Wall clock time and date at job start Mon Mar 30 2020 01:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46899 * 2 1 4 4 O 1.42897 * 109.47087 * 120.00069 * 2 1 3 5 5 C 1.35675 * 117.00060 * 276.39490 * 4 2 1 6 6 C 1.39312 * 119.81899 * 4.97680 * 5 4 2 7 7 C 1.36433 * 120.18474 * 179.75905 * 6 5 4 8 8 C 1.40829 * 119.81242 * 0.51123 * 7 6 5 9 9 C 1.41215 * 120.17886 * 179.71977 * 8 7 6 10 10 H 1.08002 * 119.99972 * 206.50336 * 9 8 7 11 11 C 1.39887 * 120.00151 * 26.50336 * 9 8 7 12 12 N 1.30886 * 119.99929 * 13.19820 * 11 9 8 13 13 Si 1.86803 * 119.99964 * 193.20155 * 11 9 8 14 14 H 1.48493 * 109.47389 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47100 * 120.00072 * 13 11 9 16 16 H 1.48505 * 109.46963 * 239.99846 * 13 11 9 17 17 C 1.40832 * 119.64290 * 359.74053 * 8 7 6 18 18 C 1.36436 * 119.81220 * 0.02562 * 17 8 7 19 19 C 1.50697 * 109.46991 * 240.00000 * 2 1 3 20 20 C 1.33398 * 125.19995 * 99.99887 * 19 2 1 21 21 C 1.38428 * 114.91687 * 180.02562 * 20 19 2 22 22 C 1.33389 * 114.92303 * 359.97438 * 21 20 19 23 23 S 1.75879 * 125.20613 * 280.02313 * 19 2 1 24 24 H 1.09005 * 109.46608 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46973 * 299.99522 * 1 2 3 26 26 H 1.08993 * 109.47476 * 60.00085 * 1 2 3 27 27 H 1.08007 * 119.90227 * 0.02562 * 6 5 4 28 28 H 1.07999 * 120.09237 * 180.25670 * 7 6 5 29 29 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 30 30 H 1.08003 * 120.09763 * 180.02562 * 17 8 7 31 31 H 1.08000 * 119.91463 * 179.97438 * 18 17 8 32 32 H 1.07999 * 122.53761 * 359.75111 * 20 19 2 33 33 H 1.08000 * 122.53377 * 179.97438 * 21 20 19 34 34 H 1.07997 * 125.20041 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0847 0.0539 2.3092 6 6 1.6115 1.3640 2.3300 7 6 1.6821 2.1008 3.4762 8 6 2.2452 1.5370 4.6373 9 6 2.3276 2.2946 5.8262 10 1 3.0941 2.0748 6.5546 11 6 1.4163 3.3297 6.0606 12 7 0.3413 3.4350 5.3214 13 14 1.7338 4.5618 7.4283 14 1 3.0081 4.2248 8.1122 15 1 1.8265 5.9275 6.8526 16 1 0.6187 4.5122 8.4079 17 6 2.7261 0.2137 4.6064 18 6 2.6436 -0.5112 3.4534 19 6 2.0323 -0.7104 -1.2304 20 6 2.4671 -0.1117 -2.3404 21 6 2.8801 -0.9717 -3.3434 22 6 2.7813 -2.2686 -3.0479 23 16 2.1345 -2.4556 -1.4230 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.1836 1.7962 1.4375 28 1 1.3110 3.1149 3.4918 29 1 -0.2908 4.1526 5.4842 30 1 3.1589 -0.2262 5.4927 31 1 3.0123 -1.5260 3.4277 32 1 2.4906 0.9625 -2.4499 33 1 3.2540 -0.6191 -4.2933 34 1 3.0555 -3.0798 -3.7060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:02 Heat of formation + Delta-G solvation = 12.665875 kcal Electronic energy + Delta-G solvation = -17833.090627 eV Core-core repulsion = 15015.678685 eV Total energy + Delta-G solvation = -2817.411942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22491 -37.71602 -36.42695 -33.46624 -32.10533 -29.69282 -28.98814 -28.31562 -25.14200 -24.13996 -22.36615 -21.16400 -20.28219 -19.24705 -17.37309 -17.25891 -16.73973 -15.45716 -15.21093 -14.64362 -14.37705 -13.99828 -13.43439 -13.06462 -12.81900 -12.63220 -12.56032 -12.22858 -12.07822 -11.73717 -11.70038 -11.49845 -11.13253 -11.05798 -10.93591 -10.68425 -10.44256 -9.94951 -9.77040 -9.34970 -9.06149 -8.64883 -8.39713 -7.65712 -6.99110 -6.69728 -4.27161 1.01739 1.69871 2.12081 2.72195 2.76567 2.96139 3.08843 3.14180 3.19593 3.95721 4.01283 4.63308 4.89741 5.04820 5.32435 5.38055 5.48640 5.56186 5.66698 5.81211 6.02760 6.08444 6.10790 6.25763 6.28517 6.42516 6.45986 6.72083 6.88887 7.06961 7.28814 7.40717 7.55688 7.90275 8.00321 8.15218 8.42997 8.64711 8.90891 8.98404 10.24518 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.043604 B = 0.003719 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.988720 B = 7528.086357 C = 7793.388117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.157 3.843 3 H 0.084 0.916 4 O -0.319 6.319 5 C -0.005 4.005 6 C -0.176 4.176 7 C -0.129 4.129 8 C 0.086 3.914 9 C -0.462 4.462 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.805 5.805 13 Si 0.909 3.091 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.194 4.194 18 C -0.114 4.114 19 C -0.160 4.160 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.232 4.232 23 S 0.135 5.865 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.278 0.722 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -5.164 -12.979 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.098 3.902 3 H 0.102 0.898 4 O -0.236 6.236 5 C -0.048 4.048 6 C -0.195 4.195 7 C -0.149 4.149 8 C 0.084 3.916 9 C -0.492 4.492 10 H 0.095 0.905 11 C -0.143 4.143 12 N -0.432 5.432 13 Si 0.734 3.266 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.201 1.201 17 C -0.213 4.213 18 C -0.133 4.133 19 C -0.278 4.278 20 C -0.173 4.173 21 C -0.165 4.165 22 C -0.368 4.368 23 S 0.400 5.600 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.142 0.858 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.549 -6.476 -12.104 13.738 hybrid contribution 0.264 2.014 -0.406 2.072 sum 0.813 -4.461 -12.510 13.307 Atomic orbital electron populations 1.22371 0.94607 1.03058 1.03004 1.20335 0.93605 0.95060 0.81187 0.89804 1.85880 1.83056 1.38725 1.15911 1.18546 1.08261 0.92134 0.85857 1.20662 1.05739 0.94220 0.98909 1.21019 1.02826 1.00068 0.90984 1.17616 0.90539 0.90536 0.92916 1.19511 1.13120 1.12898 1.03688 0.90538 1.25865 0.93812 0.97522 0.97132 1.69821 1.07802 1.29079 1.36535 0.86252 0.79471 0.80163 0.80747 1.18515 1.19859 1.20087 1.20620 1.09578 0.94861 0.96276 1.19614 1.03086 0.98893 0.91660 1.24463 1.07142 0.96860 0.99306 1.20050 1.02845 1.01294 0.93109 1.20077 1.03483 0.92309 1.00609 1.25727 1.09794 1.00611 1.00630 1.84444 1.61610 1.04364 1.09613 0.91881 0.90537 0.91677 0.88479 0.85789 0.91132 0.88207 0.88534 0.84314 0.84514 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.12 37.16 0.34 -2.28 16 2 C 0.16 2.63 2.67 -27.88 -0.07 2.56 16 3 H 0.08 1.41 6.34 -51.93 -0.33 1.08 16 4 O -0.32 -6.52 9.60 -18.73 -0.18 -6.70 16 5 C 0.00 -0.11 6.61 -38.78 -0.26 -0.37 16 6 C -0.18 -4.07 8.11 -39.83 -0.32 -4.39 16 7 C -0.13 -3.33 8.62 -39.25 -0.34 -3.67 16 8 C 0.09 2.29 5.57 -106.81 -0.59 1.69 16 9 C -0.46 -12.23 9.05 -37.84 -0.34 -12.57 16 10 H 0.08 1.95 7.88 -52.49 -0.41 1.54 16 11 C 0.07 1.81 5.22 -17.34 -0.09 1.72 16 12 N -0.81 -20.76 10.81 55.54 0.60 -20.16 16 13 Si 0.91 18.72 29.58 -169.99 -5.03 13.69 16 14 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 C -0.19 -4.76 9.74 -39.25 -0.38 -5.15 16 18 C -0.11 -2.65 9.92 -39.83 -0.40 -3.04 16 19 C -0.16 -2.37 5.48 -36.00 -0.20 -2.57 16 20 C -0.14 -1.83 10.04 -41.20 -0.41 -2.24 16 21 C -0.13 -1.50 10.18 -41.21 -0.42 -1.92 16 22 C -0.23 -2.58 11.23 29.04 0.33 -2.26 16 23 S 0.14 1.83 23.12 -107.50 -2.49 -0.65 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.28 6.77 -51.93 -0.35 0.93 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.98 5.35 -52.48 -0.28 1.70 16 28 H 0.12 3.28 6.12 -52.49 -0.32 2.96 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 31 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -27.93 303.33 -9.48 -37.41 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.79 Total: 6.32 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: -3.16 Total: -34.48 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.60 Total: -20.16 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.18 Total: -6.70 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.49 Total: -0.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.93 -9.48 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.076 kcal (2) G-P(sol) polarization free energy of solvation -27.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds