 14 11 10 16 16 C 1.37866 * 120.00187 * 191.57860 * 14 11 10 17 17 N 1.31518 * 120.00110 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00199 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47259 * 89.99771 * 18 16 14 20 20 H 1.48500 * 109.47130 * 210.00051 * 18 16 14 21 21 H 1.48501 * 109.46970 * 329.99913 * 18 16 14 22 22 C 1.48142 * 127.83859 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.46817 * 270.00233 * 1 2 3 24 24 H 1.09000 * 109.46514 * 29.99917 * 1 2 3 25 25 H 1.08997 * 109.47110 * 149.99447 * 1 2 3 26 26 H 1.08993 * 110.41101 * 100.82589 * 5 4 2 27 27 H 1.09006 * 110.41123 * 338.38974 * 5 4 2 28 28 H 1.09005 * 117.43444 * 343.43905 * 8 6 5 29 29 H 1.08996 * 117.44430 * 198.74359 * 8 6 5 30 30 H 0.96999 * 120.00371 * 282.39481 * 10 9 8 31 31 H 0.97001 * 120.00237 * 180.02562 * 17 16 14 32 32 H 1.08991 * 110.41131 * 21.60387 * 22 4 2 33 33 H 1.08999 * 110.40616 * 259.17318 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6220 -2.5392 -0.0006 6 6 2.5412 -3.3345 0.9513 7 1 2.1022 -3.7233 1.8701 8 6 3.8066 -3.9833 0.3866 9 6 3.8775 -2.5631 0.9513 10 7 4.6250 -2.3133 2.1862 11 16 6.1334 -1.6331 2.1177 12 8 6.6250 -1.6121 3.4508 13 8 6.0115 -0.4664 1.3158 14 6 7.1671 -2.7454 1.2237 15 1 6.7305 -3.5735 0.6850 16 6 8.5330 -2.5587 1.2119 17 7 9.0646 -1.5506 1.8683 18 14 9.6288 -3.7375 0.2636 19 1 9.7992 -3.2449 -1.1269 20 1 10.9555 -3.8210 0.9254 21 1 9.0026 -5.0838 0.2386 22 6 3.6485 -1.3693 -0.0001 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6559 -2.9634 -1.0040 27 1 0.5991 -2.5330 0.3760 28 1 3.8724 -4.0975 -0.6954 29 1 4.2665 -4.7799 0.9713 30 1 4.2366 -2.5463 3.0439 31 1 10.0256 -1.4190 1.8598 32 1 4.1544 -0.4805 0.3768 33 1 3.9992 -1.6105 -1.0035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:56 Heat of formation + Delta-G solvation = -116.841551 kcal Electronic energy + Delta-G solvation = -19901.687926 eV Core-core repulsion = 16667.810857 eV Total energy + Delta-G solvation = -3233.877069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45371 -39.48180 -37.40995 -36.16466 -35.44178 -35.15201 -33.01135 -31.09051 -28.70934 -28.23556 -26.68903 -22.49188 -21.31092 -20.97776 -20.40033 -19.17666 -18.40733 -17.95794 -17.06163 -16.86233 -16.72502 -16.42060 -15.93317 -15.65156 -15.07947 -14.64107 -14.24655 -13.97203 -13.52622 -13.37554 -13.31140 -13.04596 -12.99754 -12.98605 -12.66212 -12.55445 -12.51386 -12.29046 -12.23281 -11.80617 -11.23673 -11.18277 -10.95995 -10.82928 -10.04448 -9.75204 -8.72167 -7.45703 0.31684 1.35683 1.37806 1.53074 1.58914 1.94602 2.22346 2.44065 2.59418 2.91161 3.45191 3.49804 3.77087 3.81439 4.00514 4.05152 4.28037 4.45129 4.52566 4.58692 4.65076 4.73978 4.91988 4.96381 5.01284 5.08981 5.12750 5.22363 5.27182 5.34401 5.93552 6.32210 6.59521 6.80052 7.13587 8.23621 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.006157 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.862378 B = 4546.934109 C = 4864.595002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.511 3.489 3 O -0.612 6.612 4 N -0.622 5.622 5 C 0.124 3.876 6 C -0.141 4.141 7 H 0.148 0.852 8 C -0.118 4.118 9 C 0.041 3.959 10 N -1.082 6.082 11 S 2.712 3.288 12 O -1.043 7.043 13 O -1.046 7.046 14 C -1.024 5.024 15 H 0.129 0.871 16 C 0.065 3.935 17 N -0.897 5.897 18 Si 0.994 3.006 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.239 1.239 22 C 0.105 3.895 23 H 0.111 0.889 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.415 0.585 31 H 0.297 0.703 32 H 0.067 0.933 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -10.477 -6.072 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.304 3.696 3 O -0.494 6.494 4 N -0.356 5.356 5 C 0.003 3.997 6 C -0.162 4.162 7 H 0.166 0.834 8 C -0.158 4.158 9 C -0.051 4.051 10 N -0.838 5.838 11 S 2.814 3.186 12 O -1.033 7.033 13 O -1.036 7.036 14 C -1.159 5.159 15 H 0.147 0.853 16 C -0.147 4.147 17 N -0.528 5.528 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.192 1.192 21 H -0.162 1.162 22 C -0.019 4.019 23 H 0.129 0.871 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.125 0.875 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.249 0.751 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.238 -8.759 -5.746 20.172 hybrid contribution 1.219 -0.337 0.241 1.287 sum -16.020 -9.096 -5.505 19.227 Atomic orbital electron populations 1.21902 0.86008 1.06774 1.06413 1.21767 0.92606 0.81022 0.74253 1.90745 1.72523 1.33100 1.53006 1.49552 1.06383 1.07419 1.72253 1.22320 0.98475 0.78176 1.00688 1.24327 0.87961 1.00683 1.03252 0.83410 1.23693 0.96800 0.92136 1.03141 1.21612 1.01798 0.92765 0.88938 1.54653 1.34644 1.82408 1.12126 1.00144 0.71347 0.74353 0.72755 1.93307 1.79695 1.88641 1.41648 1.93312 1.86694 1.51805 1.71791 1.30763 1.05020 1.31387 1.48716 0.85312 1.26111 0.99603 0.96247 0.92737 1.70057 1.15906 1.29379 1.37472 0.85076 0.76617 0.78819 0.78289 1.18136 1.19228 1.16183 1.22146 0.82829 0.97834 0.99108 0.87063 0.88617 0.86305 0.87472 0.85302 0.85822 0.86264 0.75080 0.89335 0.91415 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.72 71.24 0.69 -1.62 16 2 C 0.51 15.59 8.02 87.66 0.70 16.29 16 3 O -0.61 -27.12 17.37 -3.04 -0.05 -27.17 16 4 N -0.62 -17.43 3.32 -808.02 -2.68 -20.11 16 5 C 0.12 1.86 6.50 86.54 0.56 2.42 16 6 C -0.14 -2.64 7.10 -9.88 -0.07 -2.71 16 7 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 8 C -0.12 -2.61 10.10 30.59 0.31 -2.30 16 9 C 0.04 1.31 3.23 4.51 0.01 1.33 16 10 N -1.08 -43.46 6.12 -148.67 -0.91 -44.37 16 11 S 2.71 150.04 5.14 -56.49 -0.29 149.75 16 12 O -1.04 -65.01 17.57 -128.00 -2.25 -67.26 16 13 O -1.05 -65.16 15.23 -128.00 -1.95 -67.11 16 14 C -1.02 -55.62 9.67 67.73 0.66 -54.96 16 15 H 0.13 6.07 7.81 -2.91 -0.02 6.05 16 16 C 0.07 3.64 5.45 84.65 0.46 4.10 16 17 N -0.90 -54.62 12.83 21.44 0.28 -54.34 16 18 Si 0.99 40.78 29.54 68.60 2.03 42.81 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 21 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 22 C 0.11 3.93 6.35 86.53 0.55 4.48 16 23 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.12 0.85 7.05 -2.39 -0.02 0.83 16 26 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.13 0.89 7.05 -2.38 -0.02 0.88 16 28 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.41 14.30 8.96 -96.74 -0.87 13.43 16 31 H 0.30 16.28 8.31 -92.71 -0.77 15.51 16 32 H 0.07 3.39 5.49 -2.39 -0.01 3.37 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -92.66 296.25 -1.67 -94.33 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.28 Total: 26.45 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 3.88 Total: -32.96 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.31 Total: -118.82 kcal Atomic # 8 Polarization: -157.30 SS G_CDS: -4.25 Total: -161.55 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 150.04 SS G_CDS: -0.29 Total: 149.75 kcal Total: -92.66 -1.67 -94.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.508 kcal (2) G-P(sol) polarization free energy of solvation -92.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds