Wall clock time and date at job start Mon Mar 30 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47221 * 2 1 4 4 O 1.42905 * 109.47465 * 239.99606 * 2 1 3 5 5 C 1.35640 * 116.99569 * 85.77714 * 4 2 1 6 6 C 1.38443 * 120.27033 * 354.68777 * 5 4 2 7 7 C 1.38303 * 120.05319 * 179.77000 * 6 5 4 8 8 C 1.38825 * 120.58932 * 0.50661 * 7 6 5 9 9 C 1.36483 * 120.54076 * 359.74687 * 8 7 6 10 10 C 1.40729 * 119.92671 * 0.02562 * 9 8 7 11 11 C 1.41154 * 120.29113 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00304 * 155.13837 * 11 10 9 13 13 C 1.39938 * 119.99592 * 335.13434 * 11 10 9 14 14 N 1.30860 * 120.00223 * 343.81290 * 13 11 10 15 15 Si 1.86799 * 119.99759 * 163.81383 * 13 11 10 16 16 H 1.48501 * 109.47144 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47181 * 119.99832 * 15 13 11 18 18 H 1.48495 * 109.47175 * 239.99912 * 15 13 11 19 19 C 1.50697 * 109.46932 * 119.99722 * 2 1 3 20 20 C 1.33393 * 125.20600 * 264.99770 * 19 2 1 21 21 C 1.38422 * 114.92469 * 179.97438 * 20 19 2 22 22 C 1.33389 * 114.91860 * 0.02562 * 21 20 19 23 23 S 1.75884 * 109.59519 * 359.75131 * 22 21 20 24 24 H 1.08996 * 109.46803 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46775 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.46508 * 60.00320 * 1 2 3 27 27 H 1.08004 * 119.97514 * 359.97438 * 6 5 4 28 28 H 1.08001 * 119.70875 * 180.23434 * 7 6 5 29 29 H 1.08004 * 119.73230 * 179.77156 * 8 7 6 30 30 H 1.07999 * 120.03766 * 179.97438 * 9 8 7 31 31 H 0.97005 * 119.99921 * 180.02562 * 14 13 11 32 32 H 1.08004 * 122.53345 * 0.02562 * 20 19 2 33 33 H 1.07994 * 122.53636 * 180.02562 * 21 20 19 34 34 H 1.08001 * 125.20286 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6737 -1.1667 5 6 2.1278 0.0650 -2.2979 6 6 1.6950 1.3798 -2.3225 7 6 1.8253 2.1303 -3.4768 8 6 2.3790 1.5745 -4.6221 9 6 2.8089 0.2792 -4.6263 10 6 2.6914 -0.5034 -3.4626 11 6 3.1340 -1.8437 -3.4582 12 1 3.4226 -2.3141 -2.5299 13 6 3.1987 -2.5630 -4.6568 14 7 2.5667 -2.1271 -5.7165 15 14 4.1873 -4.1456 -4.7441 16 1 4.8027 -4.4184 -3.4204 17 1 3.2904 -5.2697 -5.1146 18 1 5.2550 -4.0065 -5.7666 19 6 2.0323 -0.7103 1.2305 20 6 2.3782 -0.1167 2.3738 21 6 2.8113 -0.9755 3.3693 22 6 2.8177 -2.2666 3.0342 23 16 2.2457 -2.4497 1.3811 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.2583 1.8208 -1.4386 28 1 1.4892 3.1566 -3.4887 29 1 2.4707 2.1722 -5.5171 30 1 3.2381 -0.1451 -5.5220 31 1 2.6113 -2.6259 -6.5473 32 1 2.3237 0.9530 2.5126 33 1 3.1207 -0.6265 4.3434 34 1 3.1235 -3.0760 3.6805 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230272973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:06 Heat of formation + Delta-G solvation = 0.846177 kcal Electronic energy + Delta-G solvation = -18289.354763 eV Core-core repulsion = 15471.430281 eV Total energy + Delta-G solvation = -2817.924483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74822 -38.86881 -37.81309 -35.48740 -33.49731 -31.46087 -30.39059 -29.36668 -27.08352 -25.42847 -23.83998 -22.69546 -21.90646 -20.26042 -19.26936 -18.55978 -17.96926 -16.93808 -16.44352 -16.03994 -15.91281 -15.82792 -14.97119 -14.62282 -14.33727 -14.01777 -13.69309 -13.54482 -13.37687 -13.14797 -13.01208 -12.94421 -12.77326 -12.70171 -12.23806 -12.10709 -11.67060 -11.58626 -11.50693 -11.15459 -11.04679 -9.61120 -9.40964 -9.37364 -8.87436 -8.54907 -6.21601 0.07332 0.72681 0.93786 1.10989 1.21660 1.36179 1.48205 1.51475 1.83429 2.22572 2.67558 2.75582 3.69529 3.73899 4.05577 4.15295 4.25483 4.37824 4.52374 4.59883 4.61350 4.69338 4.78583 4.83302 5.10717 5.13572 5.19507 5.23089 5.36558 5.45643 5.48455 5.60571 5.87744 5.91135 6.17972 6.32583 6.53745 6.81523 6.93712 7.24163 8.37522 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.006734 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.854383 B = 4156.999873 C = 5576.699859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.088 0.912 4 O -0.320 6.320 5 C 0.005 3.995 6 C -0.180 4.180 7 C -0.205 4.205 8 C -0.136 4.136 9 C -0.166 4.166 10 C 0.057 3.943 11 C -0.479 4.479 12 H 0.065 0.935 13 C 0.034 3.966 14 N -0.830 5.830 15 Si 0.974 3.026 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.191 4.191 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.217 4.217 23 S 0.079 5.921 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.286 0.714 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 2.033 13.951 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 H 0.105 0.895 4 O -0.235 6.235 5 C -0.039 4.039 6 C -0.198 4.198 7 C -0.224 4.224 8 C -0.155 4.155 9 C -0.186 4.186 10 C 0.055 3.945 11 C -0.509 4.509 12 H 0.083 0.917 13 C -0.180 4.180 14 N -0.457 5.457 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.190 1.190 18 H -0.185 1.185 19 C -0.308 4.308 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.352 4.352 23 S 0.343 5.657 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.183 0.512 12.786 12.851 hybrid contribution 0.437 0.565 0.397 0.817 sum -0.746 1.077 13.183 13.248 Atomic orbital electron populations 1.22268 0.93398 1.02796 1.03468 1.20649 0.94668 0.95188 0.80802 0.89457 1.86002 1.82585 1.38118 1.16836 1.19310 1.04954 0.91940 0.87701 1.20987 1.05902 0.93284 0.99655 1.20605 1.08694 0.99891 0.93249 1.20689 1.01383 0.95276 0.98119 1.20895 1.05510 0.93603 0.98620 1.17466 0.92549 0.94288 0.90208 1.19512 1.39988 0.96984 0.94433 0.91676 1.26639 0.94325 1.02659 0.94327 1.69877 1.33244 1.39846 1.02728 0.85275 0.78766 0.77046 0.79374 1.18726 1.18995 1.18463 1.24377 1.10286 0.96890 0.99247 1.20387 1.01382 1.02530 0.91835 1.20428 1.02774 0.91857 1.01619 1.26089 1.08854 1.02025 0.98266 1.84934 1.63944 1.05768 1.11024 0.92853 0.88554 0.92023 0.85283 0.85718 0.86975 0.87399 0.90297 0.82114 0.81006 0.79365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 9.18 71.98 0.66 -4.29 16 2 C 0.15 5.11 2.65 29.85 0.08 5.19 16 3 H 0.09 2.88 6.25 -2.39 -0.01 2.87 16 4 O -0.32 -15.02 8.82 -89.54 -0.79 -15.81 16 5 C 0.01 0.27 6.64 23.08 0.15 0.43 16 6 C -0.18 -7.83 8.29 22.33 0.19 -7.65 16 7 C -0.21 -8.79 10.04 22.43 0.23 -8.56 16 8 C -0.14 -6.39 9.97 22.00 0.22 -6.17 16 9 C -0.17 -9.01 8.64 22.47 0.19 -8.82 16 10 C 0.06 3.24 5.59 -21.20 -0.12 3.12 16 11 C -0.48 -27.57 8.73 23.40 0.20 -27.37 16 12 H 0.07 3.81 7.65 -2.91 -0.02 3.79 16 13 C 0.03 1.80 5.17 85.25 0.44 2.24 16 14 N -0.83 -45.03 10.88 21.83 0.24 -44.79 16 15 Si 0.97 40.73 29.59 68.60 2.03 42.76 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 C -0.19 -6.03 5.52 24.59 0.14 -5.89 16 20 C -0.13 -3.23 10.05 21.22 0.21 -3.01 16 21 C -0.14 -2.88 10.18 21.22 0.22 -2.67 16 22 C -0.22 -4.97 11.23 66.72 0.75 -4.22 16 23 S 0.08 2.52 23.04 -56.49 -1.30 1.22 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.98 7.02 -2.38 -0.02 1.97 16 27 H 0.13 4.67 5.48 -2.91 -0.02 4.66 16 28 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 29 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.11 6.09 6.12 -2.91 -0.02 6.07 16 31 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 32 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -64.84 302.89 4.84 -59.99 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 1.11 Total: 24.32 kcal Atomic # 6 Polarization: -71.24 SS G_CDS: 3.56 Total: -67.68 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.24 Total: -44.79 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.79 Total: -15.81 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.30 Total: 1.22 kcal Total: -64.84 4.84 -59.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.840 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds