Wall clock time and date at job start Mon Mar 30 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35628 * 116.99852 * 2 1 4 4 C 1.38503 * 120.08282 * 0.02562 * 3 2 1 5 5 C 1.38043 * 120.30488 * 180.02562 * 4 3 2 6 6 C 1.39962 * 120.46742 * 0.02562 * 5 4 3 7 7 C 1.48383 * 119.92281 * 179.97438 * 6 5 4 8 8 C 1.34574 * 122.77320 * 130.02247 * 7 6 5 9 9 S 1.75842 * 109.54645 * 179.97438 * 8 7 6 10 10 C 1.75811 * 91.15171 * 359.97438 * 9 8 7 11 11 C 1.33065 * 109.93040 * 0.02562 * 10 9 8 12 12 C 1.50695 * 122.54391 * 180.02562 * 11 10 9 13 13 C 1.38591 * 120.16036 * 0.25182 * 6 5 4 14 14 C 1.40534 * 119.68924 * 359.49692 * 13 6 5 15 15 C 1.41174 * 120.22727 * 180.23443 * 14 13 6 16 16 H 1.07994 * 119.99764 * 204.87750 * 15 14 13 17 17 C 1.39883 * 119.99890 * 24.87243 * 15 14 13 18 18 N 1.30886 * 120.00347 * 17.62002 * 17 15 14 19 19 Si 1.86805 * 119.99766 * 197.61891 * 17 15 14 20 20 H 1.48497 * 109.47178 * 90.00214 * 19 17 15 21 21 H 1.48500 * 109.47242 * 210.00085 * 19 17 15 22 22 H 1.48503 * 109.47216 * 330.00351 * 19 17 15 23 23 H 1.09006 * 109.46863 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46948 * 299.99745 * 1 2 3 25 25 H 1.08994 * 109.47334 * 60.00115 * 1 2 3 26 26 H 1.08001 * 119.84932 * 0.04299 * 4 3 2 27 27 H 1.08000 * 119.76916 * 180.02562 * 5 4 3 28 28 H 1.08007 * 125.22607 * 359.96151 * 8 7 6 29 29 H 1.07999 * 125.03997 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.47297 * 269.97441 * 12 11 10 31 31 H 1.08998 * 109.47544 * 29.97886 * 12 11 10 32 32 H 1.09001 * 109.47237 * 149.98105 * 12 11 10 33 33 H 1.07997 * 120.15835 * 179.74816 * 13 6 5 34 34 H 0.97003 * 119.99928 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2920 2.3711 0.0005 5 6 1.9139 3.6035 0.0000 6 6 3.3106 3.6936 -0.0016 7 6 3.9665 5.0246 -0.0027 8 6 4.9422 5.3567 0.8626 9 16 5.4669 7.0062 0.5529 10 6 4.3118 7.1643 -0.7631 11 6 3.6235 6.0338 -0.9007 12 6 2.5551 5.8576 -1.9487 13 6 4.0826 2.5427 -0.0080 14 6 3.4565 1.2845 -0.0021 15 6 4.2319 0.1048 -0.0035 16 1 3.8174 -0.8133 -0.3928 17 6 5.5370 0.1251 0.4994 18 7 5.9255 1.1074 1.2722 19 14 6.7256 -1.2500 0.0680 20 1 7.4630 -0.8963 -1.1715 21 1 7.6903 -1.4379 1.1812 22 1 5.9685 -2.5090 -0.1487 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2136 2.3133 0.0017 27 1 1.3185 4.5046 0.0008 28 1 5.3415 4.7095 1.6295 29 1 4.1797 8.0482 -1.3694 30 1 1.5919 6.1639 -1.5406 31 1 2.7934 6.4715 -2.8173 32 1 2.5071 4.8101 -2.2462 33 1 5.1603 2.6122 -0.0133 34 1 6.8305 1.1212 1.6211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241729536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:34 Heat of formation + Delta-G solvation = 5.652341 kcal Electronic energy + Delta-G solvation = -18378.273716 eV Core-core repulsion = 15560.557644 eV Total energy + Delta-G solvation = -2817.716072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.93520 -37.92498 -35.68445 -33.57341 -30.86697 -29.97279 -28.67140 -26.86004 -26.18850 -25.05555 -22.59129 -21.02195 -20.22964 -18.01641 -17.23854 -16.84040 -16.32273 -15.39390 -14.69996 -14.60070 -14.56031 -13.54853 -13.51103 -12.95197 -12.75267 -12.60639 -12.39973 -12.16715 -11.70415 -11.54015 -11.46996 -11.21162 -11.19527 -10.95385 -10.83150 -10.46331 -10.43659 -9.94205 -9.79922 -9.44849 -9.15955 -8.25347 -7.90871 -7.50086 -6.88802 -6.63093 -4.24513 1.47073 2.14144 2.41040 2.64651 2.81029 3.10604 3.15074 3.16613 3.47275 3.97683 4.49596 4.62656 5.30954 5.48741 5.57085 5.74247 5.79157 5.82118 5.91596 5.97706 6.00495 6.08073 6.15000 6.30013 6.41716 6.58937 6.83338 6.91456 7.00067 7.12401 7.30560 7.36839 7.67300 7.70653 7.99981 8.18462 8.38260 8.68959 8.84775 9.05054 10.21933 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.006972 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.013799 B = 4015.006155 C = 5560.781975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.017 3.983 4 C -0.180 4.180 5 C -0.188 4.188 6 C -0.050 4.050 7 C -0.033 4.033 8 C -0.197 4.197 9 S 0.050 5.950 10 C -0.231 4.231 11 C -0.081 4.081 12 C -0.092 4.092 13 C -0.124 4.124 14 C 0.095 3.905 15 C -0.445 4.445 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.797 5.797 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.262 1.262 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 6.728 -2.584 7.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.027 4.027 4 C -0.199 4.199 5 C -0.208 4.208 6 C -0.053 4.053 7 C -0.044 4.044 8 C -0.331 4.331 9 S 0.314 5.686 10 C -0.366 4.366 11 C -0.094 4.094 12 C -0.151 4.151 13 C -0.144 4.144 14 C 0.092 3.908 15 C -0.475 4.475 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.424 5.424 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 H 0.099 0.901 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.185 0.815 29 H 0.174 0.826 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.715 7.607 -1.765 7.995 hybrid contribution -0.696 -1.248 -0.598 1.549 sum -2.410 6.359 -2.363 7.199 Atomic orbital electron populations 1.22735 0.81752 1.01729 0.99930 1.85965 1.18210 1.28328 1.90114 1.19326 0.92366 0.82609 1.08421 1.20528 0.97383 0.92715 1.09238 1.20094 0.92783 0.95245 1.12641 1.18033 0.92518 0.89721 1.05043 1.17983 0.96441 0.95017 0.94999 1.25757 1.03459 0.97772 1.06161 1.83857 1.40600 1.12147 1.31956 1.25076 1.03999 1.02445 1.05079 1.19003 0.99196 0.92620 0.98605 1.20550 0.95796 1.03318 0.95440 1.21191 0.99397 0.89444 1.04369 1.16969 0.87301 0.93885 0.92630 1.19402 0.96486 0.96553 1.35068 0.89930 1.25865 0.98835 0.96893 0.92705 1.69826 1.18919 1.30841 1.22767 0.86308 0.79817 0.81674 0.78943 1.19348 1.20407 1.18584 0.90057 0.94138 0.94219 0.88464 0.88964 0.81542 0.82637 0.91590 0.92492 0.90425 0.85440 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.17 9.76 -18.58 -0.18 -7.35 16 3 C 0.02 0.43 6.72 -38.29 -0.26 0.17 16 4 C -0.18 -3.95 9.01 -39.56 -0.36 -4.31 16 5 C -0.19 -4.06 8.30 -39.01 -0.32 -4.39 16 6 C -0.05 -1.15 5.00 -104.94 -0.53 -1.67 16 7 C -0.03 -0.67 5.35 -106.60 -0.57 -1.24 16 8 C -0.20 -3.75 10.84 29.44 0.32 -3.43 16 9 S 0.05 0.78 23.32 -107.50 -2.51 -1.73 16 10 C -0.23 -3.55 10.94 28.93 0.32 -3.23 16 11 C -0.08 -1.41 5.79 -106.00 -0.61 -2.03 16 12 C -0.09 -1.39 8.75 36.00 0.31 -1.07 16 13 C -0.12 -3.15 8.21 -38.59 -0.32 -3.47 16 14 C 0.09 2.53 5.58 -106.72 -0.60 1.93 16 15 C -0.45 -11.96 8.71 -37.85 -0.33 -12.29 16 16 H 0.08 2.21 7.64 -52.49 -0.40 1.81 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.80 -20.39 10.97 55.54 0.61 -19.78 16 19 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 25 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.10 1.86 6.27 -52.49 -0.33 1.53 16 27 H 0.09 1.80 7.29 -52.49 -0.38 1.42 16 28 H 0.17 3.25 8.06 -52.48 -0.42 2.83 16 29 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.07 0.91 7.87 -51.93 -0.41 0.51 16 31 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.08 1.31 6.97 -51.93 -0.36 0.95 16 33 H 0.13 3.37 6.17 -52.49 -0.32 3.05 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -27.85 301.30 -8.43 -36.28 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.83 Total: 5.77 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -2.04 Total: -31.68 kcal Atomic # 7 Polarization: -20.39 SS G_CDS: 0.61 Total: -19.78 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.18 Total: -7.35 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.85 -8.43 -36.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.935 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds