Wall clock time and date at job start Mon Mar 30 2020 01:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47221 * 2 1 4 4 O 1.42905 * 109.47465 * 239.99606 * 2 1 3 5 5 C 1.35640 * 116.99569 * 85.77714 * 4 2 1 6 6 C 1.38443 * 120.27033 * 354.68777 * 5 4 2 7 7 C 1.38303 * 120.05319 * 179.77000 * 6 5 4 8 8 C 1.38825 * 120.58932 * 0.50661 * 7 6 5 9 9 C 1.36483 * 120.54076 * 359.74687 * 8 7 6 10 10 C 1.40729 * 119.92671 * 0.02562 * 9 8 7 11 11 C 1.41154 * 120.29113 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00304 * 155.13837 * 11 10 9 13 13 C 1.39938 * 119.99592 * 335.13434 * 11 10 9 14 14 N 1.30860 * 120.00223 * 343.81290 * 13 11 10 15 15 Si 1.86799 * 119.99759 * 163.81383 * 13 11 10 16 16 H 1.48501 * 109.47144 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47181 * 119.99832 * 15 13 11 18 18 H 1.48495 * 109.47175 * 239.99912 * 15 13 11 19 19 C 1.50697 * 109.46932 * 119.99722 * 2 1 3 20 20 C 1.33393 * 125.20600 * 264.99770 * 19 2 1 21 21 C 1.38422 * 114.92469 * 179.97438 * 20 19 2 22 22 C 1.33389 * 114.91860 * 0.02562 * 21 20 19 23 23 S 1.75884 * 109.59519 * 359.75131 * 22 21 20 24 24 H 1.08996 * 109.46803 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46775 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.46508 * 60.00320 * 1 2 3 27 27 H 1.08004 * 119.97514 * 359.97438 * 6 5 4 28 28 H 1.08001 * 119.70875 * 180.23434 * 7 6 5 29 29 H 1.08004 * 119.73230 * 179.77156 * 8 7 6 30 30 H 1.07999 * 120.03766 * 179.97438 * 9 8 7 31 31 H 0.97005 * 119.99921 * 180.02562 * 14 13 11 32 32 H 1.08004 * 122.53345 * 0.02562 * 20 19 2 33 33 H 1.07994 * 122.53636 * 180.02562 * 21 20 19 34 34 H 1.08001 * 125.20286 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6737 -1.1667 5 6 2.1278 0.0650 -2.2979 6 6 1.6950 1.3798 -2.3225 7 6 1.8253 2.1303 -3.4768 8 6 2.3790 1.5745 -4.6221 9 6 2.8089 0.2792 -4.6263 10 6 2.6914 -0.5034 -3.4626 11 6 3.1340 -1.8437 -3.4582 12 1 3.4226 -2.3141 -2.5299 13 6 3.1987 -2.5630 -4.6568 14 7 2.5667 -2.1271 -5.7165 15 14 4.1873 -4.1456 -4.7441 16 1 4.8027 -4.4184 -3.4204 17 1 3.2904 -5.2697 -5.1146 18 1 5.2550 -4.0065 -5.7666 19 6 2.0323 -0.7103 1.2305 20 6 2.3782 -0.1167 2.3738 21 6 2.8113 -0.9755 3.3693 22 6 2.8177 -2.2666 3.0342 23 16 2.2457 -2.4497 1.3811 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.2583 1.8208 -1.4386 28 1 1.4892 3.1566 -3.4887 29 1 2.4707 2.1722 -5.5171 30 1 3.2381 -0.1451 -5.5220 31 1 2.6113 -2.6259 -6.5473 32 1 2.3237 0.9530 2.5126 33 1 3.1207 -0.6265 4.3434 34 1 3.1235 -3.0760 3.6805 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230272973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:07 Heat of formation + Delta-G solvation = 14.744211 kcal Electronic energy + Delta-G solvation = -18288.752099 eV Core-core repulsion = 15471.430281 eV Total energy + Delta-G solvation = -2817.321819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.09391 -37.59822 -36.17994 -33.58461 -32.11318 -29.60365 -28.57151 -28.19686 -25.17267 -24.22484 -22.39556 -20.91483 -20.25157 -19.09557 -17.46031 -17.12841 -16.35525 -15.29035 -15.15890 -14.48492 -14.29124 -14.14312 -13.46633 -13.00899 -12.71757 -12.61396 -12.42650 -12.23326 -12.03433 -11.69664 -11.57412 -11.26322 -11.09059 -10.97104 -10.75322 -10.43744 -10.32711 -9.99439 -9.69646 -9.38135 -9.15196 -8.50339 -8.23701 -7.46093 -7.00878 -6.66507 -4.22172 1.16788 1.86169 2.29678 2.76579 2.85873 3.00352 3.11849 3.18638 3.22338 3.99502 4.16161 4.66901 5.01299 5.17084 5.41224 5.45865 5.59117 5.66919 5.69207 5.88211 6.07974 6.10090 6.21047 6.31904 6.39187 6.47073 6.50873 6.60454 6.96390 7.13461 7.32301 7.39103 7.75073 7.78921 8.08841 8.24449 8.42885 8.73379 8.88880 9.09004 10.24731 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.006734 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.854383 B = 4156.999873 C = 5576.699859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.151 3.849 3 H 0.081 0.919 4 O -0.297 6.297 5 C 0.011 3.989 6 C -0.178 4.178 7 C -0.215 4.215 8 C -0.126 4.126 9 C -0.146 4.146 10 C 0.098 3.902 11 C -0.443 4.443 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.798 5.798 15 Si 0.906 3.094 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.273 1.273 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.135 4.135 22 C -0.237 4.237 23 S 0.152 5.848 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.279 0.721 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 0.856 11.766 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.092 3.908 3 H 0.099 0.901 4 O -0.212 6.212 5 C -0.033 4.033 6 C -0.197 4.197 7 C -0.235 4.235 8 C -0.145 4.145 9 C -0.165 4.165 10 C 0.096 3.904 11 C -0.473 4.473 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.425 5.425 15 Si 0.731 3.269 16 H -0.183 1.183 17 H -0.200 1.200 18 H -0.198 1.198 19 C -0.278 4.278 20 C -0.177 4.177 21 C -0.167 4.167 22 C -0.373 4.373 23 S 0.417 5.583 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.210 -0.684 10.592 10.683 hybrid contribution 0.501 0.785 0.898 1.293 sum -0.709 0.100 11.490 11.513 Atomic orbital electron populations 1.22320 0.94742 1.03176 1.02439 1.20380 0.93547 0.95001 0.81918 0.90112 1.86024 1.82323 1.36844 1.16037 1.19135 1.05728 0.91020 0.87445 1.20622 1.06609 0.94183 0.98251 1.20126 1.10881 0.98367 0.94111 1.20392 1.01667 0.95981 0.96445 1.20921 1.04126 0.92317 0.99162 1.17075 0.91070 0.93700 0.88587 1.19465 1.37457 0.96102 0.94233 0.89959 1.25889 0.93836 0.99544 0.95109 1.69838 1.32285 1.38237 1.02117 0.86287 0.80082 0.81046 0.79534 1.18274 1.20034 1.19802 1.24490 1.07195 0.97242 0.98876 1.19972 1.03975 1.01079 0.92721 1.20025 1.03693 0.92417 1.00517 1.25770 1.10286 1.00713 1.00542 1.84688 1.61956 1.04396 1.07276 0.91698 0.91883 0.90985 0.88575 0.89409 0.89389 0.85685 0.91052 0.84563 0.84736 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.18 37.16 0.34 -2.33 16 2 C 0.15 2.70 2.65 -27.88 -0.07 2.63 16 3 H 0.08 1.40 6.25 -51.93 -0.32 1.08 16 4 O -0.30 -6.78 8.82 -18.62 -0.16 -6.94 16 5 C 0.01 0.27 6.64 -38.33 -0.25 0.01 16 6 C -0.18 -3.99 8.29 -39.48 -0.33 -4.31 16 7 C -0.22 -4.84 10.04 -39.34 -0.39 -5.23 16 8 C -0.13 -2.99 9.97 -40.00 -0.40 -3.39 16 9 C -0.15 -3.81 8.64 -39.27 -0.34 -4.15 16 10 C 0.10 2.67 5.59 -106.68 -0.60 2.07 16 11 C -0.44 -12.06 8.73 -37.84 -0.33 -12.39 16 12 H 0.08 2.24 7.65 -52.49 -0.40 1.84 16 13 C 0.07 1.86 5.17 -17.33 -0.09 1.77 16 14 N -0.80 -20.85 10.88 55.55 0.60 -20.24 16 15 Si 0.91 19.19 29.59 -169.99 -5.03 14.16 16 16 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 C -0.16 -2.61 5.52 -36.00 -0.20 -2.80 16 20 C -0.15 -2.04 10.05 -41.21 -0.41 -2.45 16 21 C -0.14 -1.68 10.18 -41.21 -0.42 -2.10 16 22 C -0.24 -3.02 11.23 29.04 0.33 -2.69 16 23 S 0.15 2.39 23.04 -107.50 -2.48 -0.08 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.19 7.02 -51.93 -0.36 0.83 16 27 H 0.10 1.87 5.48 -52.48 -0.29 1.58 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 30 H 0.13 3.36 6.12 -52.49 -0.32 3.04 16 31 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 32 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -28.48 302.89 -9.46 -37.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.79 Total: 5.97 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -3.17 Total: -35.37 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.60 Total: -20.24 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.16 Total: -6.94 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.48 Total: -0.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.48 -9.46 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.683 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds