Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35628 * 116.99852 * 2 1 4 4 C 1.38503 * 120.08282 * 0.02562 * 3 2 1 5 5 C 1.38043 * 120.30488 * 180.02562 * 4 3 2 6 6 C 1.39962 * 120.46742 * 0.02562 * 5 4 3 7 7 C 1.48383 * 119.92281 * 179.97438 * 6 5 4 8 8 C 1.34574 * 122.77320 * 130.02247 * 7 6 5 9 9 S 1.75842 * 109.54645 * 179.97438 * 8 7 6 10 10 C 1.75811 * 91.15171 * 359.97438 * 9 8 7 11 11 C 1.33065 * 109.93040 * 0.02562 * 10 9 8 12 12 C 1.50695 * 122.54391 * 180.02562 * 11 10 9 13 13 C 1.38591 * 120.16036 * 0.25182 * 6 5 4 14 14 C 1.40534 * 119.68924 * 359.49692 * 13 6 5 15 15 C 1.41174 * 120.22727 * 180.23443 * 14 13 6 16 16 H 1.07994 * 119.99764 * 204.87750 * 15 14 13 17 17 C 1.39883 * 119.99890 * 24.87243 * 15 14 13 18 18 N 1.30886 * 120.00347 * 17.62002 * 17 15 14 19 19 Si 1.86805 * 119.99766 * 197.61891 * 17 15 14 20 20 H 1.48497 * 109.47178 * 90.00214 * 19 17 15 21 21 H 1.48500 * 109.47242 * 210.00085 * 19 17 15 22 22 H 1.48503 * 109.47216 * 330.00351 * 19 17 15 23 23 H 1.09006 * 109.46863 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46948 * 299.99745 * 1 2 3 25 25 H 1.08994 * 109.47334 * 60.00115 * 1 2 3 26 26 H 1.08001 * 119.84932 * 0.04299 * 4 3 2 27 27 H 1.08000 * 119.76916 * 180.02562 * 5 4 3 28 28 H 1.08007 * 125.22607 * 359.96151 * 8 7 6 29 29 H 1.07999 * 125.03997 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.47297 * 269.97441 * 12 11 10 31 31 H 1.08998 * 109.47544 * 29.97886 * 12 11 10 32 32 H 1.09001 * 109.47237 * 149.98105 * 12 11 10 33 33 H 1.07997 * 120.15835 * 179.74816 * 13 6 5 34 34 H 0.97003 * 119.99928 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2920 2.3711 0.0005 5 6 1.9139 3.6035 0.0000 6 6 3.3106 3.6936 -0.0016 7 6 3.9665 5.0246 -0.0027 8 6 4.9422 5.3567 0.8626 9 16 5.4669 7.0062 0.5529 10 6 4.3118 7.1643 -0.7631 11 6 3.6235 6.0338 -0.9007 12 6 2.5551 5.8576 -1.9487 13 6 4.0826 2.5427 -0.0080 14 6 3.4565 1.2845 -0.0021 15 6 4.2319 0.1048 -0.0035 16 1 3.8174 -0.8133 -0.3928 17 6 5.5370 0.1251 0.4994 18 7 5.9255 1.1074 1.2722 19 14 6.7256 -1.2500 0.0680 20 1 7.4630 -0.8963 -1.1715 21 1 7.6903 -1.4379 1.1812 22 1 5.9685 -2.5090 -0.1487 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2136 2.3133 0.0017 27 1 1.3185 4.5046 0.0008 28 1 5.3415 4.7095 1.6295 29 1 4.1797 8.0482 -1.3694 30 1 1.5919 6.1639 -1.5406 31 1 2.7934 6.4715 -2.8173 32 1 2.5071 4.8101 -2.2462 33 1 5.1603 2.6122 -0.0133 34 1 6.8305 1.1212 1.6211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241729536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -8.365358 kcal Electronic energy + Delta-G solvation = -18378.881569 eV Core-core repulsion = 15560.557644 eV Total energy + Delta-G solvation = -2818.323925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60917 -39.42340 -37.37699 -35.41370 -32.29264 -31.79242 -30.23700 -28.25111 -27.73723 -26.80721 -24.09009 -22.84180 -21.81790 -19.68637 -18.71981 -18.38386 -18.03165 -17.12017 -16.30510 -16.20611 -16.10033 -15.14820 -14.80537 -14.60336 -14.42695 -13.97758 -13.93313 -13.60510 -13.42143 -12.94138 -12.84816 -12.82056 -12.80464 -12.53755 -12.39341 -12.09346 -11.90162 -11.56389 -11.46079 -11.20755 -11.02043 -9.66313 -9.39380 -9.21702 -8.70062 -8.39304 -6.20924 0.08467 0.82293 0.89050 1.00099 1.15798 1.36999 1.48521 1.49925 1.93678 2.22821 2.76218 2.93436 3.66515 4.10672 4.13644 4.33233 4.44853 4.50621 4.51269 4.61933 4.64607 4.74839 4.76497 4.89658 5.03696 5.12471 5.17099 5.28379 5.39666 5.45983 5.60073 5.72149 5.86109 5.88655 6.18289 6.32161 6.51007 6.80995 6.93472 7.24118 8.37469 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.006972 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.013799 B = 4015.006155 C = 5560.781975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.004 3.996 4 C -0.180 4.180 5 C -0.177 4.177 6 C -0.054 4.054 7 C -0.055 4.055 8 C -0.227 4.227 9 S 0.108 5.892 10 C -0.214 4.214 11 C -0.105 4.105 12 C -0.088 4.088 13 C -0.144 4.144 14 C 0.056 3.944 15 C -0.484 4.484 16 H 0.068 0.932 17 C 0.034 3.966 18 N -0.827 5.827 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.262 1.262 23 H 0.110 0.890 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.195 0.805 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 8.683 -3.346 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.256 6.256 3 C -0.041 4.041 4 C -0.198 4.198 5 C -0.197 4.197 6 C -0.056 4.056 7 C -0.068 4.068 8 C -0.362 4.362 9 S 0.373 5.627 10 C -0.349 4.349 11 C -0.117 4.117 12 C -0.147 4.147 13 C -0.164 4.164 14 C 0.054 3.946 15 C -0.514 4.514 16 H 0.086 0.914 17 C -0.179 4.179 18 N -0.454 5.454 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.186 1.186 23 H 0.128 0.872 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.212 0.788 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.570 9.574 -2.525 10.230 hybrid contribution -0.554 -1.707 -0.338 1.826 sum -3.125 7.867 -2.863 8.936 Atomic orbital electron populations 1.23096 0.78574 1.04190 1.01071 1.85910 1.21569 1.27973 1.90106 1.19493 0.92172 0.84051 1.08355 1.20882 0.99017 0.91906 1.08035 1.20467 0.92579 0.96236 1.10384 1.18311 0.93219 0.90472 1.03612 1.18086 0.97317 0.94686 0.96662 1.25781 1.03876 1.00399 1.06123 1.83626 1.39571 1.08240 1.31282 1.25565 1.02131 1.02839 1.04373 1.19110 1.00892 0.92529 0.99183 1.20545 0.95888 1.02329 0.95905 1.21073 0.98668 0.90408 1.06284 1.17365 0.88963 0.94368 0.93919 1.19489 0.98162 0.96395 1.37383 0.91352 1.26632 0.99845 0.99386 0.92069 1.69886 1.19530 1.32508 1.23498 0.85286 0.77521 0.78435 0.78980 1.18749 1.19153 1.18567 0.87166 0.93118 0.92661 0.85129 0.86191 0.83556 0.78771 0.90219 0.89706 0.92935 0.87641 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.81 113.37 1.11 1.93 16 2 O -0.34 -15.91 9.76 -89.41 -0.87 -16.78 16 3 C 0.00 0.20 6.72 23.11 0.16 0.36 16 4 C -0.18 -7.78 9.01 22.29 0.20 -7.58 16 5 C -0.18 -7.54 8.30 22.64 0.19 -7.35 16 6 C -0.05 -2.50 5.00 -20.07 -0.10 -2.60 16 7 C -0.06 -2.23 5.35 -21.14 -0.11 -2.35 16 8 C -0.23 -8.74 10.84 66.98 0.73 -8.01 16 9 S 0.11 3.10 23.32 -56.49 -1.32 1.78 16 10 C -0.21 -5.79 10.94 66.66 0.73 -5.06 16 11 C -0.10 -3.42 5.79 -20.75 -0.12 -3.54 16 12 C -0.09 -2.42 8.75 71.23 0.62 -1.79 16 13 C -0.14 -7.75 8.21 22.91 0.19 -7.56 16 14 C 0.06 3.16 5.58 -21.22 -0.12 3.04 16 15 C -0.48 -27.60 8.71 23.39 0.20 -27.39 16 16 H 0.07 3.91 7.64 -2.91 -0.02 3.89 16 17 C 0.03 1.81 5.14 85.23 0.44 2.25 16 18 N -0.83 -44.61 10.97 21.82 0.24 -44.37 16 19 Si 0.98 40.40 29.59 68.60 2.03 42.43 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 24 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 25 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 26 H 0.13 4.67 6.27 -2.91 -0.02 4.65 16 27 H 0.12 4.40 7.29 -2.91 -0.02 4.38 16 28 H 0.15 6.09 8.06 -2.91 -0.02 6.07 16 29 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.08 1.94 7.87 -2.39 -0.02 1.92 16 31 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 32 H 0.05 1.70 6.97 -2.39 -0.02 1.69 16 33 H 0.11 6.02 6.17 -2.91 -0.02 6.00 16 34 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 Total: -1.00 -64.22 301.30 5.30 -58.91 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 1.11 Total: 23.69 kcal Atomic # 6 Polarization: -69.77 SS G_CDS: 4.11 Total: -65.66 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.24 Total: -44.37 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.87 Total: -16.78 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.32 Total: 1.78 kcal Total: -64.22 5.30 -58.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.548 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds